Wall clock time and date at job start Wed Apr 1 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21275 * 119.99959 * 2 1 4 4 N 1.34780 * 119.99719 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00153 * 5.25115 * 4 2 1 6 6 C 1.46498 * 119.99312 * 185.24803 * 4 2 1 7 7 C 1.50697 * 109.47248 * 269.99779 * 6 4 2 8 8 O 1.21282 * 120.00122 * 0.02562 * 7 6 4 9 9 N 1.34781 * 120.00107 * 180.02562 * 7 6 4 10 10 C 1.46494 * 120.00108 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47028 * 325.00384 * 10 9 7 12 12 C 1.53002 * 109.47067 * 205.00051 * 10 9 7 13 13 C 1.52993 * 109.47337 * 65.00041 * 12 10 9 14 14 C 1.52992 * 109.47312 * 179.97438 * 13 12 10 15 15 N 1.46508 * 109.47027 * 180.02562 * 14 13 12 16 16 C 1.36942 * 119.99726 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00112 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99822 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00147 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46730 * 59.99870 * 20 18 16 22 22 H 1.48493 * 109.47144 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47009 * 300.00281 * 20 18 16 24 24 C 1.50704 * 109.47180 * 84.99781 * 10 9 7 25 25 C 1.38234 * 119.99824 * 39.73072 * 24 10 9 26 26 C 1.38229 * 120.00012 * 179.78549 * 25 24 10 27 27 C 1.38235 * 120.00322 * 0.43979 * 26 25 24 28 28 C 1.38244 * 119.99584 * 359.81388 * 27 26 25 29 29 C 1.38233 * 119.99959 * 219.99642 * 24 10 9 30 30 H 1.09001 * 109.47079 * 264.66199 * 1 2 3 31 31 H 1.08996 * 109.47136 * 24.66583 * 1 2 3 32 32 H 1.09003 * 109.46826 * 144.66900 * 1 2 3 33 33 H 1.09001 * 109.46979 * 274.55037 * 5 4 2 34 34 H 1.08998 * 109.46971 * 34.55478 * 5 4 2 35 35 H 1.09000 * 109.47088 * 154.55505 * 5 4 2 36 36 H 1.09003 * 109.46778 * 150.00096 * 6 4 2 37 37 H 1.09000 * 109.47266 * 30.00707 * 6 4 2 38 38 H 0.97003 * 119.99853 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.46782 * 304.99632 * 12 10 9 40 40 H 1.08998 * 109.46650 * 185.00050 * 12 10 9 41 41 H 1.09008 * 109.47268 * 59.99842 * 13 12 10 42 42 H 1.09000 * 109.46993 * 300.00101 * 13 12 10 43 43 H 1.09006 * 109.47118 * 299.99567 * 14 13 12 44 44 H 1.08997 * 109.47232 * 60.00220 * 14 13 12 45 45 H 0.96999 * 120.00174 * 359.97438 * 15 14 13 46 46 H 0.97002 * 120.00606 * 180.02562 * 19 18 16 47 47 H 1.07999 * 120.00146 * 359.97438 * 25 24 10 48 48 H 1.07999 * 120.00235 * 180.27213 * 26 25 24 49 49 H 1.08000 * 120.00746 * 179.83109 * 27 26 25 50 50 H 1.07996 * 119.99821 * 179.97438 * 28 27 26 51 51 H 1.07994 * 120.00501 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4530 -2.4333 -0.1150 6 6 3.6413 -1.1698 0.1166 7 6 4.2546 -1.1063 -1.2585 8 8 3.5420 -1.0628 -2.2389 9 7 5.5951 -1.0980 -1.3988 10 6 6.1913 -1.0358 -2.7355 11 1 5.5710 -1.5945 -3.4363 12 6 7.5939 -1.6458 -2.6972 13 6 7.4929 -3.1365 -2.3680 14 6 8.8954 -3.7466 -2.3304 15 7 8.7986 -5.1743 -2.0158 16 6 9.9342 -5.9346 -1.9284 17 1 10.9010 -5.4820 -2.0917 18 6 9.8425 -7.2871 -1.6298 19 7 8.6642 -7.8389 -1.4313 20 14 11.3914 -8.3245 -1.5112 21 1 12.2710 -7.7807 -0.4455 22 1 11.0249 -9.7255 -1.1828 23 1 12.1098 -8.2918 -2.8105 24 6 6.2806 0.4017 -3.1793 25 6 6.6396 1.3833 -2.2746 26 6 6.7258 2.7012 -2.6827 27 6 6.4442 3.0388 -3.9933 28 6 6.0801 2.0578 -4.8968 29 6 5.9981 0.7392 -4.4897 30 1 -0.3633 -0.0956 1.0232 31 1 -0.3633 0.9339 -0.4289 32 1 -0.3633 -0.8384 -0.5943 33 1 1.1208 -2.7529 0.8727 34 1 0.5873 -2.2968 -0.7630 35 1 2.1094 -3.1923 -0.5407 36 1 3.9644 -2.0828 0.6168 37 1 3.9611 -0.3047 0.6974 38 1 6.1650 -1.1324 -0.6146 39 1 8.1874 -1.1443 -1.9328 40 1 8.0715 -1.5198 -3.6688 41 1 6.8993 -3.6380 -3.1325 42 1 7.0153 -3.2625 -1.3964 43 1 9.3727 -3.6207 -3.3023 44 1 9.4893 -3.2453 -1.5662 45 1 7.9302 -5.5809 -1.8695 46 1 8.6001 -8.7839 -1.2223 47 1 6.8556 1.1202 -1.2497 48 1 7.0105 3.4675 -1.9770 49 1 6.5088 4.0688 -4.3116 50 1 5.8596 2.3215 -5.9206 51 1 5.7139 -0.0271 -5.1955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277542373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:50 Heat of formation + Delta-G solvation = -37.380651 kcal Electronic energy + Delta-G solvation = -30361.851693 eV Core-core repulsion = 26261.383967 eV Total energy + Delta-G solvation = -4100.467727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.61274 -39.76449 -38.65149 -36.52896 -35.58883 -34.77272 -32.68997 -31.75064 -30.95887 -30.72569 -30.10263 -28.33972 -27.01224 -26.04842 -24.13404 -22.74221 -22.32499 -21.43078 -20.81920 -20.39629 -19.50253 -17.60383 -17.32878 -17.11328 -16.93323 -16.65404 -15.91263 -15.49818 -15.49066 -14.83113 -14.74738 -14.61097 -14.32419 -13.87304 -13.68533 -13.55672 -13.45553 -13.36290 -13.24233 -13.04774 -13.01677 -12.86058 -12.62757 -12.30640 -12.20392 -11.98460 -11.80468 -11.63740 -11.16988 -11.06833 -10.86179 -10.82357 -10.57159 -10.46482 -10.18772 -10.08280 -10.07407 -9.71496 -9.20982 -8.96169 -8.94382 -8.87267 -8.71836 -6.92819 -5.77325 -3.05929 1.28449 1.36933 2.32018 2.58207 2.62710 3.22934 3.43286 3.47494 3.48643 3.75610 4.33253 4.53066 4.63198 4.67092 4.75914 4.80371 4.84094 4.91152 4.98832 5.01132 5.03142 5.05510 5.09117 5.16613 5.26493 5.37873 5.38762 5.43778 5.53073 5.55791 5.60693 5.68085 5.85212 5.92150 5.97578 6.02395 6.07613 6.16403 6.30007 6.32349 6.38869 6.41450 6.45237 6.62841 6.84471 6.88131 6.94779 7.04667 7.40220 7.68709 7.90428 8.16621 8.41930 9.52727 10.11346 10.45781 11.45634 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008471 B = 0.002644 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.675828 B =10588.023503 C =13317.928480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.516 3.484 3 O -0.543 6.543 4 N -0.601 5.601 5 C 0.081 3.919 6 C 0.094 3.906 7 C 0.501 3.499 8 O -0.528 6.528 9 N -0.719 5.719 10 C 0.188 3.812 11 H 0.096 0.904 12 C -0.117 4.117 13 C -0.123 4.123 14 C 0.153 3.847 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.088 4.088 25 C -0.103 4.103 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.105 4.105 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.402 0.598 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 19.307 2.013 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.305 3.695 3 O -0.420 6.420 4 N -0.334 5.334 5 C -0.062 4.062 6 C -0.032 4.032 7 C 0.286 3.714 8 O -0.404 6.404 9 N -0.372 5.372 10 C 0.083 3.917 11 H 0.114 0.886 12 C -0.155 4.155 13 C -0.161 4.161 14 C 0.025 3.975 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.090 4.090 25 C -0.122 4.122 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.124 4.124 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.065 0.935 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.138 0.862 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.684 19.816 1.307 24.698 hybrid contribution 0.881 -0.875 0.424 1.312 sum -13.803 18.941 1.731 23.501 Atomic orbital electron populations 1.21948 0.91490 1.05214 1.04520 1.20821 0.90765 0.82879 0.74996 1.90720 1.70734 1.31124 1.49388 1.47449 1.05432 1.07235 1.73317 1.21878 0.97679 0.85013 1.01649 1.21330 0.81322 1.05634 0.94963 1.21109 0.82412 0.75812 0.92068 1.90693 1.60941 1.48409 1.40323 1.46012 1.06545 1.75484 1.09127 1.19908 0.95406 0.91763 0.84612 0.88570 1.21826 0.93961 0.96368 1.03366 1.21723 0.99137 0.93416 1.01854 1.20640 0.93339 0.86259 0.97225 1.42366 1.06884 1.03386 1.85192 1.19199 0.87039 0.90744 1.40099 0.91268 1.24743 0.96695 0.96891 1.02738 1.69648 1.21847 1.11827 1.55043 0.86260 0.82488 0.79562 0.77846 1.21272 1.21669 1.21257 1.20227 0.98994 0.95682 0.94050 1.20886 0.99397 0.92697 0.99181 1.21102 1.00448 0.96269 0.96136 1.21118 1.00151 0.99181 0.93793 1.21105 1.00195 0.93055 0.99552 1.21006 0.99301 0.96481 0.95562 0.88842 0.89043 0.89657 0.92099 0.90708 0.90491 0.87072 0.87067 0.76377 0.91148 0.90116 0.91911 0.91934 0.96466 0.96496 0.78358 0.93482 0.86445 0.86301 0.86387 0.86208 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.69 36.01 0.35 -0.86 16 2 C 0.52 5.91 7.76 -10.98 -0.09 5.83 16 3 O -0.54 -8.53 16.73 5.56 0.09 -8.43 16 4 N -0.60 -5.95 2.36 -182.96 -0.43 -6.38 16 5 C 0.08 0.55 10.11 59.85 0.60 1.15 16 6 C 0.09 0.91 5.83 -5.20 -0.03 0.88 16 7 C 0.50 6.31 7.85 -10.99 -0.09 6.22 16 8 O -0.53 -8.73 16.09 5.56 0.09 -8.64 16 9 N -0.72 -7.81 3.76 -54.93 -0.21 -8.01 16 10 C 0.19 2.26 2.17 -69.08 -0.15 2.11 16 11 H 0.10 1.33 7.44 -51.93 -0.39 0.94 16 12 C -0.12 -1.40 4.73 -26.73 -0.13 -1.53 16 13 C -0.12 -1.87 5.21 -26.74 -0.14 -2.01 16 14 C 0.15 3.01 6.26 -4.04 -0.03 2.98 16 15 N -0.73 -18.62 5.60 -59.91 -0.34 -18.96 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 C -0.09 -1.09 4.91 -104.62 -0.51 -1.61 16 25 C -0.10 -1.21 9.33 -39.59 -0.37 -1.58 16 26 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 29 C -0.10 -1.29 9.67 -39.58 -0.38 -1.67 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.45 6.09 -51.93 -0.32 0.13 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.44 6.16 -51.93 -0.32 0.12 16 35 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 36 H 0.11 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.11 1.05 7.50 -51.93 -0.39 0.66 16 38 H 0.40 3.40 8.60 -40.82 -0.35 3.05 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 42 H 0.06 0.93 7.75 -51.93 -0.40 0.52 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.12 1.19 7.71 -52.49 -0.40 0.79 16 48 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 51 H 0.12 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 426.16 15.07 6.42 6.42 Total: -1.00 -37.89 426.16 -9.40 -47.29 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -8.34 Total: 9.56 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.39 Total: -2.70 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.25 Total: -60.86 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.18 Total: -17.07 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -37.89 -9.40 -47.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277542373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.908 kcal (2) G-P(sol) polarization free energy of solvation -37.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds