Wall clock time and date at job start Wed Apr 1 2020 05:17:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42892 * 109.46882 * 2 1
4 4 C 1.35429 * 116.99911 * 180.02562 * 3 2 1
5 5 N 1.32237 * 119.79941 * 0.31049 * 4 3 2
6 6 C 1.31885 * 121.80071 * 180.31461 * 5 4 3
7 7 C 1.38349 * 121.18253 * 359.65454 * 6 5 4
8 8 C 1.38334 * 119.46229 * 0.02569 * 7 6 5
9 9 C 1.39991 * 118.34782 * 359.97438 * 8 7 6
10 10 C 1.47521 * 120.59376 * 180.02562 * 9 8 7
11 11 O 1.21598 * 119.99852 * 179.97438 * 10 9 8
12 12 N 1.34770 * 120.00454 * 359.97438 * 10 9 8
13 13 C 1.46504 * 119.99978 * 179.97438 * 12 10 9
14 14 C 1.53005 * 109.46979 * 179.97438 * 13 12 10
15 15 C 1.53002 * 109.47040 * 180.02562 * 14 13 12
16 16 C 1.52999 * 109.46895 * 174.93436 * 15 14 13
17 17 H 1.09007 * 109.87324 * 306.13617 * 16 15 14
18 18 C 1.54321 * 110.01252 * 67.23881 * 16 15 14
19 19 C 1.55149 * 102.94179 * 141.68277 * 18 16 15
20 20 C 1.54908 * 101.58153 * 324.49640 * 19 18 16
21 21 N 1.47023 * 109.87930 * 185.12435 * 16 15 14
22 22 C 1.36931 * 125.65028 * 61.45423 * 21 16 15
23 23 H 1.08002 * 120.00168 * 14.67814 * 22 21 16
24 24 C 1.38815 * 119.99820 * 194.68515 * 22 21 16
25 25 N 1.31619 * 120.00482 * 359.97438 * 24 22 21
26 26 Si 1.86800 * 119.99755 * 179.97438 * 24 22 21
27 27 H 1.48499 * 109.47358 * 89.99886 * 26 24 22
28 28 H 1.48503 * 109.46945 * 209.99344 * 26 24 22
29 29 H 1.48497 * 109.47433 * 329.99444 * 26 24 22
30 30 H 1.08996 * 109.47393 * 60.00007 * 1 2 3
31 31 H 1.08998 * 109.47150 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.47138 * 300.00049 * 1 2 3
33 33 H 1.09003 * 109.46921 * 239.99554 * 2 1 3
34 34 H 1.09000 * 109.46774 * 120.00332 * 2 1 3
35 35 H 1.07998 * 119.40474 * 179.67938 * 6 5 4
36 36 H 1.08004 * 120.27210 * 180.02562 * 7 6 5
37 37 H 1.08001 * 120.83026 * 179.97438 * 8 7 6
38 38 H 0.96998 * 120.00251 * 0.02562 * 12 10 9
39 39 H 1.08998 * 109.46704 * 60.00456 * 13 12 10
40 40 H 1.08991 * 109.47259 * 300.00065 * 13 12 10
41 41 H 1.08996 * 109.47046 * 60.00171 * 14 13 12
42 42 H 1.09001 * 109.47140 * 300.00302 * 14 13 12
43 43 H 1.09003 * 109.46886 * 54.93221 * 15 14 13
44 44 H 1.08996 * 109.46795 * 294.93480 * 15 14 13
45 45 H 1.08995 * 110.72025 * 23.31644 * 18 16 15
46 46 H 1.09007 * 110.71831 * 260.04719 * 18 16 15
47 47 H 1.09007 * 111.00405 * 206.42347 * 19 18 16
48 48 H 1.08997 * 111.01050 * 82.57372 * 19 18 16
49 49 H 1.09003 * 110.36843 * 155.85490 * 20 19 18
50 50 H 1.09001 * 110.36413 * 278.06156 * 20 19 18
51 51 H 0.96995 * 120.00670 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.3489 1.5247 -0.0005
5 7 4.1508 0.4732 -0.0073
6 6 5.4635 0.6002 -0.0019
7 6 6.0625 1.8473 0.0040
8 6 5.2713 2.9821 0.0047
9 6 3.8805 2.8228 -0.0011
10 6 2.9901 3.9990 -0.0011
11 8 1.7835 3.8481 -0.0066
12 7 3.5138 5.2407 0.0050
13 6 2.6294 6.4087 0.0043
14 6 3.4716 7.6861 0.0126
15 6 2.5479 8.9059 0.0126
16 6 3.3850 10.1794 0.1482
17 1 4.0297 10.1075 1.0243
18 6 4.2419 10.3855 -1.1185
19 6 4.1922 11.9224 -1.3254
20 6 2.7501 12.2516 -0.8654
21 7 2.5013 11.3478 0.2724
22 6 1.5964 11.5608 1.2778
23 1 1.6464 10.9734 2.1827
24 6 0.6148 12.5317 1.1338
25 7 0.5540 13.2478 0.0312
26 14 -0.6201 12.8217 2.5051
27 1 -0.0913 13.8486 3.4385
28 1 -1.9026 13.2943 1.9245
29 1 -0.8481 11.5531 3.2425
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8934 -0.5139 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 6.0819 -0.2852 -0.0025
36 1 7.1390 1.9343 0.0079
37 1 5.7156 3.9665 0.0096
38 1 4.4763 5.3612 0.0090
39 1 1.9964 6.3856 0.8914
40 1 2.0045 6.3909 -0.8885
41 1 4.1049 7.7095 -0.8742
42 1 4.0962 7.7037 0.9057
43 1 1.8541 8.8362 0.8504
44 1 1.9875 8.9372 -0.9217
45 1 3.8017 9.8673 -1.9704
46 1 5.2659 10.0520 -0.9500
47 1 4.3360 12.1803 -2.3747
48 1 4.9271 12.4253 -0.6969
49 1 2.6819 13.2915 -0.5458
50 1 2.0413 12.0555 -1.6699
51 1 -0.1317 13.9265 -0.0692
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001317434362.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:17:23
Heat of formation + Delta-G solvation = -48.260363 kcal
Electronic energy + Delta-G solvation = -29801.151712 eV
Core-core repulsion = 25700.212206 eV
Total energy + Delta-G solvation = -4100.939506 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.95011 -40.27816 -39.42620 -39.04412 -36.67167 -34.75618 -34.13375 -33.18196
-33.00826 -31.26750 -31.05860 -29.42250 -26.70712 -26.12667 -25.43767 -24.45495
-23.30625 -22.70025 -21.85362 -21.76109 -20.71942 -19.67085 -18.76299 -18.50820
-18.01736 -17.41767 -16.98164 -16.72835 -16.61048 -16.06648 -15.98938 -15.73398
-15.54685 -15.31309 -14.91711 -14.81042 -14.36668 -14.08699 -13.89056 -13.68244
-13.56277 -13.54205 -13.35793 -13.32462 -13.10868 -12.99403 -12.74249 -12.63912
-12.49645 -12.23261 -12.00701 -11.81935 -11.77146 -11.66559 -11.53340 -11.29907
-11.22437 -11.12076 -11.04768 -10.64742 -10.61837 -10.16024 -9.54361 -8.76348
-7.85050 -5.20360 -0.35138 0.24191 1.43707 1.45329 1.53724 1.85044
1.98930 2.08118 2.49995 2.79974 3.24755 3.33620 3.68174 3.72707
3.76957 3.96270 3.98822 4.02127 4.02758 4.11503 4.18129 4.22550
4.27846 4.36756 4.37415 4.44953 4.51300 4.64248 4.77738 4.81193
4.84397 4.86841 4.87637 4.89882 5.01343 5.05949 5.08280 5.15237
5.15899 5.26062 5.34941 5.39901 5.45252 5.51633 5.54366 5.69446
5.72921 5.81569 6.22673 6.28820 6.51717 6.75035 7.13870 7.22248
7.83900 8.50878 9.26548
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013799 B = 0.001977 C = 0.001791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2028.647054 B =14160.656970 C =15634.310185
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.059 3.941
3 O -0.303 6.303
4 C 0.346 3.654
5 N -0.563 5.563
6 C 0.162 3.838
7 C -0.205 4.205
8 C -0.001 4.001
9 C -0.237 4.237
10 C 0.555 3.445
11 O -0.570 6.570
12 N -0.709 5.709
13 C 0.127 3.873
14 C -0.106 4.106
15 C -0.113 4.113
16 C 0.152 3.848
17 H 0.038 0.962
18 C -0.111 4.111
19 C -0.137 4.137
20 C 0.174 3.826
21 N -0.619 5.619
22 C -0.229 4.229
23 H 0.076 0.924
24 C -0.067 4.067
25 N -0.950 5.950
26 Si 0.969 3.031
27 H -0.284 1.284
28 H -0.297 1.297
29 H -0.271 1.271
30 H 0.055 0.945
31 H 0.106 0.894
32 H 0.055 0.945
33 H 0.070 0.930
34 H 0.069 0.931
35 H 0.201 0.799
36 H 0.187 0.813
37 H 0.178 0.822
38 H 0.416 0.584
39 H 0.047 0.953
40 H 0.051 0.949
41 H 0.093 0.907
42 H 0.084 0.916
43 H 0.035 0.965
44 H 0.040 0.960
45 H 0.070 0.930
46 H 0.099 0.901
47 H 0.080 0.920
48 H 0.064 0.936
49 H 0.028 0.972
50 H -0.010 1.010
51 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.275 -27.640 -2.311 32.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.016 4.016
3 O -0.209 6.209
4 C 0.167 3.833
5 N -0.288 5.288
6 C 0.005 3.995
7 C -0.224 4.224
8 C -0.027 4.027
9 C -0.243 4.243
10 C 0.342 3.658
11 O -0.450 6.450
12 N -0.362 5.362
13 C 0.003 3.997
14 C -0.144 4.144
15 C -0.153 4.153
16 C 0.046 3.954
17 H 0.055 0.945
18 C -0.148 4.148
19 C -0.176 4.176
20 C 0.049 3.951
21 N -0.344 5.344
22 C -0.359 4.359
23 H 0.093 0.907
24 C -0.260 4.260
25 N -0.599 5.599
26 Si 0.798 3.202
27 H -0.211 1.211
28 H -0.223 1.223
29 H -0.196 1.196
30 H 0.074 0.926
31 H 0.125 0.875
32 H 0.074 0.926
33 H 0.088 0.912
34 H 0.088 0.912
35 H 0.218 0.782
36 H 0.205 0.795
37 H 0.195 0.805
38 H 0.254 0.746
39 H 0.065 0.935
40 H 0.070 0.930
41 H 0.112 0.888
42 H 0.102 0.898
43 H 0.053 0.947
44 H 0.059 0.941
45 H 0.089 0.911
46 H 0.118 0.882
47 H 0.099 0.901
48 H 0.083 0.917
49 H 0.047 0.953
50 H 0.008 0.992
51 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 15.598 -28.228 -2.269 32.331
hybrid contribution -0.931 1.325 0.652 1.745
sum 14.668 -26.903 -1.617 30.685
Atomic orbital electron populations
1.21818 0.92040 1.04052 1.02673 1.22834 0.95893 0.80262 1.02564
1.86509 1.16923 1.31580 1.85875 1.20129 0.84629 0.89480 0.89065
1.67550 1.08144 1.31864 1.21235 1.23473 0.88286 0.99949 0.87767
1.22419 1.03667 0.91610 1.04732 1.22092 0.89290 1.02419 0.88886
1.20063 0.95742 0.91036 1.17490 1.18266 0.87553 0.83709 0.76229
1.90822 1.16654 1.86590 1.50898 1.45704 1.11198 1.04366 1.74941
1.21260 0.93097 0.84423 1.00930 1.21634 0.97879 0.90607 1.04323
1.21823 0.98344 0.94901 1.00233 1.21236 0.91086 0.86332 0.96773
0.94473 1.22588 1.00242 0.95405 0.96593 1.22880 0.96654 0.97055
1.00975 1.21204 0.91887 0.93830 0.88210 1.44859 1.43820 1.19819
1.25862 1.19290 1.05208 1.16427 0.94981 0.90665 1.25669 1.00434
1.00286 0.99578 1.70146 1.36193 1.25953 1.27581 0.85207 0.78420
0.77987 0.78557 1.21140 1.22326 1.19649 0.92572 0.87541 0.92618
0.91177 0.91236 0.78233 0.79526 0.80474 0.74583 0.93492 0.93036
0.88828 0.89753 0.94654 0.94120 0.91132 0.88214 0.90145 0.91697
0.95303 0.99218 0.94546
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16
2 C 0.06 1.22 6.03 71.98 0.43 1.65 16
3 O -0.30 -8.71 8.22 -66.43 -0.55 -9.26 16
4 C 0.35 8.53 7.51 85.13 0.64 9.16 16
5 N -0.56 -10.69 9.21 -308.00 -2.84 -13.53 16
6 C 0.16 1.63 11.17 84.71 0.95 2.58 16
7 C -0.20 -1.37 10.09 22.32 0.23 -1.14 16
8 C 0.00 -0.01 9.64 22.72 0.22 0.21 16
9 C -0.24 -5.15 5.90 -19.91 -0.12 -5.27 16
10 C 0.55 15.38 7.77 86.69 0.67 16.05 16
11 O -0.57 -21.69 15.19 16.79 0.26 -21.43 16
12 N -0.71 -14.95 5.51 -466.28 -2.57 -17.52 16
13 C 0.13 3.32 5.67 86.38 0.49 3.81 16
14 C -0.11 -2.45 5.10 30.60 0.16 -2.29 16
15 C -0.11 -3.93 4.72 30.59 0.14 -3.78 16
16 C 0.15 5.76 3.16 45.34 0.14 5.90 16
17 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16
18 C -0.11 -3.31 5.71 31.78 0.18 -3.12 16
19 C -0.14 -4.84 7.08 31.98 0.23 -4.61 16
20 C 0.17 8.64 5.41 86.86 0.47 9.11 16
21 N -0.62 -31.50 3.13 -668.27 -2.09 -33.59 16
22 C -0.23 -12.97 9.70 84.04 0.82 -12.15 16
23 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16
24 C -0.07 -3.88 5.47 84.86 0.46 -3.42 16
25 N -0.95 -58.53 10.58 21.65 0.23 -58.30 16
26 Si 0.97 47.14 29.55 68.60 2.03 49.17 16
27 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16
28 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16
29 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16
30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16
33 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16
34 H 0.07 1.30 8.11 -2.39 -0.02 1.28 16
35 H 0.20 0.41 8.06 -2.91 -0.02 0.38 16
36 H 0.19 -0.30 8.06 -2.91 -0.02 -0.32 16
37 H 0.18 0.61 6.52 -2.91 -0.02 0.60 16
38 H 0.42 5.07 6.57 -92.71 -0.61 4.46 16
39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
41 H 0.09 1.69 7.65 -2.39 -0.02 1.68 16
42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
43 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16
44 H 0.04 1.55 8.03 -2.39 -0.02 1.53 16
45 H 0.07 2.01 7.78 -2.39 -0.02 1.99 16
46 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16
47 H 0.08 2.45 8.14 -2.38 -0.02 2.44 16
48 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
49 H 0.03 1.62 6.93 -2.39 -0.02 1.61 16
50 H -0.01 -0.56 8.06 -2.39 -0.02 -0.58 16
51 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
Total: -1.00 -84.43 412.37 1.63 -82.80
By element:
Atomic # 1 Polarization: 10.55 SS G_CDS: 0.31 Total: 10.86 kcal
Atomic # 6 Polarization: 3.94 SS G_CDS: 6.85 Total: 10.79 kcal
Atomic # 7 Polarization: -115.67 SS G_CDS: -7.27 Total: -122.93 kcal
Atomic # 8 Polarization: -30.40 SS G_CDS: -0.29 Total: -30.69 kcal
Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal
Total: -84.43 1.63 -82.80 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317434362.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.541 kcal
(2) G-P(sol) polarization free energy of solvation -84.431 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.890 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds