Wall clock time and date at job start Wed Apr 1 2020 05:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42892 * 109.46882 * 2 1 4 4 C 1.35429 * 116.99911 * 180.02562 * 3 2 1 5 5 N 1.32237 * 119.79941 * 0.31049 * 4 3 2 6 6 C 1.31885 * 121.80071 * 180.31461 * 5 4 3 7 7 C 1.38349 * 121.18253 * 359.65454 * 6 5 4 8 8 C 1.38334 * 119.46229 * 0.02569 * 7 6 5 9 9 C 1.39991 * 118.34782 * 359.97438 * 8 7 6 10 10 C 1.47521 * 120.59376 * 180.02562 * 9 8 7 11 11 O 1.21598 * 119.99852 * 179.97438 * 10 9 8 12 12 N 1.34770 * 120.00454 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99978 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46979 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47040 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46895 * 174.93436 * 15 14 13 17 17 H 1.09007 * 109.87324 * 306.13617 * 16 15 14 18 18 C 1.54321 * 110.01252 * 67.23881 * 16 15 14 19 19 C 1.55149 * 102.94179 * 141.68277 * 18 16 15 20 20 C 1.54908 * 101.58153 * 324.49640 * 19 18 16 21 21 N 1.47023 * 109.87930 * 185.12435 * 16 15 14 22 22 C 1.36931 * 125.65028 * 61.45423 * 21 16 15 23 23 H 1.08002 * 120.00168 * 14.67814 * 22 21 16 24 24 C 1.38815 * 119.99820 * 194.68515 * 22 21 16 25 25 N 1.31619 * 120.00482 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99755 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47358 * 89.99886 * 26 24 22 28 28 H 1.48503 * 109.46945 * 209.99344 * 26 24 22 29 29 H 1.48497 * 109.47433 * 329.99444 * 26 24 22 30 30 H 1.08996 * 109.47393 * 60.00007 * 1 2 3 31 31 H 1.08998 * 109.47150 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47138 * 300.00049 * 1 2 3 33 33 H 1.09003 * 109.46921 * 239.99554 * 2 1 3 34 34 H 1.09000 * 109.46774 * 120.00332 * 2 1 3 35 35 H 1.07998 * 119.40474 * 179.67938 * 6 5 4 36 36 H 1.08004 * 120.27210 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.83026 * 179.97438 * 8 7 6 38 38 H 0.96998 * 120.00251 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.46704 * 60.00456 * 13 12 10 40 40 H 1.08991 * 109.47259 * 300.00065 * 13 12 10 41 41 H 1.08996 * 109.47046 * 60.00171 * 14 13 12 42 42 H 1.09001 * 109.47140 * 300.00302 * 14 13 12 43 43 H 1.09003 * 109.46886 * 54.93221 * 15 14 13 44 44 H 1.08996 * 109.46795 * 294.93480 * 15 14 13 45 45 H 1.08995 * 110.72025 * 23.31644 * 18 16 15 46 46 H 1.09007 * 110.71831 * 260.04719 * 18 16 15 47 47 H 1.09007 * 111.00405 * 206.42347 * 19 18 16 48 48 H 1.08997 * 111.01050 * 82.57372 * 19 18 16 49 49 H 1.09003 * 110.36843 * 155.85490 * 20 19 18 50 50 H 1.09001 * 110.36413 * 278.06156 * 20 19 18 51 51 H 0.96995 * 120.00670 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0073 6 6 5.4635 0.6002 -0.0019 7 6 6.0625 1.8473 0.0040 8 6 5.2713 2.9821 0.0047 9 6 3.8805 2.8228 -0.0011 10 6 2.9901 3.9990 -0.0011 11 8 1.7835 3.8481 -0.0066 12 7 3.5138 5.2407 0.0050 13 6 2.6294 6.4087 0.0043 14 6 3.4716 7.6861 0.0126 15 6 2.5479 8.9059 0.0126 16 6 3.3850 10.1794 0.1482 17 1 4.0297 10.1075 1.0243 18 6 4.2419 10.3855 -1.1185 19 6 4.1922 11.9224 -1.3254 20 6 2.7501 12.2516 -0.8654 21 7 2.5013 11.3478 0.2724 22 6 1.5964 11.5608 1.2778 23 1 1.6464 10.9734 2.1827 24 6 0.6148 12.5317 1.1338 25 7 0.5540 13.2478 0.0312 26 14 -0.6201 12.8217 2.5051 27 1 -0.0913 13.8486 3.4385 28 1 -1.9026 13.2943 1.9245 29 1 -0.8481 11.5531 3.2425 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 6.0819 -0.2852 -0.0025 36 1 7.1390 1.9343 0.0079 37 1 5.7156 3.9665 0.0096 38 1 4.4763 5.3612 0.0090 39 1 1.9964 6.3856 0.8914 40 1 2.0045 6.3909 -0.8885 41 1 4.1049 7.7095 -0.8742 42 1 4.0962 7.7037 0.9057 43 1 1.8541 8.8362 0.8504 44 1 1.9875 8.9372 -0.9217 45 1 3.8017 9.8673 -1.9704 46 1 5.2659 10.0520 -0.9500 47 1 4.3360 12.1803 -2.3747 48 1 4.9271 12.4253 -0.6969 49 1 2.6819 13.2915 -0.5458 50 1 2.0413 12.0555 -1.6699 51 1 -0.1317 13.9265 -0.0692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317434362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:23 Heat of formation + Delta-G solvation = -48.260363 kcal Electronic energy + Delta-G solvation = -29801.151712 eV Core-core repulsion = 25700.212206 eV Total energy + Delta-G solvation = -4100.939506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95011 -40.27816 -39.42620 -39.04412 -36.67167 -34.75618 -34.13375 -33.18196 -33.00826 -31.26750 -31.05860 -29.42250 -26.70712 -26.12667 -25.43767 -24.45495 -23.30625 -22.70025 -21.85362 -21.76109 -20.71942 -19.67085 -18.76299 -18.50820 -18.01736 -17.41767 -16.98164 -16.72835 -16.61048 -16.06648 -15.98938 -15.73398 -15.54685 -15.31309 -14.91711 -14.81042 -14.36668 -14.08699 -13.89056 -13.68244 -13.56277 -13.54205 -13.35793 -13.32462 -13.10868 -12.99403 -12.74249 -12.63912 -12.49645 -12.23261 -12.00701 -11.81935 -11.77146 -11.66559 -11.53340 -11.29907 -11.22437 -11.12076 -11.04768 -10.64742 -10.61837 -10.16024 -9.54361 -8.76348 -7.85050 -5.20360 -0.35138 0.24191 1.43707 1.45329 1.53724 1.85044 1.98930 2.08118 2.49995 2.79974 3.24755 3.33620 3.68174 3.72707 3.76957 3.96270 3.98822 4.02127 4.02758 4.11503 4.18129 4.22550 4.27846 4.36756 4.37415 4.44953 4.51300 4.64248 4.77738 4.81193 4.84397 4.86841 4.87637 4.89882 5.01343 5.05949 5.08280 5.15237 5.15899 5.26062 5.34941 5.39901 5.45252 5.51633 5.54366 5.69446 5.72921 5.81569 6.22673 6.28820 6.51717 6.75035 7.13870 7.22248 7.83900 8.50878 9.26548 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.001977 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.647054 B =14160.656970 C =15634.310185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.303 6.303 4 C 0.346 3.654 5 N -0.563 5.563 6 C 0.162 3.838 7 C -0.205 4.205 8 C -0.001 4.001 9 C -0.237 4.237 10 C 0.555 3.445 11 O -0.570 6.570 12 N -0.709 5.709 13 C 0.127 3.873 14 C -0.106 4.106 15 C -0.113 4.113 16 C 0.152 3.848 17 H 0.038 0.962 18 C -0.111 4.111 19 C -0.137 4.137 20 C 0.174 3.826 21 N -0.619 5.619 22 C -0.229 4.229 23 H 0.076 0.924 24 C -0.067 4.067 25 N -0.950 5.950 26 Si 0.969 3.031 27 H -0.284 1.284 28 H -0.297 1.297 29 H -0.271 1.271 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.201 0.799 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.416 0.584 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.028 0.972 50 H -0.010 1.010 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.275 -27.640 -2.311 32.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.209 6.209 4 C 0.167 3.833 5 N -0.288 5.288 6 C 0.005 3.995 7 C -0.224 4.224 8 C -0.027 4.027 9 C -0.243 4.243 10 C 0.342 3.658 11 O -0.450 6.450 12 N -0.362 5.362 13 C 0.003 3.997 14 C -0.144 4.144 15 C -0.153 4.153 16 C 0.046 3.954 17 H 0.055 0.945 18 C -0.148 4.148 19 C -0.176 4.176 20 C 0.049 3.951 21 N -0.344 5.344 22 C -0.359 4.359 23 H 0.093 0.907 24 C -0.260 4.260 25 N -0.599 5.599 26 Si 0.798 3.202 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.196 1.196 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.218 0.782 36 H 0.205 0.795 37 H 0.195 0.805 38 H 0.254 0.746 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.047 0.953 50 H 0.008 0.992 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.598 -28.228 -2.269 32.331 hybrid contribution -0.931 1.325 0.652 1.745 sum 14.668 -26.903 -1.617 30.685 Atomic orbital electron populations 1.21818 0.92040 1.04052 1.02673 1.22834 0.95893 0.80262 1.02564 1.86509 1.16923 1.31580 1.85875 1.20129 0.84629 0.89480 0.89065 1.67550 1.08144 1.31864 1.21235 1.23473 0.88286 0.99949 0.87767 1.22419 1.03667 0.91610 1.04732 1.22092 0.89290 1.02419 0.88886 1.20063 0.95742 0.91036 1.17490 1.18266 0.87553 0.83709 0.76229 1.90822 1.16654 1.86590 1.50898 1.45704 1.11198 1.04366 1.74941 1.21260 0.93097 0.84423 1.00930 1.21634 0.97879 0.90607 1.04323 1.21823 0.98344 0.94901 1.00233 1.21236 0.91086 0.86332 0.96773 0.94473 1.22588 1.00242 0.95405 0.96593 1.22880 0.96654 0.97055 1.00975 1.21204 0.91887 0.93830 0.88210 1.44859 1.43820 1.19819 1.25862 1.19290 1.05208 1.16427 0.94981 0.90665 1.25669 1.00434 1.00286 0.99578 1.70146 1.36193 1.25953 1.27581 0.85207 0.78420 0.77987 0.78557 1.21140 1.22326 1.19649 0.92572 0.87541 0.92618 0.91177 0.91236 0.78233 0.79526 0.80474 0.74583 0.93492 0.93036 0.88828 0.89753 0.94654 0.94120 0.91132 0.88214 0.90145 0.91697 0.95303 0.99218 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.06 1.22 6.03 71.98 0.43 1.65 16 3 O -0.30 -8.71 8.22 -66.43 -0.55 -9.26 16 4 C 0.35 8.53 7.51 85.13 0.64 9.16 16 5 N -0.56 -10.69 9.21 -308.00 -2.84 -13.53 16 6 C 0.16 1.63 11.17 84.71 0.95 2.58 16 7 C -0.20 -1.37 10.09 22.32 0.23 -1.14 16 8 C 0.00 -0.01 9.64 22.72 0.22 0.21 16 9 C -0.24 -5.15 5.90 -19.91 -0.12 -5.27 16 10 C 0.55 15.38 7.77 86.69 0.67 16.05 16 11 O -0.57 -21.69 15.19 16.79 0.26 -21.43 16 12 N -0.71 -14.95 5.51 -466.28 -2.57 -17.52 16 13 C 0.13 3.32 5.67 86.38 0.49 3.81 16 14 C -0.11 -2.45 5.10 30.60 0.16 -2.29 16 15 C -0.11 -3.93 4.72 30.59 0.14 -3.78 16 16 C 0.15 5.76 3.16 45.34 0.14 5.90 16 17 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 18 C -0.11 -3.31 5.71 31.78 0.18 -3.12 16 19 C -0.14 -4.84 7.08 31.98 0.23 -4.61 16 20 C 0.17 8.64 5.41 86.86 0.47 9.11 16 21 N -0.62 -31.50 3.13 -668.27 -2.09 -33.59 16 22 C -0.23 -12.97 9.70 84.04 0.82 -12.15 16 23 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 24 C -0.07 -3.88 5.47 84.86 0.46 -3.42 16 25 N -0.95 -58.53 10.58 21.65 0.23 -58.30 16 26 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 27 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 28 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 29 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16 35 H 0.20 0.41 8.06 -2.91 -0.02 0.38 16 36 H 0.19 -0.30 8.06 -2.91 -0.02 -0.32 16 37 H 0.18 0.61 6.52 -2.91 -0.02 0.60 16 38 H 0.42 5.07 6.57 -92.71 -0.61 4.46 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.69 7.65 -2.39 -0.02 1.68 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 44 H 0.04 1.55 8.03 -2.39 -0.02 1.53 16 45 H 0.07 2.01 7.78 -2.39 -0.02 1.99 16 46 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 47 H 0.08 2.45 8.14 -2.38 -0.02 2.44 16 48 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.03 1.62 6.93 -2.39 -0.02 1.61 16 50 H -0.01 -0.56 8.06 -2.39 -0.02 -0.58 16 51 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -84.43 412.37 1.63 -82.80 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.31 Total: 10.86 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.85 Total: 10.79 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -7.27 Total: -122.93 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.29 Total: -30.69 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -84.43 1.63 -82.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317434362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.541 kcal (2) G-P(sol) polarization free energy of solvation -84.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds