Wall clock time and date at job start Wed Apr 1 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47470 * 10.77533 * 3 2 1 5 5 C 1.34785 * 120.00164 * 83.05811 * 4 3 2 6 6 O 1.21344 * 120.00107 * 174.73895 * 5 4 3 7 7 C 1.49449 * 119.99563 * 354.74146 * 5 4 3 8 8 O 1.21343 * 120.00244 * 358.92674 * 7 5 4 9 9 N 1.34778 * 119.99577 * 178.92051 * 7 5 4 10 10 C 1.46508 * 119.99745 * 175.29370 * 9 7 5 11 11 C 1.52995 * 109.46696 * 184.61030 * 10 9 7 12 12 C 1.50700 * 115.55103 * 303.92026 * 11 10 9 13 13 H 1.07999 * 119.99945 * 144.24306 * 12 11 10 14 14 C 1.37880 * 120.00114 * 324.24309 * 12 11 10 15 15 N 1.31515 * 119.99858 * 3.31555 * 14 12 11 16 16 Si 1.86797 * 119.99918 * 183.31023 * 14 12 11 17 17 H 1.48501 * 109.47192 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47093 * 120.00276 * 16 14 12 19 19 H 1.48503 * 109.47127 * 239.99986 * 16 14 12 20 20 C 1.53004 * 117.49547 * 158.25774 * 11 10 9 21 21 C 1.53004 * 117.50218 * 89.59930 * 11 10 9 22 22 C 1.46501 * 120.00179 * 263.06252 * 4 3 2 23 23 C 1.53123 * 109.52341 * 239.68228 * 22 4 3 24 24 C 1.53035 * 109.28085 * 182.43948 * 23 22 4 25 25 N 1.46848 * 109.52218 * 59.17757 * 24 23 22 26 26 C 1.46898 * 110.99793 * 174.16128 * 25 24 23 27 27 C 1.46844 * 111.19912 * 298.25917 * 25 24 23 28 28 C 1.53039 * 109.52439 * 61.74469 * 27 25 24 29 29 H 4.40642 * 5.51366 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.46655 * 250.77485 * 3 2 1 31 31 H 1.09006 * 109.46658 * 130.77838 * 3 2 1 32 32 H 0.97000 * 120.00349 * 355.02172 * 9 7 5 33 33 H 1.08996 * 109.46742 * 304.60416 * 10 9 7 34 34 H 1.08993 * 109.47376 * 64.60679 * 10 9 7 35 35 H 0.97001 * 119.99839 * 185.00653 * 15 14 12 36 36 H 1.08999 * 117.50134 * 359.97438 * 20 11 10 37 37 H 1.08997 * 117.50277 * 145.01954 * 20 11 10 38 38 H 1.09003 * 117.49896 * 214.97906 * 21 11 10 39 39 H 1.08997 * 117.49719 * 359.97066 * 21 11 10 40 40 H 1.08992 * 109.52249 * 359.87096 * 22 4 3 41 41 H 1.09001 * 109.50264 * 302.38502 * 23 22 4 42 42 H 1.09005 * 109.50381 * 62.49278 * 23 22 4 43 43 H 1.09004 * 109.46026 * 299.16319 * 24 23 22 44 44 H 1.08999 * 109.46422 * 179.19646 * 24 23 22 45 45 H 1.08993 * 109.47099 * 184.20999 * 26 25 24 46 46 H 1.08996 * 109.47287 * 304.21165 * 26 25 24 47 47 H 1.09002 * 109.47082 * 64.21233 * 26 25 24 48 48 H 1.08999 * 109.46178 * 301.72719 * 27 25 24 49 49 H 1.08999 * 109.45461 * 181.75618 * 27 25 24 50 50 H 1.08998 * 109.50342 * 180.88095 * 28 27 25 51 51 H 1.08997 * 109.53547 * 60.77831 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3559 -0.2582 5 6 3.2269 -1.8096 -1.5241 6 8 3.7206 -2.8958 -1.7449 7 6 2.7208 -0.9747 -2.6556 8 8 2.2095 0.1030 -2.4331 9 7 2.8324 -1.4189 -3.9232 10 6 2.2450 -0.6499 -5.0232 11 6 2.4116 -1.4239 -6.3323 12 6 3.8263 -1.8024 -6.6881 13 1 4.0263 -2.7435 -7.1787 14 6 4.8651 -0.9472 -6.3873 15 7 4.6297 0.1685 -5.7320 16 14 6.6070 -1.3733 -6.9105 17 1 6.6041 -2.6731 -7.6287 18 1 7.1272 -0.3124 -7.8100 19 1 7.4743 -1.4729 -5.7092 20 6 1.4619 -1.0806 -7.4817 21 6 1.2998 -2.3999 -6.7226 22 6 3.5241 -2.2194 0.8594 23 6 4.9949 -2.6184 0.7099 24 6 5.3786 -3.5688 1.8463 25 7 4.5223 -4.7608 1.7994 26 6 4.9526 -5.7574 2.7892 27 6 3.1096 -4.4075 1.9883 28 6 2.6580 -3.4822 0.8561 29 1 -1.0498 -0.0004 -0.0003 30 1 3.0091 0.3392 0.9704 31 1 3.0090 0.6721 -0.7783 32 1 3.3050 -2.2457 -4.1076 33 1 1.1846 -0.4894 -4.8285 34 1 2.7495 0.3129 -5.1035 35 1 5.3469 0.8045 -5.5838 36 1 0.7181 -0.3036 -7.3051 37 1 1.8601 -1.1289 -8.4952 38 1 1.5915 -3.3156 -7.2369 39 1 0.4498 -2.4909 -6.0463 40 1 3.3846 -1.6845 1.7988 41 1 5.1407 -3.1184 -0.2476 42 1 5.6202 -1.7267 0.7544 43 1 5.2457 -3.0635 2.8029 44 1 6.4214 -3.8661 1.7346 45 1 4.3496 -6.6590 2.6827 46 1 6.0025 -6.0011 2.6267 47 1 4.8250 -5.3514 3.7927 48 1 2.9872 -3.8983 2.9442 49 1 2.5043 -5.3140 1.9797 50 1 1.6138 -3.2075 1.0051 51 1 2.7666 -3.9954 -0.0993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341548269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:23 Heat of formation + Delta-G solvation = 20.191184 kcal Electronic energy + Delta-G solvation = -32018.751567 eV Core-core repulsion = 27920.780343 eV Total energy + Delta-G solvation = -4097.971225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.02474 -40.22646 -39.05827 -38.43851 -37.30094 -34.74755 -34.31240 -34.12904 -32.69818 -31.86976 -28.63261 -28.23235 -27.62850 -27.03951 -24.88963 -24.17358 -23.12551 -22.84450 -21.49433 -21.18899 -20.32561 -19.56514 -18.54526 -18.10499 -17.69949 -17.01345 -16.81763 -16.66414 -16.24497 -16.14515 -16.00630 -15.61095 -15.48524 -15.40365 -14.93972 -14.58556 -14.54412 -14.44595 -14.16700 -13.97205 -13.63016 -13.41485 -13.39009 -13.33349 -12.95416 -12.78400 -12.61609 -12.57583 -12.30113 -12.15145 -12.06968 -12.05063 -11.69136 -11.66138 -11.50733 -11.26755 -10.97856 -10.90594 -10.72534 -10.27031 -10.10105 -10.00175 -9.71306 -9.21161 -7.97764 -6.21434 0.51264 1.25144 1.39937 1.45540 1.53795 1.97241 2.02683 2.32343 2.41133 2.77094 3.00476 3.05201 3.49979 3.59019 3.66729 3.80721 3.82730 3.95120 4.16389 4.23287 4.25233 4.35497 4.36719 4.50161 4.50840 4.58181 4.64970 4.68972 4.70005 4.74565 4.75671 4.84990 4.93646 4.94866 4.95317 5.04729 5.09271 5.13216 5.19690 5.26796 5.27628 5.50971 5.58276 5.58737 5.68471 5.95963 5.97440 6.15511 6.18941 6.35416 6.49636 6.77780 6.79665 6.90681 7.22438 7.43817 8.89590 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.003500 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.450990 B = 7997.943284 C = 9228.569422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.209 4.209 3 C 0.215 3.785 4 N -0.576 5.576 5 C 0.512 3.488 6 O -0.526 6.526 7 C 0.484 3.516 8 O -0.546 6.546 9 N -0.651 5.651 10 C 0.174 3.826 11 C 0.004 3.996 12 C -0.505 4.505 13 H 0.055 0.945 14 C 0.038 3.962 15 N -0.890 5.890 16 Si 0.946 3.054 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.287 1.287 20 C -0.190 4.190 21 C -0.192 4.192 22 C 0.150 3.850 23 C -0.137 4.137 24 C 0.069 3.931 25 N -0.568 5.568 26 C 0.028 3.972 27 C 0.070 3.930 28 C -0.130 4.130 29 H 0.239 0.761 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.406 0.594 33 H 0.027 0.973 34 H 0.094 0.906 35 H 0.259 0.741 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.036 0.964 48 H 0.051 0.949 49 H 0.081 0.919 50 H 0.069 0.931 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -4.308 19.820 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.210 4.210 3 C 0.094 3.906 4 N -0.308 5.308 5 C 0.295 3.705 6 O -0.403 6.403 7 C 0.264 3.736 8 O -0.426 6.426 9 N -0.299 5.299 10 C 0.051 3.949 11 C 0.004 3.996 12 C -0.542 4.542 13 H 0.073 0.927 14 C -0.164 4.164 15 N -0.527 5.527 16 Si 0.773 3.227 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.213 1.213 20 C -0.228 4.228 21 C -0.229 4.229 22 C 0.048 3.952 23 C -0.175 4.175 24 C -0.060 4.060 25 N -0.293 5.293 26 C -0.119 4.119 27 C -0.058 4.058 28 C -0.169 4.169 29 H 0.255 0.745 30 H 0.151 0.849 31 H 0.123 0.877 32 H 0.241 0.759 33 H 0.045 0.955 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.087 0.913 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.486 -4.219 19.502 20.108 hybrid contribution 0.728 -0.003 -0.277 0.779 sum -1.758 -4.222 19.225 19.762 Atomic orbital electron populations 1.25542 0.96762 0.97889 1.01680 1.23640 0.95370 1.02158 0.99875 1.18916 0.84259 0.82547 1.04888 1.47931 1.62570 1.15648 1.04606 1.20260 0.79441 0.86123 0.84651 1.90699 1.43098 1.22061 1.84392 1.20268 0.81729 0.86727 0.84827 1.90642 1.45883 1.21863 1.84259 1.45578 1.52906 1.26420 1.04973 1.20996 0.93282 0.97096 0.83520 1.19275 0.90706 0.97765 0.91896 1.20747 0.90121 1.04461 1.38883 0.92723 1.25525 1.01735 0.95211 0.93895 1.69963 1.33094 1.10171 1.39523 0.85686 0.80907 0.78331 0.77810 1.19430 1.20600 1.21310 1.22957 1.04055 0.98082 0.97741 1.22947 1.01736 0.93583 1.04611 1.21469 0.94655 0.90786 0.88250 1.22040 0.94992 0.99705 1.00777 1.21974 0.97381 0.89840 0.96760 1.61832 1.03100 1.12959 1.51447 1.22352 1.01752 0.95180 0.92651 1.21950 0.88810 0.98834 0.96232 1.21928 0.98808 0.95715 1.00404 0.74457 0.84936 0.87653 0.75901 0.95453 0.88856 0.93100 0.90126 0.90235 0.90042 0.89896 0.86430 0.91754 0.90565 0.92992 0.90113 0.91063 0.91044 0.94538 0.93068 0.90057 0.91250 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.19 19.25 74.32 1.43 -3.76 16 2 C -0.21 -5.96 11.93 31.13 0.37 -5.59 16 3 C 0.21 5.63 5.53 84.58 0.47 6.10 16 4 N -0.58 -16.62 2.41 -809.44 -1.95 -18.58 16 5 C 0.51 19.17 7.06 87.27 0.62 19.79 16 6 O -0.53 -21.52 12.68 -3.23 -0.04 -21.56 16 7 C 0.48 20.65 7.71 87.27 0.67 21.32 16 8 O -0.55 -23.96 12.09 -3.23 -0.04 -24.00 16 9 N -0.65 -29.77 5.30 -464.42 -2.46 -32.23 16 10 C 0.17 8.30 4.61 86.38 0.40 8.70 16 11 C 0.00 0.20 2.04 -52.93 -0.11 0.09 16 12 C -0.50 -26.13 8.37 25.60 0.21 -25.92 16 13 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 14 C 0.04 1.96 5.37 84.66 0.45 2.42 16 15 N -0.89 -47.75 10.23 21.45 0.22 -47.53 16 16 Si 0.95 42.41 29.54 68.60 2.03 44.44 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 C -0.19 -8.07 9.96 30.62 0.30 -7.77 16 21 C -0.19 -7.87 9.93 30.62 0.30 -7.56 16 22 C 0.15 3.45 2.62 45.07 0.12 3.56 16 23 C -0.14 -3.28 5.33 30.65 0.16 -3.11 16 24 C 0.07 1.29 5.46 86.32 0.47 1.76 16 25 N -0.57 -11.62 4.91 -922.61 -4.53 -16.15 16 26 C 0.03 0.42 9.59 127.69 1.22 1.64 16 27 C 0.07 1.31 5.46 86.33 0.47 1.78 16 28 C -0.13 -3.12 5.34 30.65 0.16 -2.96 16 29 H 0.24 4.35 7.80 -4.43 -0.03 4.31 16 30 H 0.13 2.29 7.78 -2.39 -0.02 2.27 16 31 H 0.11 3.31 5.92 -2.38 -0.01 3.30 16 32 H 0.41 19.20 7.49 -92.71 -0.69 18.50 16 33 H 0.03 1.26 8.10 -2.39 -0.02 1.25 16 34 H 0.09 5.05 5.80 -2.39 -0.01 5.03 16 35 H 0.26 13.55 8.32 -92.71 -0.77 12.78 16 36 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.12 1.95 7.71 -2.39 -0.02 1.93 16 41 H 0.06 2.10 5.92 -2.39 -0.01 2.09 16 42 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 47 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 50 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.06 1.84 6.30 -2.39 -0.02 1.83 16 Total: -1.00 -62.46 408.72 1.19 -61.27 By element: Atomic # 1 Polarization: 43.61 SS G_CDS: 0.23 Total: 43.84 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 7.74 Total: 10.50 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -8.73 Total: -114.49 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.08 Total: -45.56 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -62.46 1.19 -61.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341548269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.457 kcal (2) G-P(sol) polarization free energy of solvation -62.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds