Wall clock time and date at job start Wed Apr 1 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42892 * 109.46882 * 2 1 4 4 C 1.35429 * 116.99911 * 180.02562 * 3 2 1 5 5 N 1.32237 * 119.79941 * 0.31049 * 4 3 2 6 6 C 1.31885 * 121.80071 * 180.31461 * 5 4 3 7 7 C 1.38349 * 121.18253 * 359.65454 * 6 5 4 8 8 C 1.38334 * 119.46229 * 0.02569 * 7 6 5 9 9 C 1.39991 * 118.34782 * 359.97438 * 8 7 6 10 10 C 1.47521 * 120.59376 * 180.02562 * 9 8 7 11 11 O 1.21598 * 119.99852 * 179.97438 * 10 9 8 12 12 N 1.34770 * 120.00454 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99978 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46979 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47040 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46895 * 174.93436 * 15 14 13 17 17 H 1.09007 * 109.87324 * 306.13617 * 16 15 14 18 18 C 1.54321 * 110.01252 * 67.23881 * 16 15 14 19 19 C 1.55149 * 102.94179 * 141.68277 * 18 16 15 20 20 C 1.54908 * 101.58153 * 324.49640 * 19 18 16 21 21 N 1.47023 * 109.87930 * 185.12435 * 16 15 14 22 22 C 1.36931 * 125.65028 * 61.45423 * 21 16 15 23 23 H 1.08002 * 120.00168 * 14.67814 * 22 21 16 24 24 C 1.38815 * 119.99820 * 194.68515 * 22 21 16 25 25 N 1.31619 * 120.00482 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99755 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47358 * 89.99886 * 26 24 22 28 28 H 1.48503 * 109.46945 * 209.99344 * 26 24 22 29 29 H 1.48497 * 109.47433 * 329.99444 * 26 24 22 30 30 H 1.08996 * 109.47393 * 60.00007 * 1 2 3 31 31 H 1.08998 * 109.47150 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47138 * 300.00049 * 1 2 3 33 33 H 1.09003 * 109.46921 * 239.99554 * 2 1 3 34 34 H 1.09000 * 109.46774 * 120.00332 * 2 1 3 35 35 H 1.07998 * 119.40474 * 179.67938 * 6 5 4 36 36 H 1.08004 * 120.27210 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.83026 * 179.97438 * 8 7 6 38 38 H 0.96998 * 120.00251 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.46704 * 60.00456 * 13 12 10 40 40 H 1.08991 * 109.47259 * 300.00065 * 13 12 10 41 41 H 1.08996 * 109.47046 * 60.00171 * 14 13 12 42 42 H 1.09001 * 109.47140 * 300.00302 * 14 13 12 43 43 H 1.09003 * 109.46886 * 54.93221 * 15 14 13 44 44 H 1.08996 * 109.46795 * 294.93480 * 15 14 13 45 45 H 1.08995 * 110.72025 * 23.31644 * 18 16 15 46 46 H 1.09007 * 110.71831 * 260.04719 * 18 16 15 47 47 H 1.09007 * 111.00405 * 206.42347 * 19 18 16 48 48 H 1.08997 * 111.01050 * 82.57372 * 19 18 16 49 49 H 1.09003 * 110.36843 * 155.85490 * 20 19 18 50 50 H 1.09001 * 110.36413 * 278.06156 * 20 19 18 51 51 H 0.96995 * 120.00670 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0073 6 6 5.4635 0.6002 -0.0019 7 6 6.0625 1.8473 0.0040 8 6 5.2713 2.9821 0.0047 9 6 3.8805 2.8228 -0.0011 10 6 2.9901 3.9990 -0.0011 11 8 1.7835 3.8481 -0.0066 12 7 3.5138 5.2407 0.0050 13 6 2.6294 6.4087 0.0043 14 6 3.4716 7.6861 0.0126 15 6 2.5479 8.9059 0.0126 16 6 3.3850 10.1794 0.1482 17 1 4.0297 10.1075 1.0243 18 6 4.2419 10.3855 -1.1185 19 6 4.1922 11.9224 -1.3254 20 6 2.7501 12.2516 -0.8654 21 7 2.5013 11.3478 0.2724 22 6 1.5964 11.5608 1.2778 23 1 1.6464 10.9734 2.1827 24 6 0.6148 12.5317 1.1338 25 7 0.5540 13.2478 0.0312 26 14 -0.6201 12.8217 2.5051 27 1 -0.0913 13.8486 3.4385 28 1 -1.9026 13.2943 1.9245 29 1 -0.8481 11.5531 3.2425 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 6.0819 -0.2852 -0.0025 36 1 7.1390 1.9343 0.0079 37 1 5.7156 3.9665 0.0096 38 1 4.4763 5.3612 0.0090 39 1 1.9964 6.3856 0.8914 40 1 2.0045 6.3909 -0.8885 41 1 4.1049 7.7095 -0.8742 42 1 4.0962 7.7037 0.9057 43 1 1.8541 8.8362 0.8504 44 1 1.9875 8.9372 -0.9217 45 1 3.8017 9.8673 -1.9704 46 1 5.2659 10.0520 -0.9500 47 1 4.3360 12.1803 -2.3747 48 1 4.9271 12.4253 -0.6969 49 1 2.6819 13.2915 -0.5458 50 1 2.0413 12.0555 -1.6699 51 1 -0.1317 13.9265 -0.0692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317434362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:24 Heat of formation + Delta-G solvation = -24.804668 kcal Electronic energy + Delta-G solvation = -29800.134597 eV Core-core repulsion = 25700.212206 eV Total energy + Delta-G solvation = -4099.922391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21974 -39.27251 -38.32308 -37.80182 -35.46184 -33.47334 -32.67365 -32.33652 -31.97350 -30.39881 -29.35850 -28.03377 -25.35956 -24.78309 -24.33973 -23.42935 -22.61381 -21.50700 -20.76996 -20.11289 -19.13719 -18.94082 -17.75118 -17.30214 -16.69492 -16.62679 -15.74658 -15.58466 -15.42794 -15.02386 -14.71053 -14.52842 -14.23505 -14.16094 -13.93426 -13.76804 -13.41971 -12.97834 -12.82192 -12.69803 -12.64779 -12.29414 -12.01514 -11.90207 -11.77403 -11.67552 -11.42849 -11.05851 -11.00337 -10.78072 -10.70777 -10.53592 -10.38545 -10.37353 -10.06036 -9.97308 -9.84216 -9.73410 -9.59461 -9.56304 -9.12501 -8.84603 -8.53469 -6.73086 -5.70654 -3.05590 0.30890 0.82994 2.67307 2.72608 3.02647 3.41882 3.47804 3.49326 3.51150 3.85217 4.28281 4.40443 4.52281 4.55851 4.70298 4.74939 4.83839 4.96425 5.08422 5.12017 5.21547 5.36883 5.39156 5.41970 5.47752 5.59455 5.59707 5.63228 5.64508 5.76276 5.82322 5.88534 5.93918 6.00679 6.07467 6.14795 6.29819 6.37498 6.42230 6.46344 6.59693 6.73329 6.75500 6.93746 6.99706 7.20675 7.31031 7.45914 7.58389 7.67447 7.84363 8.16867 8.33781 9.24813 9.86419 10.55835 11.41785 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.001977 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.647054 B =14160.656970 C =15634.310185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.269 6.269 4 C 0.374 3.626 5 N -0.547 5.547 6 C 0.165 3.835 7 C -0.222 4.222 8 C -0.009 4.009 9 C -0.209 4.209 10 C 0.559 3.441 11 O -0.514 6.514 12 N -0.727 5.727 13 C 0.120 3.880 14 C -0.127 4.127 15 C -0.122 4.122 16 C 0.162 3.838 17 H 0.030 0.970 18 C -0.124 4.124 19 C -0.150 4.150 20 C 0.173 3.827 21 N -0.596 5.596 22 C -0.226 4.226 23 H 0.074 0.926 24 C -0.006 4.006 25 N -0.918 5.918 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.395 0.605 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.024 0.976 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.946 -25.598 -2.390 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.194 3.806 5 N -0.271 5.271 6 C 0.008 3.992 7 C -0.242 4.242 8 C -0.035 4.035 9 C -0.215 4.215 10 C 0.344 3.656 11 O -0.390 6.390 12 N -0.379 5.379 13 C -0.003 4.003 14 C -0.165 4.165 15 C -0.162 4.162 16 C 0.055 3.945 17 H 0.048 0.952 18 C -0.162 4.162 19 C -0.189 4.189 20 C 0.048 3.952 21 N -0.320 5.320 22 C -0.354 4.354 23 H 0.092 0.908 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.042 0.958 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.188 -26.161 -2.357 28.550 hybrid contribution 0.283 0.774 0.667 1.060 sum 11.471 -25.387 -1.690 27.909 Atomic orbital electron populations 1.21796 0.92677 1.02598 1.03912 1.22711 0.95347 0.81106 1.02247 1.86547 1.15441 1.29987 1.85309 1.19845 0.84778 0.88430 0.87536 1.67511 1.06653 1.32421 1.20560 1.22676 0.89176 0.97714 0.89667 1.21933 1.01789 0.92918 1.07569 1.21672 0.91176 1.00095 0.90510 1.20102 0.94301 0.92555 1.14567 1.17771 0.87818 0.82569 0.77399 1.90856 1.14156 1.85764 1.48221 1.45972 1.10405 1.05669 1.75873 1.21519 0.92881 0.83192 1.02693 1.21838 0.98944 0.93771 1.01991 1.22022 0.98344 0.93276 1.02551 1.20927 0.91333 0.87575 0.94683 0.95218 1.22586 0.98439 0.97045 0.98130 1.23011 1.00994 0.95349 0.99563 1.21396 0.88663 0.95869 0.89284 1.44538 1.43703 1.17394 1.26398 1.18960 1.05032 1.17272 0.94169 0.90822 1.24898 0.98298 0.99779 0.97263 1.69935 1.35644 1.25216 1.25719 0.86182 0.81002 0.77933 0.81051 1.21656 1.21689 1.20602 0.91410 0.90398 0.91399 0.91619 0.91635 0.81850 0.83781 0.83711 0.76999 0.91244 0.91334 0.91742 0.91759 0.91571 0.92221 0.92048 0.92683 0.92586 0.92520 0.91343 0.95843 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.60 6.03 37.16 0.22 0.82 16 3 O -0.27 -3.62 8.22 -39.75 -0.33 -3.95 16 4 C 0.37 4.57 7.51 -16.61 -0.12 4.45 16 5 N -0.55 -5.53 9.21 -12.98 -0.12 -5.65 16 6 C 0.16 1.12 11.17 -17.49 -0.20 0.92 16 7 C -0.22 -1.27 10.09 -39.51 -0.40 -1.67 16 8 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 9 C -0.21 -2.36 5.90 -104.69 -0.62 -2.98 16 10 C 0.56 7.69 7.77 -12.48 -0.10 7.59 16 11 O -0.51 -9.21 15.19 -16.49 -0.25 -9.46 16 12 N -0.73 -8.22 5.51 -61.35 -0.34 -8.56 16 13 C 0.12 1.60 5.67 -4.04 -0.02 1.57 16 14 C -0.13 -1.63 5.10 -26.73 -0.14 -1.77 16 15 C -0.12 -2.15 4.72 -26.73 -0.13 -2.28 16 16 C 0.16 3.21 3.16 -66.95 -0.21 3.00 16 17 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 18 C -0.12 -2.09 5.71 -24.90 -0.14 -2.23 16 19 C -0.15 -2.82 7.08 -24.59 -0.17 -2.99 16 20 C 0.17 4.19 5.41 -2.53 -0.01 4.18 16 21 N -0.60 -14.95 3.13 -162.58 -0.51 -15.46 16 22 C -0.23 -6.23 9.70 -15.06 -0.15 -6.37 16 23 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 25 N -0.92 -27.07 10.58 55.49 0.59 -26.49 16 26 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.16 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.14 0.39 8.06 -52.48 -0.42 -0.04 16 37 H 0.15 0.63 6.52 -52.49 -0.34 0.29 16 38 H 0.40 3.13 6.57 -40.82 -0.27 2.86 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.74 7.65 -51.93 -0.40 0.34 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.30 7.84 -51.93 -0.41 0.90 16 44 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 45 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 46 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.85 6.93 -51.93 -0.36 1.49 16 50 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 51 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 412.37 15.07 6.21 6.21 Total: -1.00 -34.89 412.37 -10.51 -45.40 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.47 Total: 0.06 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.27 Total: 0.66 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.38 Total: -56.17 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.58 Total: -13.41 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.89 -10.51 -45.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317434362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.591 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds