Wall clock time and date at job start Wed Apr 1 2020 04:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46871 * 2 1 4 4 C 1.35430 * 116.99484 * 179.97438 * 3 2 1 5 5 N 1.32228 * 119.80225 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.79874 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.40637 * 179.97438 * 6 5 4 8 8 C 1.38352 * 121.18889 * 0.02562 * 6 5 4 9 9 C 1.38344 * 119.45459 * 359.67326 * 8 6 5 10 10 C 1.39983 * 118.34872 * 0.56657 * 9 8 6 11 11 C 1.47529 * 120.59752 * 179.75738 * 10 9 8 12 12 O 1.21591 * 119.99893 * 126.25228 * 11 10 9 13 13 N 1.34773 * 119.99733 * 306.24941 * 11 10 9 14 14 C 1.46933 * 120.62878 * 174.17541 * 13 11 10 15 15 C 1.53195 * 108.77319 * 126.41416 * 14 13 11 16 16 C 1.53033 * 109.31194 * 54.63748 * 15 14 13 17 17 C 1.53001 * 109.45876 * 178.62977 * 16 15 14 18 18 N 1.46500 * 109.46179 * 58.65213 * 16 15 14 19 19 C 1.36940 * 119.99741 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00124 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99311 * 180.02562 * 19 18 16 22 22 N 1.31612 * 120.00526 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99549 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47177 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.47319 * 300.00244 * 23 21 19 26 26 H 1.48510 * 109.46888 * 60.00345 * 23 21 19 27 27 C 1.53039 * 109.52744 * 298.63803 * 16 15 14 28 28 C 1.46921 * 120.63253 * 354.20217 * 13 11 10 29 29 H 1.08992 * 109.47262 * 299.99741 * 1 2 3 30 30 H 1.09006 * 109.47190 * 60.00223 * 1 2 3 31 31 H 1.09005 * 109.46906 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46762 * 239.99719 * 2 1 3 33 33 H 1.08998 * 109.46914 * 120.00012 * 2 1 3 34 34 H 1.08997 * 109.46920 * 90.00105 * 7 6 5 35 35 H 1.08996 * 109.47403 * 210.00310 * 7 6 5 36 36 H 1.08998 * 109.46839 * 330.00623 * 7 6 5 37 37 H 1.07996 * 120.27225 * 179.97438 * 8 6 5 38 38 H 1.08001 * 120.82730 * 180.29422 * 9 8 6 39 39 H 1.08997 * 109.58529 * 6.62743 * 14 13 11 40 40 H 1.08994 * 109.58829 * 246.20387 * 14 13 11 41 41 H 1.09001 * 109.49624 * 294.68588 * 15 14 13 42 42 H 1.08994 * 109.52152 * 174.60484 * 15 14 13 43 43 H 1.09002 * 109.46934 * 300.02400 * 17 16 15 44 44 H 1.08998 * 109.47300 * 60.02573 * 17 16 15 45 45 H 1.09005 * 109.47248 * 180.02562 * 17 16 15 46 46 H 0.96990 * 120.00062 * 359.97438 * 18 16 15 47 47 H 0.97002 * 119.99995 * 359.97438 * 22 21 19 48 48 H 1.09002 * 109.49902 * 181.31218 * 27 16 15 49 49 H 1.08998 * 109.50293 * 301.40782 * 27 16 15 50 50 H 1.09000 * 109.58747 * 353.36678 * 28 13 11 51 51 H 1.08998 * 109.58648 * 113.80202 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6003 0.0005 7 6 6.3265 -0.6352 0.0011 8 6 6.0626 1.8474 0.0011 9 6 5.2713 2.9822 -0.0052 10 6 3.8806 2.8229 0.0002 11 6 2.9900 3.9990 -0.0008 12 8 2.1236 4.1049 -0.8473 13 7 3.1367 4.9561 0.9367 14 6 2.3447 6.1921 0.8750 15 6 1.6285 6.3861 2.2153 16 6 2.6570 6.3546 3.3480 17 6 1.9496 6.5822 4.6854 18 7 3.6500 7.4105 3.1351 19 6 4.6751 7.5764 4.0278 20 1 4.7518 6.9286 4.8884 21 6 5.6156 8.5773 3.8263 22 7 5.5219 9.3671 2.7777 23 14 7.0144 8.8031 5.0436 24 1 7.8756 9.9305 4.6045 25 1 6.4577 9.0993 6.3880 26 1 7.8225 7.5587 5.1055 27 6 3.3563 4.9934 3.3663 28 6 4.0921 4.7836 2.0395 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 6.5346 -0.9334 -1.0264 35 1 7.2641 -0.4232 0.5149 36 1 5.8048 -1.4425 0.5151 37 1 7.1390 1.9342 0.0015 38 1 5.7155 3.9666 -0.0097 39 1 1.6084 6.1147 0.0751 40 1 3.0038 7.0395 0.6869 41 1 0.9036 5.5850 2.3597 42 1 1.1140 7.3470 2.2176 43 1 1.4519 7.5519 4.6727 44 1 1.2108 5.7966 4.8439 45 1 2.6821 6.5603 5.4923 46 1 3.5813 7.9921 2.3619 47 1 4.7957 9.2496 2.1454 48 1 4.0722 4.9632 4.1877 49 1 2.6152 4.2054 3.4999 50 1 4.5087 3.7769 2.0079 51 1 4.8938 5.5162 1.9463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274389558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:38 Heat of formation + Delta-G solvation = -45.999066 kcal Electronic energy + Delta-G solvation = -32233.215677 eV Core-core repulsion = 28132.374228 eV Total energy + Delta-G solvation = -4100.841449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.21649 -40.97874 -39.30179 -39.22235 -36.24492 -34.71176 -34.05791 -33.31843 -32.15215 -31.91216 -30.60043 -29.55545 -28.55867 -25.80824 -25.15870 -24.72751 -24.31046 -23.65553 -23.08439 -21.44344 -20.11460 -19.37463 -18.93237 -18.45326 -17.92466 -17.49955 -17.13323 -16.74143 -16.06758 -15.95655 -15.73733 -15.37348 -15.30382 -15.20660 -15.11732 -15.04390 -14.49199 -14.22051 -14.14354 -14.00294 -13.71852 -13.53348 -13.35277 -13.27853 -13.02147 -12.88264 -12.83622 -12.74270 -12.59708 -12.51639 -12.29549 -12.21789 -11.91697 -11.78583 -11.70576 -11.49725 -11.33071 -10.97776 -10.94318 -10.81444 -10.63059 -9.76023 -9.50584 -8.98537 -8.23240 -5.17413 -0.31507 0.14363 1.49897 1.62730 1.71126 1.86673 1.87316 1.91801 2.56993 2.77909 3.01947 3.41234 3.52318 3.65349 3.68121 3.82923 3.84537 3.89208 4.01297 4.06542 4.06967 4.13861 4.18852 4.27737 4.31366 4.37673 4.52669 4.55410 4.66561 4.68015 4.76327 4.76614 4.80887 4.87094 4.89821 4.90190 4.93592 4.95789 4.98200 5.04403 5.13293 5.15197 5.22460 5.24702 5.44384 5.46988 5.56226 5.76903 6.13490 6.30747 6.63041 6.67579 6.99649 7.21553 8.12494 8.25738 9.28201 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003443 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.938962 B = 8131.492385 C = 9410.061037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 O -0.315 6.315 4 C 0.354 3.646 5 N -0.550 5.550 6 C 0.182 3.818 7 C -0.103 4.103 8 C -0.204 4.204 9 C -0.008 4.008 10 C -0.230 4.230 11 C 0.571 3.429 12 O -0.573 6.573 13 N -0.592 5.592 14 C 0.121 3.879 15 C -0.121 4.121 16 C 0.196 3.804 17 C -0.142 4.142 18 N -0.734 5.734 19 C -0.300 4.300 20 H 0.068 0.932 21 C -0.105 4.105 22 N -0.983 5.983 23 Si 1.117 2.883 24 H -0.302 1.302 25 H -0.285 1.285 26 H -0.276 1.276 27 C -0.127 4.127 28 C 0.128 3.872 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.180 0.820 38 H 0.151 0.849 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.358 0.642 47 H 0.243 0.757 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 -22.606 -3.617 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.222 6.222 4 C 0.175 3.825 5 N -0.275 5.275 6 C 0.045 3.955 7 C -0.160 4.160 8 C -0.223 4.223 9 C -0.034 4.034 10 C -0.236 4.236 11 C 0.360 3.640 12 O -0.453 6.453 13 N -0.324 5.324 14 C -0.002 4.002 15 C -0.159 4.159 16 C 0.106 3.894 17 C -0.201 4.201 18 N -0.377 5.377 19 C -0.432 4.432 20 H 0.086 0.914 21 C -0.296 4.296 22 N -0.632 5.632 23 Si 0.944 3.056 24 H -0.228 1.228 25 H -0.211 1.211 26 H -0.203 1.203 27 C -0.167 4.167 28 C 0.006 3.994 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.197 0.803 38 H 0.168 0.832 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.191 0.809 47 H 0.053 0.947 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.714 -22.434 -3.481 22.767 hybrid contribution -1.190 0.626 -0.643 1.491 sum -2.904 -21.808 -4.125 22.384 Atomic orbital electron populations 1.21839 0.91473 1.04355 1.02849 1.22870 0.96133 0.79625 1.02682 1.86322 1.16637 1.32640 1.86561 1.19708 0.84532 0.88554 0.89685 1.67322 1.07014 1.31550 1.21638 1.21907 0.88312 0.97114 0.88198 1.20939 0.98178 0.92150 1.04740 1.22130 1.03151 0.91020 1.06039 1.21801 0.89952 1.01464 0.90158 1.19778 0.95298 0.91636 1.16897 1.18188 0.82917 0.82223 0.80717 1.90716 1.36049 1.78756 1.39811 1.48026 1.40732 1.17846 1.25775 1.21470 0.94797 0.85289 0.98632 1.22021 0.97644 1.02778 0.93478 1.19725 0.88304 0.87940 0.93457 1.22107 0.99576 1.00552 0.97905 1.42662 1.29445 1.37253 1.28343 1.20145 1.04245 1.14468 1.04336 0.91420 1.26791 1.04344 0.95610 1.02834 1.70988 1.34939 1.42318 1.14945 0.82732 0.73702 0.75936 0.73195 1.22837 1.21144 1.20260 1.22195 0.99900 0.97911 0.96723 1.21629 0.91097 1.01450 0.85274 0.92162 0.92435 0.87353 0.91348 0.91021 0.88397 0.87546 0.90130 0.80292 0.83182 0.89795 0.92474 0.90306 0.90363 0.94012 0.91677 0.93904 0.80912 0.94695 0.91380 0.91704 0.89579 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.06 1.36 6.03 71.98 0.43 1.79 16 3 O -0.31 -9.82 9.31 -83.91 -0.78 -10.60 16 4 C 0.35 10.72 7.50 85.13 0.64 11.35 16 5 N -0.55 -13.77 9.11 -296.05 -2.70 -16.46 16 6 C 0.18 3.49 6.78 42.58 0.29 3.77 16 7 C -0.10 -1.05 10.16 71.24 0.72 -0.33 16 8 C -0.20 -3.76 9.71 22.32 0.22 -3.54 16 9 C -0.01 -0.20 7.92 22.72 0.18 -0.02 16 10 C -0.23 -7.16 4.62 -19.91 -0.09 -7.26 16 11 C 0.57 20.90 6.86 86.69 0.59 21.50 16 12 O -0.57 -24.54 16.17 -0.66 -0.01 -24.55 16 13 N -0.59 -20.66 2.97 -822.72 -2.44 -23.10 16 14 C 0.12 4.25 6.17 86.36 0.53 4.78 16 15 C -0.12 -3.97 4.96 30.67 0.15 -3.82 16 16 C 0.20 7.15 0.74 3.63 0.00 7.15 16 17 C -0.14 -4.92 8.44 71.98 0.61 -4.31 16 18 N -0.73 -33.44 4.13 -303.24 -1.25 -34.70 16 19 C -0.30 -15.29 8.68 84.03 0.73 -14.56 16 20 H 0.07 3.37 6.70 -2.91 -0.02 3.35 16 21 C -0.10 -5.74 5.50 84.86 0.47 -5.27 16 22 N -0.98 -59.22 13.70 21.65 0.30 -58.93 16 23 Si 1.12 50.04 29.92 68.60 2.05 52.09 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 27 C -0.13 -4.31 4.70 30.66 0.14 -4.16 16 28 C 0.13 4.28 5.35 86.36 0.46 4.74 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.07 1.43 8.10 -2.39 -0.02 1.42 16 33 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 0.60 8.07 -2.39 -0.02 0.58 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.15 3.57 7.80 -2.91 -0.02 3.55 16 39 H 0.08 2.98 7.00 -2.39 -0.02 2.97 16 40 H 0.06 2.19 6.94 -2.39 -0.02 2.17 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.04 1.58 7.27 -2.38 -0.02 1.57 16 46 H 0.36 17.57 5.29 -92.72 -0.49 17.08 16 47 H 0.24 14.61 6.77 -92.71 -0.63 13.98 16 48 H 0.07 2.42 7.31 -2.39 -0.02 2.40 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.09 2.56 5.38 -2.39 -0.01 2.55 16 51 H 0.06 2.42 7.74 -2.39 -0.02 2.41 16 Total: -1.00 -71.81 402.99 2.57 -69.25 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: 0.58 Total: 37.04 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.82 Total: 9.97 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -6.10 Total: -133.19 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.79 Total: -35.15 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -71.81 2.57 -69.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274389558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.247 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds