Wall clock time and date at job start Wed Apr 1 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47470 * 10.77533 * 3 2 1 5 5 C 1.34785 * 120.00164 * 83.05811 * 4 3 2 6 6 O 1.21344 * 120.00107 * 174.73895 * 5 4 3 7 7 C 1.49449 * 119.99563 * 354.74146 * 5 4 3 8 8 O 1.21343 * 120.00244 * 358.92674 * 7 5 4 9 9 N 1.34778 * 119.99577 * 178.92051 * 7 5 4 10 10 C 1.46508 * 119.99745 * 175.29370 * 9 7 5 11 11 C 1.52995 * 109.46696 * 184.61030 * 10 9 7 12 12 C 1.50700 * 115.55103 * 303.92026 * 11 10 9 13 13 H 1.07999 * 119.99945 * 144.24306 * 12 11 10 14 14 C 1.37880 * 120.00114 * 324.24309 * 12 11 10 15 15 N 1.31515 * 119.99858 * 3.31555 * 14 12 11 16 16 Si 1.86797 * 119.99918 * 183.31023 * 14 12 11 17 17 H 1.48501 * 109.47192 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47093 * 120.00276 * 16 14 12 19 19 H 1.48503 * 109.47127 * 239.99986 * 16 14 12 20 20 C 1.53004 * 117.49547 * 158.25774 * 11 10 9 21 21 C 1.53004 * 117.50218 * 89.59930 * 11 10 9 22 22 C 1.46501 * 120.00179 * 263.06252 * 4 3 2 23 23 C 1.53123 * 109.52341 * 239.68228 * 22 4 3 24 24 C 1.53035 * 109.28085 * 182.43948 * 23 22 4 25 25 N 1.46848 * 109.52218 * 59.17757 * 24 23 22 26 26 C 1.46898 * 110.99793 * 174.16128 * 25 24 23 27 27 C 1.46844 * 111.19912 * 298.25917 * 25 24 23 28 28 C 1.53039 * 109.52439 * 61.74469 * 27 25 24 29 29 H 4.40642 * 5.51366 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.46655 * 250.77485 * 3 2 1 31 31 H 1.09006 * 109.46658 * 130.77838 * 3 2 1 32 32 H 0.97000 * 120.00349 * 355.02172 * 9 7 5 33 33 H 1.08996 * 109.46742 * 304.60416 * 10 9 7 34 34 H 1.08993 * 109.47376 * 64.60679 * 10 9 7 35 35 H 0.97001 * 119.99839 * 185.00653 * 15 14 12 36 36 H 1.08999 * 117.50134 * 359.97438 * 20 11 10 37 37 H 1.08997 * 117.50277 * 145.01954 * 20 11 10 38 38 H 1.09003 * 117.49896 * 214.97906 * 21 11 10 39 39 H 1.08997 * 117.49719 * 359.97066 * 21 11 10 40 40 H 1.08992 * 109.52249 * 359.87096 * 22 4 3 41 41 H 1.09001 * 109.50264 * 302.38502 * 23 22 4 42 42 H 1.09005 * 109.50381 * 62.49278 * 23 22 4 43 43 H 1.09004 * 109.46026 * 299.16319 * 24 23 22 44 44 H 1.08999 * 109.46422 * 179.19646 * 24 23 22 45 45 H 1.08993 * 109.47099 * 184.20999 * 26 25 24 46 46 H 1.08996 * 109.47287 * 304.21165 * 26 25 24 47 47 H 1.09002 * 109.47082 * 64.21233 * 26 25 24 48 48 H 1.08999 * 109.46178 * 301.72719 * 27 25 24 49 49 H 1.08999 * 109.45461 * 181.75618 * 27 25 24 50 50 H 1.08998 * 109.50342 * 180.88095 * 28 27 25 51 51 H 1.08997 * 109.53547 * 60.77831 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3559 -0.2582 5 6 3.2269 -1.8096 -1.5241 6 8 3.7206 -2.8958 -1.7449 7 6 2.7208 -0.9747 -2.6556 8 8 2.2095 0.1030 -2.4331 9 7 2.8324 -1.4189 -3.9232 10 6 2.2450 -0.6499 -5.0232 11 6 2.4116 -1.4239 -6.3323 12 6 3.8263 -1.8024 -6.6881 13 1 4.0263 -2.7435 -7.1787 14 6 4.8651 -0.9472 -6.3873 15 7 4.6297 0.1685 -5.7320 16 14 6.6070 -1.3733 -6.9105 17 1 6.6041 -2.6731 -7.6287 18 1 7.1272 -0.3124 -7.8100 19 1 7.4743 -1.4729 -5.7092 20 6 1.4619 -1.0806 -7.4817 21 6 1.2998 -2.3999 -6.7226 22 6 3.5241 -2.2194 0.8594 23 6 4.9949 -2.6184 0.7099 24 6 5.3786 -3.5688 1.8463 25 7 4.5223 -4.7608 1.7994 26 6 4.9526 -5.7574 2.7892 27 6 3.1096 -4.4075 1.9883 28 6 2.6580 -3.4822 0.8561 29 1 -1.0498 -0.0004 -0.0003 30 1 3.0091 0.3392 0.9704 31 1 3.0090 0.6721 -0.7783 32 1 3.3050 -2.2457 -4.1076 33 1 1.1846 -0.4894 -4.8285 34 1 2.7495 0.3129 -5.1035 35 1 5.3469 0.8045 -5.5838 36 1 0.7181 -0.3036 -7.3051 37 1 1.8601 -1.1289 -8.4952 38 1 1.5915 -3.3156 -7.2369 39 1 0.4498 -2.4909 -6.0463 40 1 3.3846 -1.6845 1.7988 41 1 5.1407 -3.1184 -0.2476 42 1 5.6202 -1.7267 0.7544 43 1 5.2457 -3.0635 2.8029 44 1 6.4214 -3.8661 1.7346 45 1 4.3496 -6.6590 2.6827 46 1 6.0025 -6.0011 2.6267 47 1 4.8250 -5.3514 3.7927 48 1 2.9872 -3.8983 2.9442 49 1 2.5043 -5.3140 1.9797 50 1 1.6138 -3.2075 1.0051 51 1 2.7666 -3.9954 -0.0993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341548269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:24 Heat of formation + Delta-G solvation = 37.119789 kcal Electronic energy + Delta-G solvation = -32018.017488 eV Core-core repulsion = 27920.780343 eV Total energy + Delta-G solvation = -4097.237145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69183 -38.93938 -37.72082 -36.73219 -36.04083 -33.37271 -32.98094 -32.19217 -31.62452 -30.98160 -27.26703 -27.07815 -26.02286 -25.43945 -23.72724 -23.27939 -21.81104 -21.22810 -20.39245 -19.38433 -18.95492 -18.29340 -17.11841 -16.74115 -16.14178 -15.68031 -15.51562 -15.13937 -15.09374 -14.79129 -14.71700 -14.57863 -14.16369 -13.91358 -13.60720 -13.40118 -13.17798 -13.05924 -12.82779 -12.66501 -12.56866 -12.52534 -11.86917 -11.78045 -11.66486 -11.43468 -11.20578 -11.09590 -10.94931 -10.74773 -10.71006 -10.56642 -10.51191 -10.28289 -10.12829 -9.86251 -9.67839 -9.03204 -8.89378 -8.78832 -8.66186 -8.45056 -8.31177 -7.95669 -6.03157 -4.21467 2.03151 2.47809 3.13102 3.23048 3.27494 3.33281 3.36476 3.76007 3.88131 4.13169 4.31046 4.58126 4.67294 4.73097 4.83935 4.93349 5.00240 5.15405 5.17130 5.22118 5.30009 5.34148 5.36794 5.40820 5.47502 5.54834 5.65800 5.68137 5.81936 5.89185 5.89803 5.99035 6.13371 6.22344 6.27524 6.32254 6.50575 6.59343 6.65988 6.67849 6.85400 6.89251 6.92805 7.03714 7.23124 7.24638 7.43687 7.55940 7.87282 7.93903 8.01862 8.28319 8.46633 8.80011 8.92285 9.42769 10.86998 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.003500 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.450990 B = 7997.943284 C = 9228.569422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.217 3.783 4 N -0.590 5.590 5 C 0.512 3.488 6 O -0.506 6.506 7 C 0.490 3.510 8 O -0.537 6.537 9 N -0.644 5.644 10 C 0.160 3.840 11 C 0.034 3.966 12 C -0.494 4.494 13 H 0.063 0.937 14 C 0.074 3.926 15 N -0.872 5.872 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.196 4.196 21 C -0.211 4.211 22 C 0.153 3.847 23 C -0.140 4.140 24 C 0.064 3.936 25 N -0.541 5.541 26 C 0.026 3.974 27 C 0.064 3.936 28 C -0.135 4.135 29 H 0.212 0.788 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.411 0.589 33 H 0.026 0.974 34 H 0.123 0.877 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.022 0.978 48 H 0.030 0.970 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -3.961 17.634 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.176 4.176 3 C 0.096 3.904 4 N -0.323 5.323 5 C 0.296 3.704 6 O -0.380 6.380 7 C 0.269 3.731 8 O -0.417 6.417 9 N -0.291 5.291 10 C 0.038 3.962 11 C 0.033 3.967 12 C -0.531 4.531 13 H 0.081 0.919 14 C -0.130 4.130 15 N -0.509 5.509 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.234 4.234 21 C -0.248 4.248 22 C 0.050 3.950 23 C -0.178 4.178 24 C -0.065 4.065 25 N -0.266 5.266 26 C -0.122 4.122 27 C -0.064 4.064 28 C -0.173 4.173 29 H 0.228 0.772 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.247 0.753 33 H 0.044 0.956 34 H 0.141 0.859 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.040 0.960 48 H 0.048 0.952 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.106 -3.879 17.286 17.840 hybrid contribution 0.678 -0.125 0.377 0.786 sum -1.428 -4.004 17.663 18.167 Atomic orbital electron populations 1.24730 0.95775 0.99179 1.02763 1.23265 0.94606 1.00962 0.98788 1.18815 0.84380 0.83756 1.03489 1.47870 1.64083 1.14994 1.05346 1.20699 0.79041 0.86684 0.83974 1.90693 1.41930 1.21465 1.83957 1.19742 0.82230 0.86620 0.84513 1.90650 1.45706 1.21422 1.83944 1.45594 1.52396 1.26637 1.04500 1.21329 0.93752 0.98251 0.82910 1.19222 0.90741 0.95609 0.91129 1.20590 0.88741 1.04801 1.38954 0.91880 1.24990 0.99119 0.95185 0.93696 1.69814 1.32684 1.09632 1.38793 0.86478 0.84247 0.78575 0.78455 1.19649 1.20889 1.20838 1.22944 1.04719 0.97273 0.98494 1.22956 1.02744 0.93859 1.05275 1.21186 0.94804 0.90835 0.88178 1.22117 0.94712 0.99201 1.01764 1.22024 0.97336 0.90239 0.96883 1.61871 1.02725 1.12190 1.49826 1.22338 1.01543 0.95683 0.92613 1.22002 0.88967 0.98936 0.96501 1.22015 0.98511 0.95512 1.01286 0.77158 0.89199 0.85312 0.75299 0.95563 0.85921 0.92711 0.91435 0.90102 0.90482 0.91351 0.89892 0.87817 0.91324 0.95222 0.90436 0.91379 0.91354 0.95954 0.95152 0.90521 0.91490 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.85 19.25 29.55 0.57 -2.28 16 2 C -0.17 -2.61 11.93 -37.12 -0.44 -3.05 16 3 C 0.22 2.98 5.53 -6.83 -0.04 2.94 16 4 N -0.59 -8.70 2.41 -169.79 -0.41 -9.11 16 5 C 0.51 9.38 7.06 -11.58 -0.08 9.29 16 6 O -0.51 -9.96 12.68 5.50 0.07 -9.89 16 7 C 0.49 10.16 7.71 -11.59 -0.09 10.07 16 8 O -0.54 -11.54 12.09 5.50 0.07 -11.47 16 9 N -0.64 -14.26 5.30 -60.73 -0.32 -14.58 16 10 C 0.16 3.73 4.61 -4.04 -0.02 3.71 16 11 C 0.03 0.79 2.04 -155.66 -0.32 0.48 16 12 C -0.49 -12.61 8.37 -34.44 -0.29 -12.90 16 13 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 14 C 0.07 1.89 5.37 -17.82 -0.10 1.79 16 15 N -0.87 -22.87 10.23 55.43 0.57 -22.30 16 16 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.20 -4.23 9.96 -26.69 -0.27 -4.49 16 21 C -0.21 -4.43 9.93 -26.69 -0.27 -4.69 16 22 C 0.15 1.89 2.62 -67.80 -0.18 1.71 16 23 C -0.14 -1.74 5.33 -26.65 -0.14 -1.89 16 24 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 25 N -0.54 -6.03 4.91 -242.97 -1.19 -7.22 16 26 C 0.03 0.23 9.59 60.06 0.58 0.80 16 27 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 28 C -0.13 -1.69 5.34 -26.65 -0.14 -1.83 16 29 H 0.21 2.18 7.80 -54.10 -0.42 1.76 16 30 H 0.09 0.91 7.78 -51.93 -0.40 0.51 16 31 H 0.13 2.02 5.92 -51.93 -0.31 1.71 16 32 H 0.41 9.35 7.49 -40.82 -0.31 9.04 16 33 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.12 3.21 5.80 -51.93 -0.30 2.91 16 35 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 0.85 7.71 -51.93 -0.40 0.45 16 41 H 0.10 1.66 5.92 -51.93 -0.31 1.35 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.09 1.49 6.30 -51.93 -0.33 1.16 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -28.29 408.72 -9.58 -37.86 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -8.23 Total: 14.22 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.26 Total: 0.96 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -1.36 Total: -53.21 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.14 Total: -21.36 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -28.29 -9.58 -37.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341548269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.984 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds