Wall clock time and date at job start Wed Apr 1 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21275 * 119.99959 * 2 1 4 4 N 1.34780 * 119.99719 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00153 * 5.25115 * 4 2 1 6 6 C 1.46498 * 119.99312 * 185.24803 * 4 2 1 7 7 C 1.50697 * 109.47248 * 269.99779 * 6 4 2 8 8 O 1.21282 * 120.00122 * 0.02562 * 7 6 4 9 9 N 1.34781 * 120.00107 * 180.02562 * 7 6 4 10 10 C 1.46494 * 120.00108 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47028 * 325.00384 * 10 9 7 12 12 C 1.53002 * 109.47067 * 205.00051 * 10 9 7 13 13 C 1.52993 * 109.47337 * 65.00041 * 12 10 9 14 14 C 1.52992 * 109.47312 * 179.97438 * 13 12 10 15 15 N 1.46508 * 109.47027 * 180.02562 * 14 13 12 16 16 C 1.36942 * 119.99726 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00112 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99822 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00147 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46730 * 59.99870 * 20 18 16 22 22 H 1.48493 * 109.47144 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47009 * 300.00281 * 20 18 16 24 24 C 1.50704 * 109.47180 * 84.99781 * 10 9 7 25 25 C 1.38234 * 119.99824 * 39.73072 * 24 10 9 26 26 C 1.38229 * 120.00012 * 179.78549 * 25 24 10 27 27 C 1.38235 * 120.00322 * 0.43979 * 26 25 24 28 28 C 1.38244 * 119.99584 * 359.81388 * 27 26 25 29 29 C 1.38233 * 119.99959 * 219.99642 * 24 10 9 30 30 H 1.09001 * 109.47079 * 264.66199 * 1 2 3 31 31 H 1.08996 * 109.47136 * 24.66583 * 1 2 3 32 32 H 1.09003 * 109.46826 * 144.66900 * 1 2 3 33 33 H 1.09001 * 109.46979 * 274.55037 * 5 4 2 34 34 H 1.08998 * 109.46971 * 34.55478 * 5 4 2 35 35 H 1.09000 * 109.47088 * 154.55505 * 5 4 2 36 36 H 1.09003 * 109.46778 * 150.00096 * 6 4 2 37 37 H 1.09000 * 109.47266 * 30.00707 * 6 4 2 38 38 H 0.97003 * 119.99853 * 359.97438 * 9 7 6 39 39 H 1.08995 * 109.46782 * 304.99632 * 12 10 9 40 40 H 1.08998 * 109.46650 * 185.00050 * 12 10 9 41 41 H 1.09008 * 109.47268 * 59.99842 * 13 12 10 42 42 H 1.09000 * 109.46993 * 300.00101 * 13 12 10 43 43 H 1.09006 * 109.47118 * 299.99567 * 14 13 12 44 44 H 1.08997 * 109.47232 * 60.00220 * 14 13 12 45 45 H 0.96999 * 120.00174 * 359.97438 * 15 14 13 46 46 H 0.97002 * 120.00606 * 180.02562 * 19 18 16 47 47 H 1.07999 * 120.00146 * 359.97438 * 25 24 10 48 48 H 1.07999 * 120.00235 * 180.27213 * 26 25 24 49 49 H 1.08000 * 120.00746 * 179.83109 * 27 26 25 50 50 H 1.07996 * 119.99821 * 179.97438 * 28 27 26 51 51 H 1.07994 * 120.00501 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4530 -2.4333 -0.1150 6 6 3.6413 -1.1698 0.1166 7 6 4.2546 -1.1063 -1.2585 8 8 3.5420 -1.0628 -2.2389 9 7 5.5951 -1.0980 -1.3988 10 6 6.1913 -1.0358 -2.7355 11 1 5.5710 -1.5945 -3.4363 12 6 7.5939 -1.6458 -2.6972 13 6 7.4929 -3.1365 -2.3680 14 6 8.8954 -3.7466 -2.3304 15 7 8.7986 -5.1743 -2.0158 16 6 9.9342 -5.9346 -1.9284 17 1 10.9010 -5.4820 -2.0917 18 6 9.8425 -7.2871 -1.6298 19 7 8.6642 -7.8389 -1.4313 20 14 11.3914 -8.3245 -1.5112 21 1 12.2710 -7.7807 -0.4455 22 1 11.0249 -9.7255 -1.1828 23 1 12.1098 -8.2918 -2.8105 24 6 6.2806 0.4017 -3.1793 25 6 6.6396 1.3833 -2.2746 26 6 6.7258 2.7012 -2.6827 27 6 6.4442 3.0388 -3.9933 28 6 6.0801 2.0578 -4.8968 29 6 5.9981 0.7392 -4.4897 30 1 -0.3633 -0.0956 1.0232 31 1 -0.3633 0.9339 -0.4289 32 1 -0.3633 -0.8384 -0.5943 33 1 1.1208 -2.7529 0.8727 34 1 0.5873 -2.2968 -0.7630 35 1 2.1094 -3.1923 -0.5407 36 1 3.9644 -2.0828 0.6168 37 1 3.9611 -0.3047 0.6974 38 1 6.1650 -1.1324 -0.6146 39 1 8.1874 -1.1443 -1.9328 40 1 8.0715 -1.5198 -3.6688 41 1 6.8993 -3.6380 -3.1325 42 1 7.0153 -3.2625 -1.3964 43 1 9.3727 -3.6207 -3.3023 44 1 9.4893 -3.2453 -1.5662 45 1 7.9302 -5.5809 -1.8695 46 1 8.6001 -8.7839 -1.2223 47 1 6.8556 1.1202 -1.2497 48 1 7.0105 3.4675 -1.9770 49 1 6.5088 4.0688 -4.3116 50 1 5.8596 2.3215 -5.9206 51 1 5.7139 -0.0271 -5.1955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277542373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:49 Heat of formation + Delta-G solvation = -61.966763 kcal Electronic energy + Delta-G solvation = -30362.917827 eV Core-core repulsion = 26261.383967 eV Total energy + Delta-G solvation = -4101.533860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52836 -40.63750 -39.58452 -37.74545 -36.58898 -36.23384 -34.22488 -32.95001 -31.79751 -31.66436 -31.44923 -29.12747 -28.17932 -26.92539 -25.70458 -23.88570 -23.53908 -22.37083 -22.21029 -21.35772 -20.30216 -19.13730 -18.47443 -18.15932 -17.84957 -17.53663 -16.81832 -16.67072 -16.39984 -16.27391 -15.94745 -15.64524 -15.45859 -15.30169 -15.12761 -14.62688 -14.41049 -14.30654 -14.24156 -13.93153 -13.92600 -13.62165 -13.48947 -13.32961 -13.21495 -12.98882 -12.89200 -12.71010 -12.62891 -12.59376 -12.22731 -12.10312 -11.94586 -11.89254 -11.75120 -11.64755 -11.19419 -10.97608 -10.91985 -10.20100 -9.82391 -9.77483 -9.60502 -8.99863 -7.95188 -5.24182 0.40385 0.49443 1.47640 1.48710 1.50639 1.56818 1.61727 1.90313 2.37185 2.56203 2.87104 3.38355 3.55678 3.68361 3.79655 3.90957 3.96633 4.07678 4.11855 4.15688 4.19199 4.21673 4.26747 4.34056 4.41013 4.45999 4.55201 4.56784 4.61883 4.69458 4.74441 4.78598 4.84256 4.88072 4.89255 5.04855 5.08167 5.10948 5.13537 5.31954 5.33087 5.41109 5.43006 5.50245 5.55027 5.59851 5.72201 6.10181 6.27479 6.31188 6.51227 7.09247 7.23822 7.33428 8.10080 8.32852 9.28234 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008471 B = 0.002644 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.675828 B =10588.023503 C =13317.928480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.503 3.497 3 O -0.597 6.597 4 N -0.602 5.602 5 C 0.075 3.925 6 C 0.093 3.907 7 C 0.497 3.503 8 O -0.574 6.574 9 N -0.709 5.709 10 C 0.197 3.803 11 H 0.074 0.926 12 C -0.102 4.102 13 C -0.108 4.108 14 C 0.151 3.849 15 N -0.749 5.749 16 C -0.248 4.248 17 H 0.075 0.925 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.279 1.279 24 C -0.102 4.102 25 C -0.115 4.115 26 C -0.130 4.130 27 C -0.129 4.129 28 C -0.129 4.129 29 C -0.127 4.127 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.415 0.585 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.016 0.984 44 H 0.026 0.974 45 H 0.373 0.627 46 H 0.252 0.748 47 H 0.130 0.870 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.139 0.861 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.324 20.037 2.908 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.294 3.706 3 O -0.478 6.478 4 N -0.334 5.334 5 C -0.066 4.066 6 C -0.034 4.034 7 C 0.283 3.717 8 O -0.452 6.452 9 N -0.362 5.362 10 C 0.091 3.909 11 H 0.092 0.908 12 C -0.140 4.140 13 C -0.146 4.146 14 C 0.024 3.976 15 N -0.391 5.391 16 C -0.380 4.380 17 H 0.093 0.907 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.205 1.205 24 C -0.104 4.104 25 C -0.133 4.133 26 C -0.148 4.148 27 C -0.147 4.147 28 C -0.147 4.147 29 C -0.145 4.145 30 H 0.137 0.863 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.252 0.748 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.033 0.967 44 H 0.044 0.956 45 H 0.205 0.795 46 H 0.061 0.939 47 H 0.148 0.852 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.157 0.843 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.353 20.551 2.214 25.165 hybrid contribution 0.787 -1.045 0.106 1.312 sum -13.566 19.506 2.320 23.873 Atomic orbital electron populations 1.21979 0.88226 1.05783 1.06477 1.21654 0.92531 0.82452 0.73938 1.90683 1.72061 1.32960 1.52102 1.47662 1.05655 1.07977 1.72135 1.22098 0.97573 0.83410 1.03553 1.21474 0.81504 1.07214 0.93189 1.21688 0.82545 0.74737 0.92729 1.90667 1.61961 1.50645 1.41973 1.45947 1.06427 1.74569 1.09271 1.19676 0.94751 0.91700 0.84741 0.90817 1.21676 0.94290 0.94024 1.04003 1.21546 0.96211 0.95039 1.01774 1.20823 0.96061 0.83696 0.96976 1.42605 1.05770 1.05495 1.85247 1.19615 0.88090 0.91364 1.38946 0.90728 1.25580 0.99708 0.98226 1.03283 1.69804 1.23893 1.11782 1.56537 0.85211 0.78979 0.77461 0.78118 1.20201 1.22046 1.20527 1.20276 0.99907 0.95744 0.94435 1.21114 0.99510 0.93017 0.99682 1.21450 0.99977 0.96530 0.96841 1.21478 0.99274 1.00330 0.93658 1.21402 0.99824 0.92697 1.00765 1.21210 1.00134 0.97329 0.95848 0.86272 0.89559 0.87723 0.89263 0.89702 0.91214 0.83960 0.86875 0.74808 0.89418 0.89975 0.93281 0.91409 0.96651 0.95614 0.79510 0.93946 0.85217 0.84243 0.83972 0.84348 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.69 71.24 0.69 -1.38 16 2 C 0.50 11.34 7.76 87.66 0.68 12.02 16 3 O -0.60 -19.17 16.73 -3.02 -0.05 -19.22 16 4 N -0.60 -11.38 2.36 -851.13 -2.01 -13.39 16 5 C 0.08 0.90 10.11 127.77 1.29 2.19 16 6 C 0.09 1.72 5.83 85.63 0.50 2.22 16 7 C 0.50 12.53 7.85 87.66 0.69 13.22 16 8 O -0.57 -19.50 16.09 -3.03 -0.05 -19.55 16 9 N -0.71 -15.09 3.76 -446.10 -1.68 -16.77 16 10 C 0.20 4.73 2.17 44.25 0.10 4.83 16 11 H 0.07 2.13 7.44 -2.39 -0.02 2.11 16 12 C -0.10 -2.35 4.73 30.59 0.14 -2.20 16 13 C -0.11 -3.21 5.21 30.59 0.16 -3.05 16 14 C 0.15 5.82 6.26 86.38 0.54 6.36 16 15 N -0.75 -38.00 5.60 -343.45 -1.92 -39.92 16 16 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 17 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 19 N -0.97 -59.06 13.06 21.65 0.28 -58.77 16 20 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 C -0.10 -2.53 4.91 -19.87 -0.10 -2.63 16 25 C -0.12 -2.58 9.33 22.27 0.21 -2.38 16 26 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 27 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 28 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 29 C -0.13 -3.14 9.67 22.27 0.22 -2.92 16 30 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 0.88 6.09 -2.39 -0.01 0.87 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.83 6.16 -2.39 -0.01 0.82 16 35 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 36 H 0.14 1.67 8.07 -2.39 -0.02 1.65 16 37 H 0.11 2.07 7.50 -2.39 -0.02 2.05 16 38 H 0.41 6.48 8.60 -92.71 -0.80 5.69 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.07 1.95 7.75 -2.39 -0.02 1.93 16 43 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.37 20.09 7.67 -92.71 -0.71 19.37 16 46 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 47 H 0.13 2.46 7.71 -2.91 -0.02 2.44 16 48 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 49 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 50 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 51 H 0.12 2.86 8.04 -2.91 -0.02 2.83 16 Total: -1.00 -83.26 426.16 3.12 -80.15 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.57 Total: 37.69 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 7.09 Total: 1.95 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -5.33 Total: -128.85 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.10 Total: -38.77 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -83.26 3.12 -80.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277542373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.179 kcal (2) G-P(sol) polarization free energy of solvation -83.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds