Wall clock time and date at job start Wed Apr 1 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47683 * 2 1 4 4 C 1.35668 * 117.00669 * 179.97438 * 3 2 1 5 5 C 1.38778 * 119.64458 * 180.02562 * 4 3 2 6 6 C 1.38584 * 119.27692 * 179.97438 * 5 4 3 7 7 C 1.38501 * 118.57060 * 359.73279 * 6 5 4 8 8 C 1.38978 * 119.21749 * 0.52789 * 7 6 5 9 9 N 1.39003 * 119.66934 * 179.73380 * 8 7 6 10 10 C 1.46846 * 110.99663 * 303.93866 * 9 8 7 11 11 C 1.53040 * 109.51964 * 174.15929 * 10 9 8 12 12 C 1.53119 * 109.28089 * 59.17912 * 11 10 9 13 13 N 1.46496 * 109.52113 * 182.44092 * 12 11 10 14 14 C 1.34775 * 119.99879 * 274.68043 * 13 12 11 15 15 O 1.21284 * 119.99953 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.53007 * 109.46873 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46873 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99902 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00149 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00186 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47372 * 89.99844 * 22 20 18 24 24 H 1.48505 * 109.47093 * 209.99626 * 22 20 18 25 25 H 1.48502 * 109.47186 * 329.99758 * 22 20 18 26 26 C 1.53124 * 109.15841 * 302.34776 * 12 11 10 27 27 C 1.46846 * 111.00085 * 179.72814 * 9 8 7 28 28 N 1.32319 * 119.63384 * 359.97438 * 4 3 2 29 29 H 1.09006 * 109.47185 * 60.00235 * 1 2 3 30 30 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47096 * 300.00393 * 1 2 3 32 32 H 1.08998 * 109.47096 * 239.99607 * 2 1 3 33 33 H 1.09008 * 109.46833 * 120.00162 * 2 1 3 34 34 H 1.08004 * 120.35759 * 359.95075 * 5 4 3 35 35 H 1.08007 * 120.71373 * 179.97438 * 6 5 4 36 36 H 1.07995 * 120.39196 * 180.26171 * 7 6 5 37 37 H 1.08996 * 109.46231 * 294.17675 * 10 9 8 38 38 H 1.09004 * 109.46418 * 54.14515 * 10 9 8 39 39 H 1.09004 * 109.50602 * 299.23671 * 11 10 9 40 40 H 1.08998 * 109.50366 * 179.12192 * 11 10 9 41 41 H 1.08999 * 109.51878 * 62.24548 * 12 11 10 42 42 H 0.97004 * 120.00174 * 94.68855 * 13 12 11 43 43 H 1.08994 * 109.47193 * 299.99649 * 16 14 13 44 44 H 1.09000 * 109.46869 * 60.00312 * 16 14 13 45 45 H 1.08994 * 109.46967 * 299.99840 * 17 16 14 46 46 H 1.08991 * 109.47254 * 60.00377 * 17 16 14 47 47 H 0.96999 * 120.00455 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.49853 * 297.70868 * 26 12 11 49 49 H 1.08996 * 109.49839 * 177.59898 * 26 12 11 50 50 H 1.09001 * 109.45990 * 305.85542 * 27 9 8 51 51 H 1.08997 * 109.46419 * 65.82223 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5250 0.0005 5 6 3.8738 2.8107 0.0011 6 6 5.2489 2.9834 0.0022 7 6 6.0577 1.8592 0.0084 8 6 5.4693 0.6001 0.0021 9 7 6.2722 -0.5346 0.0025 10 6 7.2062 -0.5188 -1.1305 11 6 8.1680 -1.7038 -1.0170 12 6 7.3653 -3.0077 -1.0112 13 7 8.2764 -4.1426 -0.8442 14 6 8.8857 -4.6815 -1.9188 15 8 8.6801 -4.2264 -3.0241 16 6 9.8225 -5.8494 -1.7470 17 6 10.3743 -6.2656 -3.1120 18 6 11.3106 -7.4339 -2.9403 19 1 11.4934 -7.8393 -1.9561 20 6 11.9331 -7.9859 -4.0398 21 7 12.7505 -9.0051 -3.8899 22 14 11.6164 -7.2851 -5.7421 23 1 12.6059 -6.2157 -6.0292 24 1 11.7466 -8.3644 -6.7538 25 1 10.2450 -6.7182 -5.7968 26 6 6.3666 -2.9779 0.1491 27 6 5.4571 -1.7560 0.0018 28 7 4.1507 0.4705 0.0015 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.2159 3.6672 0.0003 35 1 5.6804 3.9735 0.0022 36 1 7.1330 1.9597 0.0136 37 1 6.6470 -0.5929 -2.0632 38 1 7.7737 0.4118 -1.1205 39 1 8.7374 -1.6229 -0.0910 40 1 8.8511 -1.7007 -1.8663 41 1 6.8262 -3.1076 -1.9533 42 1 8.4410 -4.5064 0.0399 43 1 10.6463 -5.5614 -1.0941 44 1 9.2826 -6.6860 -1.3034 45 1 9.5503 -6.5537 -3.7646 46 1 10.9141 -5.4292 -3.5560 47 1 13.1887 -9.3932 -4.6633 48 1 6.9077 -2.9171 1.0934 49 1 5.7628 -3.8852 0.1329 50 1 4.7542 -1.7240 0.8343 51 1 4.9061 -1.8244 -0.9362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001472352855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:15 Heat of formation + Delta-G solvation = -40.686950 kcal Electronic energy + Delta-G solvation = -29944.820522 eV Core-core repulsion = 25844.209423 eV Total energy + Delta-G solvation = -4100.611099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33666 -39.95249 -39.02875 -37.77602 -35.15428 -33.47569 -32.88478 -32.48583 -31.69698 -31.25074 -30.87163 -29.08002 -26.35493 -24.85290 -24.35658 -23.51182 -22.48407 -22.22508 -21.11488 -20.37301 -19.50919 -18.86564 -17.64895 -17.14698 -16.68757 -16.42798 -16.24537 -15.95743 -15.80382 -15.29897 -15.12036 -14.72579 -14.26507 -14.13524 -14.01958 -13.95855 -13.76851 -13.48209 -13.23619 -13.00039 -12.77072 -12.67740 -12.55371 -12.43308 -12.32030 -11.93554 -11.84092 -11.55613 -11.41324 -11.22097 -11.10718 -10.94931 -10.81158 -10.38587 -10.15854 -10.04659 -10.02649 -9.78876 -9.63104 -9.23255 -9.15897 -8.89071 -8.50937 -8.27425 -6.03174 -4.01871 0.81066 0.95588 2.62978 3.03822 3.10701 3.37083 3.37698 3.44076 3.48222 3.54866 3.99949 4.42024 4.50609 4.57255 4.58835 4.59784 4.68153 4.71157 4.81962 4.84481 4.88891 4.94423 5.01838 5.03569 5.19922 5.24338 5.31726 5.32315 5.36833 5.40843 5.46097 5.51931 5.57182 5.59572 5.66453 5.72822 5.87697 5.88276 6.00332 6.06160 6.09543 6.12151 6.35738 6.60695 6.64826 6.70259 6.99692 7.36273 7.43502 7.53873 7.76117 7.80648 8.50003 8.65527 8.99994 9.59908 11.09646 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.001789 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.774830 B =15650.187134 C =16119.805676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.067 3.933 3 O -0.308 6.308 4 C 0.349 3.651 5 C -0.224 4.224 6 C -0.020 4.020 7 C -0.226 4.226 8 C 0.355 3.645 9 N -0.475 5.475 10 C 0.064 3.936 11 C -0.128 4.128 12 C 0.142 3.858 13 N -0.737 5.737 14 C 0.511 3.489 15 O -0.541 6.541 16 C -0.123 4.123 17 C 0.002 3.998 18 C -0.525 4.525 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.903 5.903 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 C -0.127 4.127 27 C 0.073 3.927 28 N -0.575 5.575 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.399 0.601 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.023 0.977 46 H 0.019 0.981 47 H 0.263 0.737 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.634 24.470 12.729 35.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.215 6.215 4 C 0.169 3.831 5 C -0.246 4.246 6 C -0.045 4.045 7 C -0.249 4.249 8 C 0.124 3.876 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.167 4.167 12 C 0.037 3.963 13 N -0.390 5.390 14 C 0.300 3.700 15 O -0.417 6.417 16 C -0.163 4.163 17 C -0.036 4.036 18 C -0.563 4.563 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.542 5.542 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.186 1.186 26 C -0.166 4.166 27 C -0.055 4.055 28 N -0.305 5.305 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.233 0.767 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.041 0.959 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.107 0.893 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.938 23.939 12.218 34.693 hybrid contribution 0.025 0.648 -0.956 1.155 sum -21.913 24.587 11.262 34.807 Atomic orbital electron populations 1.21825 0.92965 1.03020 1.03269 1.22596 0.94753 0.80964 1.02520 1.86240 1.16914 1.30760 1.87585 1.19525 0.83524 0.89488 0.90559 1.20911 0.95875 0.95519 1.12257 1.21242 0.92084 0.99123 0.92059 1.21420 1.01520 0.91219 1.10692 1.19432 0.86500 0.90752 0.90883 1.59139 1.17315 1.01235 1.41524 1.22267 0.93683 1.00444 0.89767 1.22045 0.98003 0.92895 1.03806 1.20911 0.90339 0.85784 0.99283 1.46208 1.47823 1.34341 1.10602 1.21553 0.80299 0.84428 0.83745 1.90647 1.62852 1.62904 1.25312 1.21673 0.97223 0.94127 1.03247 1.19362 0.96415 0.96673 0.91161 1.21121 1.25460 1.14008 0.95709 0.90939 1.24972 0.94519 0.94576 0.99192 1.69907 1.29798 1.23852 1.30667 0.86796 0.79874 0.78737 0.84143 1.20253 1.21455 1.18559 1.21956 0.97710 0.97857 0.99052 1.21912 0.94244 0.86592 1.02722 1.67156 1.05406 1.33874 1.24080 0.91656 0.90208 0.91660 0.91657 0.91634 0.84344 0.83970 0.84310 0.93188 0.89354 0.90464 0.89917 0.89768 0.76678 0.89614 0.89625 0.95884 0.96309 0.92726 0.90360 0.90207 0.89307 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.07 0.52 6.03 37.16 0.22 0.74 16 3 O -0.31 -2.98 10.11 -18.71 -0.19 -3.17 16 4 C 0.35 3.53 7.48 -17.14 -0.13 3.40 16 5 C -0.22 -1.84 10.03 -39.25 -0.39 -2.23 16 6 C -0.02 -0.14 10.16 -39.36 -0.40 -0.54 16 7 C -0.23 -1.86 9.18 -39.21 -0.36 -2.22 16 8 C 0.36 3.56 6.40 -155.00 -0.99 2.57 16 9 N -0.47 -4.54 4.68 -173.26 -0.81 -5.35 16 10 C 0.06 0.60 5.25 -3.83 -0.02 0.58 16 11 C -0.13 -1.35 5.67 -26.65 -0.15 -1.50 16 12 C 0.14 1.61 2.52 -67.81 -0.17 1.44 16 13 N -0.74 -9.29 5.08 -53.69 -0.27 -9.57 16 14 C 0.51 8.99 7.80 -10.99 -0.09 8.90 16 15 O -0.54 -11.66 15.65 5.55 0.09 -11.57 16 16 C -0.12 -2.34 5.64 -27.88 -0.16 -2.49 16 17 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 18 C -0.53 -15.01 9.66 -34.44 -0.33 -15.34 16 19 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 22 Si 0.88 22.60 27.47 -169.99 -4.67 17.93 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 26 C -0.13 -1.11 5.57 -26.65 -0.15 -1.26 16 27 C 0.07 0.67 4.65 -3.84 -0.02 0.65 16 28 N -0.58 -6.09 7.53 -12.51 -0.09 -6.19 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.07 0.51 8.10 -51.92 -0.42 0.09 16 34 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 36 H 0.14 0.93 7.15 -52.49 -0.38 0.56 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.69 6.68 -51.93 -0.35 0.35 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 42 H 0.40 3.93 8.61 -40.82 -0.35 3.57 16 43 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 45 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 46 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.83 7.70 -51.93 -0.40 0.43 16 51 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 LS Contribution 410.90 15.07 6.19 6.19 Total: -1.00 -34.84 410.90 -10.48 -45.31 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.55 Total: -0.51 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.94 Total: -5.87 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.40 Total: -48.32 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.10 Total: -14.74 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.84 -10.48 -45.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472352855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.627 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds