Wall clock time and date at job start Wed Apr 1 2020 04:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42890 * 109.47444 * 2 1 4 4 C 1.35679 * 117.00106 * 179.97438 * 3 2 1 5 5 C 1.38923 * 119.68487 * 180.02562 * 4 3 2 6 6 C 1.38375 * 119.10815 * 179.97438 * 5 4 3 7 7 C 1.38822 * 118.48831 * 359.73280 * 6 5 4 8 8 C 1.38043 * 119.28908 * 0.52365 * 7 6 5 9 9 C 1.50699 * 119.58330 * 179.73273 * 8 7 6 10 10 C 1.50709 * 109.47081 * 124.73497 * 9 8 7 11 11 O 1.21279 * 119.99860 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00093 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47070 * 184.52405 * 13 12 10 15 15 N 1.46501 * 110.53950 * 301.86790 * 14 13 12 16 16 C 1.36931 * 119.99924 * 301.04148 * 15 14 13 17 17 H 1.08001 * 120.00200 * 354.68997 * 16 15 14 18 18 C 1.38814 * 119.99751 * 174.69293 * 16 15 14 19 19 N 1.31615 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47299 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46789 * 119.99760 * 20 18 16 23 23 H 1.48501 * 109.47324 * 239.99913 * 20 18 16 24 24 C 1.54889 * 110.48669 * 64.48257 * 14 13 12 25 25 C 1.54887 * 102.75114 * 156.61985 * 24 14 13 26 26 C 1.54272 * 104.19493 * 322.05917 * 25 24 14 27 27 C 1.53874 * 106.59867 * 23.60605 * 26 25 24 28 28 N 1.31968 * 120.83589 * 359.47024 * 8 7 6 29 29 H 1.09000 * 109.47572 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47358 * 300.00307 * 1 2 3 31 31 H 1.08999 * 109.46970 * 59.99903 * 1 2 3 32 32 H 1.08999 * 109.46858 * 239.99574 * 2 1 3 33 33 H 1.08999 * 109.46970 * 120.00097 * 2 1 3 34 34 H 1.08000 * 120.44053 * 359.95231 * 5 4 3 35 35 H 1.08009 * 120.75245 * 180.02562 * 6 5 4 36 36 H 1.08005 * 120.35596 * 180.26805 * 7 6 5 37 37 H 1.08995 * 109.47613 * 4.73555 * 9 8 7 38 38 H 1.09004 * 109.47420 * 244.73198 * 9 8 7 39 39 H 0.97001 * 119.99943 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.47286 * 64.51903 * 13 12 10 41 41 H 1.09000 * 109.47211 * 304.52323 * 13 12 10 42 42 H 0.96997 * 119.99547 * 121.03406 * 15 14 13 43 43 H 0.97000 * 119.99873 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.75829 * 274.93645 * 24 14 13 45 45 H 1.09001 * 110.75662 * 38.30851 * 24 14 13 46 46 H 1.09001 * 110.48500 * 80.73417 * 25 24 14 47 47 H 1.08996 * 110.48998 * 203.37635 * 25 24 14 48 48 H 1.09001 * 110.02908 * 264.32585 * 26 25 24 49 49 H 1.09000 * 110.03354 * 142.89481 * 26 25 24 50 50 H 1.08998 * 110.03322 * 240.71575 * 27 26 25 51 51 H 1.09003 * 110.02982 * 119.28344 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5249 0.0005 5 6 3.8754 2.8115 0.0011 6 6 5.2490 2.9789 0.0022 7 6 6.0539 1.8479 0.0084 8 6 5.4647 0.5996 0.0022 9 6 6.3322 -0.6326 0.0027 10 6 5.9540 -1.5127 1.1663 11 8 5.0671 -1.1729 1.9204 12 7 6.6015 -2.6773 1.3687 13 6 6.2342 -3.5325 2.5000 14 6 7.1883 -4.7267 2.5674 15 7 7.1480 -5.4880 1.3164 16 6 5.9677 -6.0297 0.8823 17 1 5.0856 -5.9698 1.5026 18 6 5.9049 -6.6558 -0.3550 19 7 6.9797 -6.7284 -1.1111 20 14 4.2949 -7.3953 -0.9469 21 1 3.2445 -7.1816 0.0808 22 1 3.8861 -6.7402 -2.2154 23 1 4.4739 -8.8514 -1.1770 24 6 8.6318 -4.2511 2.8664 25 6 9.2855 -5.5113 3.4856 26 6 8.1671 -6.1331 4.3472 27 6 6.8337 -5.6342 3.7635 28 7 4.1512 0.4716 0.0010 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2195 3.6695 0.0003 35 1 5.6849 3.9672 0.0031 36 1 7.1297 1.9436 0.0137 37 1 7.3783 -0.3405 0.0932 38 1 6.1869 -1.1797 -0.9288 39 1 7.3111 -2.9489 0.7657 40 1 5.2130 -3.8902 2.3686 41 1 6.3025 -2.9602 3.4252 42 1 7.9575 -5.6083 0.7957 43 1 6.9359 -7.1662 -1.9755 44 1 9.1419 -3.9634 1.9470 45 1 8.6271 -3.4278 3.5807 46 1 9.5943 -6.2045 2.7031 47 1 10.1363 -5.2332 4.1076 48 1 8.2674 -5.8058 5.3821 49 1 8.2149 -7.2207 4.2929 50 1 6.2868 -5.0648 4.5150 51 1 6.2343 -6.4797 3.4258 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319363680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:36 Heat of formation + Delta-G solvation = -62.491102 kcal Electronic energy + Delta-G solvation = -31117.002383 eV Core-core repulsion = 27015.445785 eV Total energy + Delta-G solvation = -4101.556598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.72426 -40.69096 -39.59289 -38.88060 -35.49607 -35.05179 -34.07329 -33.16971 -32.44280 -31.96231 -29.93463 -29.57679 -28.60655 -26.02331 -25.14754 -24.73833 -23.66077 -23.02503 -21.60811 -20.93195 -20.15690 -19.29646 -19.01437 -18.13159 -17.54386 -17.25322 -17.23056 -16.86644 -16.51190 -16.25787 -16.00139 -15.69023 -15.28520 -15.10195 -15.00810 -14.89065 -14.67574 -14.14906 -14.01784 -13.89895 -13.66127 -13.45721 -13.27688 -13.13117 -12.95415 -12.90856 -12.74999 -12.49861 -12.47847 -12.30738 -12.24023 -11.88583 -11.81214 -11.74751 -11.57434 -11.31923 -11.22387 -10.94727 -10.83270 -10.74429 -10.45036 -9.85073 -9.40030 -8.94481 -7.91627 -5.16125 0.15780 0.41954 1.41264 1.45136 1.51109 1.79077 2.07404 2.37194 2.55753 2.89104 3.13991 3.40522 3.78627 3.79965 3.83306 3.93666 3.98334 4.04089 4.05434 4.15124 4.15505 4.21585 4.35961 4.38752 4.45397 4.51102 4.53073 4.63237 4.69946 4.77135 4.80352 4.82248 4.86548 4.89186 4.99884 5.03225 5.03724 5.14013 5.18348 5.23115 5.24591 5.25480 5.44170 5.46318 5.57576 5.60099 5.64174 5.73468 6.25949 6.32729 6.74704 6.99758 7.40495 7.42121 8.14203 8.39831 9.30827 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009287 B = 0.003241 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.258904 B = 8638.500143 C =10246.619048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 O -0.319 6.319 4 C 0.289 3.711 5 C -0.199 4.199 6 C -0.035 4.035 7 C -0.198 4.198 8 C 0.159 3.841 9 C -0.089 4.089 10 C 0.511 3.489 11 O -0.581 6.581 12 N -0.700 5.700 13 C 0.132 3.868 14 C 0.184 3.816 15 N -0.710 5.710 16 C -0.212 4.212 17 H 0.059 0.941 18 C -0.060 4.060 19 N -0.957 5.957 20 Si 0.945 3.055 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.294 1.294 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.111 4.111 27 C -0.134 4.134 28 N -0.549 5.549 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.159 0.841 35 H 0.185 0.815 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.112 0.888 39 H 0.408 0.592 40 H 0.022 0.978 41 H 0.063 0.937 42 H 0.378 0.622 43 H 0.248 0.752 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 18.480 4.518 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.006 4.006 3 O -0.227 6.227 4 C 0.110 3.890 5 C -0.220 4.220 6 C -0.060 4.060 7 C -0.217 4.217 8 C 0.022 3.978 9 C -0.129 4.129 10 C 0.297 3.703 11 O -0.462 6.462 12 N -0.350 5.350 13 C 0.006 3.994 14 C 0.093 3.907 15 N -0.350 5.350 16 C -0.345 4.345 17 H 0.077 0.923 18 C -0.253 4.253 19 N -0.609 5.609 20 Si 0.777 3.223 21 H -0.204 1.204 22 H -0.226 1.226 23 H -0.222 1.222 24 C -0.151 4.151 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.174 4.174 28 N -0.273 5.273 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.177 0.823 35 H 0.202 0.798 36 H 0.191 0.809 37 H 0.170 0.830 38 H 0.130 0.870 39 H 0.244 0.756 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.211 0.789 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.745 17.999 5.052 18.709 hybrid contribution -0.530 -0.891 -1.084 1.500 sum 0.216 17.108 3.968 17.564 Atomic orbital electron populations 1.21793 0.90481 1.03913 1.03755 1.22544 0.96490 0.80651 1.00916 1.86158 1.17488 1.30866 1.88203 1.20250 0.84081 0.90906 0.93761 1.21417 0.97388 0.94882 1.08266 1.21857 0.91295 1.00920 0.91942 1.22178 1.03273 0.91350 1.04943 1.20591 0.88197 0.95157 0.93845 1.20738 1.01612 0.92655 0.97922 1.20789 0.81255 0.81921 0.86310 1.90661 1.32117 1.74340 1.49034 1.45719 1.38845 1.19772 1.30659 1.21579 0.98037 0.91550 0.88266 1.20850 0.94069 0.89039 0.86721 1.42407 1.08021 1.61627 1.22978 1.19222 0.89845 1.26851 0.98555 0.92270 1.25145 0.98901 1.03578 0.97714 1.69743 1.28201 1.50719 1.12202 0.85485 0.81327 0.77739 0.77725 1.20437 1.22633 1.22171 1.22648 0.93299 0.98095 1.01021 1.22250 0.97760 0.96448 0.98705 1.21987 0.93798 0.99650 0.99379 1.22586 0.98249 0.99336 0.97269 1.66977 1.07429 1.34487 1.18401 0.89226 0.91177 0.90661 0.93117 0.94097 0.82324 0.79765 0.80857 0.82959 0.86955 0.75631 0.95928 0.91865 0.78878 0.94291 0.91193 0.89451 0.93257 0.89732 0.90363 0.93213 0.91789 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 10.28 71.98 0.74 -2.33 16 2 C 0.07 2.09 6.03 71.98 0.43 2.53 16 3 O -0.32 -9.88 10.12 -89.96 -0.91 -10.79 16 4 C 0.29 8.97 7.49 84.79 0.63 9.60 16 5 C -0.20 -4.47 10.04 22.47 0.23 -4.24 16 6 C -0.04 -0.59 10.17 22.44 0.23 -0.37 16 7 C -0.20 -3.82 9.70 22.36 0.22 -3.61 16 8 C 0.16 4.45 5.76 42.49 0.24 4.70 16 9 C -0.09 -2.29 6.10 29.10 0.18 -2.12 16 10 C 0.51 17.79 7.76 87.66 0.68 18.48 16 11 O -0.58 -25.12 15.33 -3.03 -0.05 -25.17 16 12 N -0.70 -23.84 5.24 -463.06 -2.43 -26.27 16 13 C 0.13 4.89 4.28 86.38 0.37 5.26 16 14 C 0.18 6.48 0.52 4.68 0.00 6.48 16 15 N -0.71 -31.59 4.73 -298.49 -1.41 -33.00 16 16 C -0.21 -11.10 8.43 84.03 0.71 -10.39 16 17 H 0.06 3.19 7.29 -2.91 -0.02 3.17 16 18 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 19 N -0.96 -55.14 13.06 21.65 0.28 -54.86 16 20 Si 0.95 46.39 29.55 68.60 2.03 48.41 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 24 C -0.11 -3.09 5.49 31.88 0.18 -2.91 16 25 C -0.11 -3.01 6.79 31.67 0.22 -2.79 16 26 C -0.11 -3.08 6.80 31.32 0.21 -2.87 16 27 C -0.13 -4.55 6.00 31.32 0.19 -4.36 16 28 N -0.55 -18.91 8.08 -296.99 -2.40 -21.31 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 33 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 34 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 36 H 0.17 1.95 7.94 -2.91 -0.02 1.93 16 37 H 0.15 2.43 7.86 -2.39 -0.02 2.41 16 38 H 0.11 2.90 8.14 -2.39 -0.02 2.89 16 39 H 0.41 13.06 8.07 -92.71 -0.75 12.31 16 40 H 0.02 1.00 7.49 -2.39 -0.02 0.98 16 41 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 42 H 0.38 17.91 7.70 -92.71 -0.71 17.20 16 43 H 0.25 14.11 8.31 -92.71 -0.77 13.33 16 44 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 45 H 0.09 2.06 8.05 -2.39 -0.02 2.04 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.06 1.97 7.84 -2.39 -0.02 1.95 16 51 H 0.04 1.77 7.17 -2.39 -0.02 1.75 16 Total: -1.00 -73.89 415.99 0.51 -73.38 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.53 Total: 41.42 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.92 Total: 8.18 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -5.96 Total: -135.44 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.96 Total: -35.96 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.89 0.51 -73.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319363680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.893 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds