Wall clock time and date at job start Wed Apr 1 2020 04:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42890 * 109.47444 * 2 1 4 4 C 1.35679 * 117.00106 * 179.97438 * 3 2 1 5 5 C 1.38923 * 119.68487 * 180.02562 * 4 3 2 6 6 C 1.38375 * 119.10815 * 179.97438 * 5 4 3 7 7 C 1.38822 * 118.48831 * 359.73280 * 6 5 4 8 8 C 1.38043 * 119.28908 * 0.52365 * 7 6 5 9 9 C 1.50699 * 119.58330 * 179.73273 * 8 7 6 10 10 C 1.50709 * 109.47081 * 124.73497 * 9 8 7 11 11 O 1.21279 * 119.99860 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00093 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47070 * 184.52405 * 13 12 10 15 15 N 1.46501 * 110.53950 * 301.86790 * 14 13 12 16 16 C 1.36931 * 119.99924 * 301.04148 * 15 14 13 17 17 H 1.08001 * 120.00200 * 354.68997 * 16 15 14 18 18 C 1.38814 * 119.99751 * 174.69293 * 16 15 14 19 19 N 1.31615 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47299 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46789 * 119.99760 * 20 18 16 23 23 H 1.48501 * 109.47324 * 239.99913 * 20 18 16 24 24 C 1.54889 * 110.48669 * 64.48257 * 14 13 12 25 25 C 1.54887 * 102.75114 * 156.61985 * 24 14 13 26 26 C 1.54272 * 104.19493 * 322.05917 * 25 24 14 27 27 C 1.53874 * 106.59867 * 23.60605 * 26 25 24 28 28 N 1.31968 * 120.83589 * 359.47024 * 8 7 6 29 29 H 1.09000 * 109.47572 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47358 * 300.00307 * 1 2 3 31 31 H 1.08999 * 109.46970 * 59.99903 * 1 2 3 32 32 H 1.08999 * 109.46858 * 239.99574 * 2 1 3 33 33 H 1.08999 * 109.46970 * 120.00097 * 2 1 3 34 34 H 1.08000 * 120.44053 * 359.95231 * 5 4 3 35 35 H 1.08009 * 120.75245 * 180.02562 * 6 5 4 36 36 H 1.08005 * 120.35596 * 180.26805 * 7 6 5 37 37 H 1.08995 * 109.47613 * 4.73555 * 9 8 7 38 38 H 1.09004 * 109.47420 * 244.73198 * 9 8 7 39 39 H 0.97001 * 119.99943 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.47286 * 64.51903 * 13 12 10 41 41 H 1.09000 * 109.47211 * 304.52323 * 13 12 10 42 42 H 0.96997 * 119.99547 * 121.03406 * 15 14 13 43 43 H 0.97000 * 119.99873 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.75829 * 274.93645 * 24 14 13 45 45 H 1.09001 * 110.75662 * 38.30851 * 24 14 13 46 46 H 1.09001 * 110.48500 * 80.73417 * 25 24 14 47 47 H 1.08996 * 110.48998 * 203.37635 * 25 24 14 48 48 H 1.09001 * 110.02908 * 264.32585 * 26 25 24 49 49 H 1.09000 * 110.03354 * 142.89481 * 26 25 24 50 50 H 1.08998 * 110.03322 * 240.71575 * 27 26 25 51 51 H 1.09003 * 110.02982 * 119.28344 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5249 0.0005 5 6 3.8754 2.8115 0.0011 6 6 5.2490 2.9789 0.0022 7 6 6.0539 1.8479 0.0084 8 6 5.4647 0.5996 0.0022 9 6 6.3322 -0.6326 0.0027 10 6 5.9540 -1.5127 1.1663 11 8 5.0671 -1.1729 1.9204 12 7 6.6015 -2.6773 1.3687 13 6 6.2342 -3.5325 2.5000 14 6 7.1883 -4.7267 2.5674 15 7 7.1480 -5.4880 1.3164 16 6 5.9677 -6.0297 0.8823 17 1 5.0856 -5.9698 1.5026 18 6 5.9049 -6.6558 -0.3550 19 7 6.9797 -6.7284 -1.1111 20 14 4.2949 -7.3953 -0.9469 21 1 3.2445 -7.1816 0.0808 22 1 3.8861 -6.7402 -2.2154 23 1 4.4739 -8.8514 -1.1770 24 6 8.6318 -4.2511 2.8664 25 6 9.2855 -5.5113 3.4856 26 6 8.1671 -6.1331 4.3472 27 6 6.8337 -5.6342 3.7635 28 7 4.1512 0.4716 0.0010 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2195 3.6695 0.0003 35 1 5.6849 3.9672 0.0031 36 1 7.1297 1.9436 0.0137 37 1 7.3783 -0.3405 0.0932 38 1 6.1869 -1.1797 -0.9288 39 1 7.3111 -2.9489 0.7657 40 1 5.2130 -3.8902 2.3686 41 1 6.3025 -2.9602 3.4252 42 1 7.9575 -5.6083 0.7957 43 1 6.9359 -7.1662 -1.9755 44 1 9.1419 -3.9634 1.9470 45 1 8.6271 -3.4278 3.5807 46 1 9.5943 -6.2045 2.7031 47 1 10.1363 -5.2332 4.1076 48 1 8.2674 -5.8058 5.3821 49 1 8.2149 -7.2207 4.2929 50 1 6.2868 -5.0648 4.5150 51 1 6.2343 -6.4797 3.4258 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319363680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:37 Heat of formation + Delta-G solvation = -40.678906 kcal Electronic energy + Delta-G solvation = -31116.056535 eV Core-core repulsion = 27015.445785 eV Total energy + Delta-G solvation = -4100.610750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.69824 -39.31131 -38.29256 -37.71602 -34.01360 -33.24317 -33.05518 -32.20563 -31.12186 -30.49394 -28.56091 -28.28236 -27.34712 -24.45814 -23.86542 -23.33662 -22.59535 -22.00266 -20.31993 -19.60360 -18.66190 -18.22652 -17.18820 -16.80562 -16.41405 -16.09646 -16.01619 -15.77118 -15.06357 -14.90392 -14.51729 -14.15509 -14.03797 -13.98328 -13.80636 -13.47685 -13.25503 -13.01848 -12.79807 -12.58083 -12.54999 -12.42685 -12.09685 -11.98613 -11.56849 -11.46264 -11.38401 -11.09570 -10.83021 -10.78661 -10.67048 -10.60924 -10.53329 -10.33358 -9.96867 -9.84132 -9.78927 -9.66134 -9.53980 -9.32604 -8.92429 -8.42213 -8.34415 -7.02450 -5.82298 -3.10897 1.12283 1.32358 3.06378 3.15702 3.40408 3.48330 3.48860 3.59632 3.96332 4.14857 4.55415 4.68077 4.96614 5.04091 5.05402 5.07205 5.12005 5.13753 5.17561 5.23421 5.31950 5.40443 5.44725 5.49511 5.54943 5.66589 5.73502 5.76708 5.80670 5.85428 5.89227 5.93878 6.02723 6.03564 6.11385 6.13768 6.20504 6.26775 6.34847 6.42508 6.47238 6.57725 6.67956 6.75515 6.82921 7.02540 7.14576 7.30952 7.70271 7.98302 8.13319 8.36484 8.79059 9.48732 10.02502 10.38347 11.39851 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009287 B = 0.003241 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.258904 B = 8638.500143 C =10246.619048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.311 6.311 4 C 0.327 3.673 5 C -0.200 4.200 6 C -0.043 4.043 7 C -0.210 4.210 8 C 0.194 3.806 9 C -0.098 4.098 10 C 0.516 3.484 11 O -0.541 6.541 12 N -0.703 5.703 13 C 0.124 3.876 14 C 0.189 3.811 15 N -0.709 5.709 16 C -0.230 4.230 17 H 0.070 0.930 18 C -0.008 4.008 19 N -0.931 5.931 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.133 4.133 28 N -0.508 5.508 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.403 0.597 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 15.967 3.702 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.219 6.219 4 C 0.147 3.853 5 C -0.221 4.221 6 C -0.068 4.068 7 C -0.230 4.230 8 C 0.056 3.944 9 C -0.138 4.138 10 C 0.300 3.700 11 O -0.418 6.418 12 N -0.353 5.353 13 C -0.002 4.002 14 C 0.097 3.903 15 N -0.350 5.350 16 C -0.362 4.362 17 H 0.088 0.912 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.731 3.269 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.161 4.161 25 C -0.156 4.156 26 C -0.152 4.152 27 C -0.173 4.173 28 N -0.231 5.231 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.238 0.762 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.106 15.479 4.210 16.079 hybrid contribution 0.031 -0.184 -0.928 0.947 sum -1.074 15.295 3.282 15.680 Atomic orbital electron populations 1.21810 0.93248 1.02920 1.02848 1.22617 0.94384 0.80779 1.03219 1.86176 1.16925 1.31027 1.87729 1.19760 0.84135 0.89715 0.91645 1.21007 0.95886 0.95648 1.09557 1.21291 0.92306 0.99149 0.94102 1.21739 1.01251 0.92522 1.07500 1.20238 0.88662 0.93522 0.91992 1.20679 0.99293 0.93524 1.00308 1.20038 0.82230 0.81891 0.85809 1.90680 1.30469 1.73436 1.47239 1.45718 1.38786 1.19890 1.30930 1.21758 1.00160 0.91103 0.87225 1.20621 0.91720 0.89651 0.88343 1.42379 1.09539 1.61446 1.21666 1.19122 0.89085 1.28642 0.99307 0.91238 1.24661 0.96932 1.01839 0.96979 1.69652 1.27130 1.49092 1.12076 0.86223 0.83481 0.78596 0.78558 1.20593 1.21959 1.21987 1.22685 0.96049 0.97214 1.00123 1.22267 0.97029 0.97322 0.98948 1.21990 0.95249 1.00041 0.97887 1.22614 0.96968 1.00571 0.97189 1.67094 1.05878 1.32932 1.17200 0.90265 0.91825 0.91942 0.91638 0.90950 0.84485 0.84293 0.84606 0.87370 0.86767 0.76231 0.91923 0.92960 0.78110 0.93649 0.91686 0.91685 0.91338 0.92847 0.93105 0.92443 0.93145 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 2 C 0.07 0.91 6.03 37.16 0.22 1.14 16 3 O -0.31 -4.62 10.12 -18.74 -0.19 -4.81 16 4 C 0.33 4.98 7.49 -17.12 -0.13 4.85 16 5 C -0.20 -2.42 10.04 -39.28 -0.39 -2.81 16 6 C -0.04 -0.44 10.17 -39.31 -0.40 -0.84 16 7 C -0.21 -2.37 9.70 -39.44 -0.38 -2.76 16 8 C 0.19 2.80 5.76 -82.61 -0.48 2.32 16 9 C -0.10 -1.31 6.10 -29.03 -0.18 -1.48 16 10 C 0.52 8.95 7.76 -10.98 -0.09 8.87 16 11 O -0.54 -11.33 15.33 5.56 0.09 -11.25 16 12 N -0.70 -12.01 5.24 -60.30 -0.32 -12.33 16 13 C 0.12 2.27 4.28 -4.04 -0.02 2.25 16 14 C 0.19 3.37 0.52 -130.16 -0.07 3.30 16 15 N -0.71 -15.59 4.73 -45.70 -0.22 -15.80 16 16 C -0.23 -5.88 8.43 -15.06 -0.13 -6.00 16 17 H 0.07 1.80 7.29 -52.49 -0.38 1.42 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -26.32 13.06 55.49 0.72 -25.59 16 20 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C -0.12 -1.83 5.49 -24.74 -0.14 -1.97 16 25 C -0.12 -1.71 6.79 -25.07 -0.17 -1.88 16 26 C -0.11 -1.70 6.80 -25.61 -0.17 -1.88 16 27 C -0.13 -2.29 6.00 -25.61 -0.15 -2.44 16 28 N -0.51 -8.49 8.08 -9.55 -0.08 -8.57 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.14 1.12 7.94 -52.48 -0.42 0.70 16 37 H 0.11 1.04 7.86 -51.93 -0.41 0.63 16 38 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.40 6.57 8.07 -40.82 -0.33 6.24 16 40 H 0.06 1.34 7.49 -51.93 -0.39 0.95 16 41 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 42 H 0.38 9.05 7.70 -40.82 -0.31 8.73 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 45 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.05 0.80 7.84 -51.93 -0.41 0.39 16 51 H 0.08 1.51 7.17 -51.93 -0.37 1.14 16 LS Contribution 415.99 15.07 6.27 6.27 Total: -1.00 -31.92 415.99 -9.61 -41.53 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -8.48 Total: 14.46 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.38 Total: -0.86 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.12 Total: -62.29 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.10 Total: -16.06 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.92 -9.61 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319363680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.850 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds