Wall clock time and date at job start Wed Apr 1 2020 05:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47683 * 2 1 4 4 C 1.35668 * 117.00669 * 179.97438 * 3 2 1 5 5 C 1.38778 * 119.64458 * 180.02562 * 4 3 2 6 6 C 1.38584 * 119.27692 * 179.97438 * 5 4 3 7 7 C 1.38501 * 118.57060 * 359.73279 * 6 5 4 8 8 C 1.38978 * 119.21749 * 0.52789 * 7 6 5 9 9 N 1.39003 * 119.66934 * 179.73380 * 8 7 6 10 10 C 1.46846 * 110.99663 * 303.93866 * 9 8 7 11 11 C 1.53040 * 109.51964 * 174.15929 * 10 9 8 12 12 C 1.53119 * 109.28089 * 59.17912 * 11 10 9 13 13 N 1.46496 * 109.52113 * 182.44092 * 12 11 10 14 14 C 1.34775 * 119.99879 * 274.68043 * 13 12 11 15 15 O 1.21284 * 119.99953 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.53007 * 109.46873 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46873 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99902 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00149 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00186 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47372 * 89.99844 * 22 20 18 24 24 H 1.48505 * 109.47093 * 209.99626 * 22 20 18 25 25 H 1.48502 * 109.47186 * 329.99758 * 22 20 18 26 26 C 1.53124 * 109.15841 * 302.34776 * 12 11 10 27 27 C 1.46846 * 111.00085 * 179.72814 * 9 8 7 28 28 N 1.32319 * 119.63384 * 359.97438 * 4 3 2 29 29 H 1.09006 * 109.47185 * 60.00235 * 1 2 3 30 30 H 1.08997 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47096 * 300.00393 * 1 2 3 32 32 H 1.08998 * 109.47096 * 239.99607 * 2 1 3 33 33 H 1.09008 * 109.46833 * 120.00162 * 2 1 3 34 34 H 1.08004 * 120.35759 * 359.95075 * 5 4 3 35 35 H 1.08007 * 120.71373 * 179.97438 * 6 5 4 36 36 H 1.07995 * 120.39196 * 180.26171 * 7 6 5 37 37 H 1.08996 * 109.46231 * 294.17675 * 10 9 8 38 38 H 1.09004 * 109.46418 * 54.14515 * 10 9 8 39 39 H 1.09004 * 109.50602 * 299.23671 * 11 10 9 40 40 H 1.08998 * 109.50366 * 179.12192 * 11 10 9 41 41 H 1.08999 * 109.51878 * 62.24548 * 12 11 10 42 42 H 0.97004 * 120.00174 * 94.68855 * 13 12 11 43 43 H 1.08994 * 109.47193 * 299.99649 * 16 14 13 44 44 H 1.09000 * 109.46869 * 60.00312 * 16 14 13 45 45 H 1.08994 * 109.46967 * 299.99840 * 17 16 14 46 46 H 1.08991 * 109.47254 * 60.00377 * 17 16 14 47 47 H 0.96999 * 120.00455 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.49853 * 297.70868 * 26 12 11 49 49 H 1.08996 * 109.49839 * 177.59898 * 26 12 11 50 50 H 1.09001 * 109.45990 * 305.85542 * 27 9 8 51 51 H 1.08997 * 109.46419 * 65.82223 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5250 0.0005 5 6 3.8738 2.8107 0.0011 6 6 5.2489 2.9834 0.0022 7 6 6.0577 1.8592 0.0084 8 6 5.4693 0.6001 0.0021 9 7 6.2722 -0.5346 0.0025 10 6 7.2062 -0.5188 -1.1305 11 6 8.1680 -1.7038 -1.0170 12 6 7.3653 -3.0077 -1.0112 13 7 8.2764 -4.1426 -0.8442 14 6 8.8857 -4.6815 -1.9188 15 8 8.6801 -4.2264 -3.0241 16 6 9.8225 -5.8494 -1.7470 17 6 10.3743 -6.2656 -3.1120 18 6 11.3106 -7.4339 -2.9403 19 1 11.4934 -7.8393 -1.9561 20 6 11.9331 -7.9859 -4.0398 21 7 12.7505 -9.0051 -3.8899 22 14 11.6164 -7.2851 -5.7421 23 1 12.6059 -6.2157 -6.0292 24 1 11.7466 -8.3644 -6.7538 25 1 10.2450 -6.7182 -5.7968 26 6 6.3666 -2.9779 0.1491 27 6 5.4571 -1.7560 0.0018 28 7 4.1507 0.4705 0.0015 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.2159 3.6672 0.0003 35 1 5.6804 3.9735 0.0022 36 1 7.1330 1.9597 0.0136 37 1 6.6470 -0.5929 -2.0632 38 1 7.7737 0.4118 -1.1205 39 1 8.7374 -1.6229 -0.0910 40 1 8.8511 -1.7007 -1.8663 41 1 6.8262 -3.1076 -1.9533 42 1 8.4410 -4.5064 0.0399 43 1 10.6463 -5.5614 -1.0941 44 1 9.2826 -6.6860 -1.3034 45 1 9.5503 -6.5537 -3.7646 46 1 10.9141 -5.4292 -3.5560 47 1 13.1887 -9.3932 -4.6633 48 1 6.9077 -2.9171 1.0934 49 1 5.7628 -3.8852 0.1329 50 1 4.7542 -1.7240 0.8343 51 1 4.9061 -1.8244 -0.9362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472352855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:14 Heat of formation + Delta-G solvation = -64.584400 kcal Electronic energy + Delta-G solvation = -29945.856793 eV Core-core repulsion = 25844.209423 eV Total energy + Delta-G solvation = -4101.647370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.02706 -41.00202 -40.00172 -38.57804 -36.18655 -35.50385 -33.70297 -33.38987 -33.01229 -32.26911 -31.80203 -29.83819 -28.07240 -25.72488 -25.15193 -24.26406 -23.34162 -23.04647 -22.58499 -21.39137 -20.80141 -19.52403 -19.18971 -18.32756 -17.53323 -17.36457 -17.25112 -16.90291 -16.70625 -16.47426 -16.23606 -15.97292 -15.56351 -15.09834 -14.97238 -14.81096 -14.64918 -14.57817 -14.35701 -14.27017 -14.07356 -13.50785 -13.39582 -13.38821 -13.18314 -12.98619 -12.90453 -12.66242 -12.49117 -12.32373 -12.13838 -12.01183 -11.95866 -11.77053 -11.76093 -11.65662 -11.39401 -11.01623 -10.78139 -10.71895 -10.70150 -10.33409 -10.03975 -8.95637 -8.31412 -6.34108 0.15129 0.34058 1.32653 1.34721 1.49635 1.70898 2.02213 2.22122 2.34731 2.35950 2.80237 3.04288 3.33982 3.60318 3.77324 3.96985 4.01700 4.04267 4.05480 4.07129 4.14410 4.15782 4.24845 4.28386 4.36744 4.40756 4.41815 4.50443 4.51415 4.53816 4.60226 4.74377 4.81162 4.84230 4.91291 4.95228 4.97851 5.02062 5.08961 5.17385 5.21444 5.28159 5.34912 5.39824 5.45813 5.55615 5.61990 5.63908 5.91785 6.23864 6.32484 6.62928 6.72509 6.85897 7.31229 7.34600 8.84191 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.001789 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.774830 B =15650.187134 C =16119.805676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 O -0.318 6.318 4 C 0.323 3.677 5 C -0.226 4.226 6 C -0.013 4.013 7 C -0.226 4.226 8 C 0.332 3.668 9 N -0.473 5.473 10 C 0.070 3.930 11 C -0.121 4.121 12 C 0.141 3.859 13 N -0.713 5.713 14 C 0.516 3.484 15 O -0.586 6.586 16 C -0.117 4.117 17 C 0.005 3.995 18 C -0.529 4.529 19 H 0.051 0.949 20 C 0.013 3.987 21 N -0.943 5.943 22 Si 0.938 3.062 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.262 1.262 26 C -0.114 4.114 27 C 0.078 3.922 28 N -0.591 5.591 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.155 0.845 35 H 0.178 0.822 36 H 0.156 0.844 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.417 0.583 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.008 0.992 46 H 0.008 0.992 47 H 0.267 0.733 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.342 26.539 13.790 37.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.009 4.009 3 O -0.226 6.226 4 C 0.144 3.856 5 C -0.247 4.247 6 C -0.039 4.039 7 C -0.249 4.249 8 C 0.101 3.899 9 N -0.191 5.191 10 C -0.056 4.056 11 C -0.160 4.160 12 C 0.036 3.964 13 N -0.365 5.365 14 C 0.305 3.695 15 O -0.466 6.466 16 C -0.157 4.157 17 C -0.033 4.033 18 C -0.567 4.567 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.584 5.584 22 Si 0.763 3.237 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.152 4.152 27 C -0.049 4.049 28 N -0.321 5.321 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.173 0.827 35 H 0.195 0.805 36 H 0.174 0.826 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.254 0.746 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.076 0.924 48 H 0.112 0.888 49 H 0.107 0.893 50 H 0.107 0.893 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.665 26.020 13.340 36.996 hybrid contribution 0.217 0.036 -1.197 1.217 sum -22.448 26.056 12.143 36.473 Atomic orbital electron populations 1.21824 0.91164 1.04094 1.03389 1.22677 0.96137 0.80339 1.01768 1.86231 1.17017 1.31583 1.87788 1.19891 0.83679 0.90260 0.91746 1.21257 0.96881 0.95302 1.11275 1.21665 0.91418 1.00377 0.90389 1.21713 1.02595 0.90846 1.09747 1.19691 0.86525 0.91523 0.92147 1.59214 1.17307 1.01225 1.41321 1.22204 0.93424 1.00681 0.89256 1.21937 0.97819 0.92798 1.03455 1.21008 0.90483 0.85536 0.99360 1.45934 1.46455 1.33923 1.10223 1.21174 0.80276 0.84039 0.84040 1.90638 1.64528 1.64213 1.27214 1.21501 0.98405 0.95575 1.00227 1.19218 0.95058 0.94769 0.94260 1.21447 1.25667 1.14795 0.94774 0.93108 1.25800 0.94515 0.95000 1.03135 1.70018 1.31099 1.25291 1.31949 0.85836 0.79664 0.78389 0.79858 1.19329 1.20404 1.18686 1.21869 0.97015 0.98038 0.98305 1.21825 0.94253 0.86915 1.01941 1.67079 1.05912 1.34594 1.24498 0.91657 0.88659 0.91335 0.92681 0.92088 0.82705 0.80492 0.82620 0.94650 0.87543 0.89159 0.92031 0.92322 0.74575 0.87849 0.88011 0.97356 0.97317 0.92403 0.88780 0.89321 0.89285 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.07 1.03 6.03 71.98 0.43 1.46 16 3 O -0.32 -6.15 10.11 -89.85 -0.91 -7.06 16 4 C 0.32 6.40 7.48 84.75 0.63 7.03 16 5 C -0.23 -3.33 10.03 22.48 0.23 -3.10 16 6 C -0.01 -0.15 10.16 22.42 0.23 0.08 16 7 C -0.23 -3.24 9.18 22.51 0.21 -3.03 16 8 C 0.33 6.29 6.40 133.00 0.85 7.14 16 9 N -0.47 -8.46 4.68 -702.07 -3.28 -11.74 16 10 C 0.07 1.23 5.25 86.33 0.45 1.69 16 11 C -0.12 -2.41 5.67 30.65 0.17 -2.23 16 12 C 0.14 3.04 2.52 45.07 0.11 3.16 16 13 N -0.71 -16.75 5.08 -442.15 -2.25 -18.99 16 14 C 0.52 17.69 7.80 87.66 0.68 18.38 16 15 O -0.59 -25.34 15.65 -3.04 -0.05 -25.39 16 16 C -0.12 -4.34 5.64 29.85 0.17 -4.17 16 17 C 0.00 0.24 3.33 29.85 0.10 0.34 16 18 C -0.53 -30.48 9.66 25.60 0.25 -30.23 16 19 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 20 C 0.01 0.78 5.47 84.66 0.46 1.25 16 21 N -0.94 -59.05 13.96 21.45 0.30 -58.76 16 22 Si 0.94 46.89 27.47 68.60 1.88 48.78 16 23 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.26 -13.08 6.54 99.48 0.65 -12.43 16 26 C -0.11 -1.79 5.57 30.65 0.17 -1.62 16 27 C 0.08 1.39 4.65 86.32 0.40 1.79 16 28 N -0.59 -12.37 7.53 -306.33 -2.31 -14.67 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 34 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 36 H 0.16 1.62 7.15 -2.91 -0.02 1.60 16 37 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 1.47 6.68 -2.38 -0.02 1.45 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 42 H 0.42 7.00 8.61 -92.71 -0.80 6.21 16 43 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 45 H 0.01 0.42 7.16 -2.39 -0.02 0.41 16 46 H 0.01 0.43 7.53 -2.39 -0.02 0.42 16 47 H 0.27 15.64 8.31 -92.71 -0.77 14.86 16 48 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.09 1.60 7.70 -2.39 -0.02 1.58 16 51 H 0.04 0.76 8.11 -2.39 -0.02 0.74 16 Total: -1.00 -76.69 410.90 -0.25 -76.94 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.07 Total: 13.73 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 6.29 Total: -2.83 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -7.54 Total: -104.16 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.96 Total: -32.45 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.88 Total: 48.78 kcal Total: -76.69 -0.25 -76.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472352855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.353 kcal (2) G-P(sol) polarization free energy of solvation -76.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds