Wall clock time and date at job start Wed Apr 1 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 119.99710 * 2 1 4 4 H 1.08003 * 120.00092 * 204.25599 * 3 2 1 5 5 C 1.38811 * 120.00458 * 24.25801 * 3 2 1 6 6 N 1.31620 * 119.99467 * 14.09323 * 5 3 2 7 7 Si 1.86799 * 120.00127 * 194.10061 * 5 3 2 8 8 H 1.48499 * 109.47301 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47194 * 119.99876 * 7 5 3 10 10 H 1.48503 * 109.46600 * 239.99465 * 7 5 3 11 11 C 1.46498 * 120.00034 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46992 * 269.99760 * 11 2 1 13 13 C 1.53003 * 109.46850 * 179.97438 * 12 11 2 14 14 C 1.53039 * 109.45654 * 175.00235 * 13 12 11 15 15 C 1.53198 * 109.31129 * 181.38622 * 14 13 12 16 16 N 1.46920 * 108.77615 * 305.36300 * 15 14 13 17 17 C 1.34774 * 120.63271 * 233.58708 * 16 15 14 18 18 O 1.21477 * 120.00074 * 5.50306 * 17 16 15 19 19 C 1.48457 * 120.00063 * 185.50513 * 17 16 15 20 20 C 1.41151 * 120.53847 * 36.48943 * 19 17 16 21 21 C 1.35267 * 119.86802 * 180.24962 * 20 19 17 22 22 N 1.35701 * 121.00104 * 359.47789 * 21 20 19 23 23 C 1.46497 * 119.44377 * 180.29671 * 22 21 20 24 24 C 1.34601 * 121.11736 * 0.27946 * 22 21 20 25 25 O 1.22009 * 119.96470 * 180.02562 * 24 22 21 26 26 C 1.38296 * 120.53787 * 216.22005 * 19 17 16 27 27 C 1.46931 * 118.73738 * 53.86103 * 16 15 14 28 28 C 1.53035 * 109.46162 * 295.06646 * 13 12 11 29 29 H 1.09000 * 109.47348 * 272.06403 * 1 2 3 30 30 H 1.08998 * 109.47124 * 32.06046 * 1 2 3 31 31 H 1.09006 * 109.46975 * 152.06286 * 1 2 3 32 32 H 0.97005 * 119.99714 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.47255 * 149.99519 * 11 2 1 34 34 H 1.09003 * 109.47264 * 30.00229 * 11 2 1 35 35 H 1.09001 * 109.47002 * 60.00505 * 12 11 2 36 36 H 1.08997 * 109.47116 * 300.00275 * 12 11 2 37 37 H 1.08996 * 109.46103 * 55.03190 * 13 12 11 38 38 H 1.08994 * 109.50362 * 61.43438 * 14 13 12 39 39 H 1.09000 * 109.52344 * 301.35202 * 14 13 12 40 40 H 1.09003 * 109.58639 * 185.57370 * 15 14 13 41 41 H 1.09003 * 109.70285 * 65.22362 * 15 14 13 42 42 H 1.07997 * 120.06892 * 359.97438 * 20 19 17 43 43 H 1.07999 * 119.49711 * 179.75106 * 21 20 19 44 44 H 1.08996 * 109.47179 * 89.99609 * 23 22 21 45 45 H 1.08995 * 109.47655 * 209.99979 * 23 22 21 46 46 H 1.09002 * 109.46804 * 330.00117 * 23 22 21 47 47 H 1.07999 * 120.49054 * 359.97438 * 26 19 17 48 48 H 1.08999 * 109.58597 * 65.92555 * 27 16 15 49 49 H 1.08999 * 109.58358 * 186.35623 * 27 16 15 50 50 H 1.09000 * 109.50317 * 298.56960 * 28 13 12 51 51 H 1.09003 * 109.49457 * 58.66725 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1581 1.2273 -0.3842 5 6 1.5475 2.3350 0.4939 6 7 0.4456 2.2455 1.2082 7 14 2.3009 4.0083 0.1445 8 1 3.5282 3.8374 -0.6739 9 1 1.3240 4.8461 -0.5963 10 1 2.6497 4.6714 1.4267 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 3.2170 -3.0363 1.4411 14 6 3.5808 -3.4156 2.8784 15 6 4.3760 -4.7251 2.8710 16 7 3.5987 -5.7463 2.1558 17 6 3.3297 -6.9340 2.7333 18 8 3.6434 -7.1318 3.8901 19 6 2.6501 -8.0005 1.9557 20 6 2.9310 -8.1776 0.5838 21 6 2.3001 -9.1504 -0.1128 22 7 1.4035 -9.9720 0.4893 23 6 0.7449 -11.0185 -0.2964 24 6 1.1092 -9.8419 1.7963 25 8 0.3001 -10.5925 2.3164 26 6 1.7357 -8.8402 2.5651 27 6 3.1253 -5.4505 0.7967 28 6 2.3395 -4.1308 0.8295 29 1 -0.3634 0.0370 1.0270 30 1 -0.3633 0.8709 -0.5455 31 1 -0.3633 -0.9080 -0.4815 32 1 0.0246 3.0485 1.5530 33 1 3.1499 -1.1382 -0.5144 34 1 1.6084 -2.0282 -0.5148 35 1 1.5001 -1.8416 1.9555 36 1 3.0416 -0.9515 1.9559 37 1 4.1278 -2.9299 0.8520 38 1 2.6696 -3.5467 3.4619 39 1 4.1862 -2.6249 3.3217 40 1 4.5522 -5.0513 3.8960 41 1 5.3303 -4.5727 2.3669 42 1 3.6448 -7.5348 0.0903 43 1 2.5166 -9.2780 -1.1632 44 1 1.3388 -11.9315 -0.2555 45 1 -0.2464 -11.2112 0.1137 46 1 0.6525 -10.6914 -1.3320 47 1 1.5053 -8.7303 3.6145 48 1 3.9786 -5.3542 0.1254 49 1 2.4760 -6.2555 0.4526 50 1 1.4398 -4.2551 1.4323 51 1 2.0614 -3.8490 -0.1861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482504556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:46 Heat of formation + Delta-G solvation = -7.488327 kcal Electronic energy + Delta-G solvation = -30652.014062 eV Core-core repulsion = 26552.842564 eV Total energy + Delta-G solvation = -4099.171498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.85058 -40.34294 -37.99546 -37.31587 -35.81246 -35.07694 -33.81127 -31.49698 -31.06996 -30.40812 -28.97874 -28.20398 -25.93639 -25.55276 -24.53187 -23.77706 -23.26123 -22.26179 -20.80662 -19.94655 -19.44325 -18.24602 -17.73595 -17.36638 -16.68235 -16.57171 -16.24344 -15.75802 -15.40172 -14.85132 -14.73723 -14.54406 -14.26855 -14.02858 -13.89775 -13.71858 -13.65153 -13.31489 -13.17007 -13.05517 -12.88046 -12.64949 -12.32206 -12.22793 -12.02437 -11.87657 -11.35177 -11.25315 -10.94621 -10.88235 -10.76480 -10.63820 -10.61488 -10.49508 -10.30856 -10.24796 -10.01350 -9.92977 -9.78148 -9.62673 -8.84251 -8.52304 -8.41825 -6.70047 -5.71969 -3.17343 0.10181 1.22475 2.15138 2.43343 2.66856 3.23742 3.37334 3.44746 3.46642 3.92749 4.06264 4.19301 4.51150 4.57496 4.62063 4.72578 4.74500 4.81174 4.88101 4.92878 5.00578 5.11614 5.18268 5.25122 5.32794 5.42752 5.46008 5.51300 5.61852 5.67735 5.71180 5.76770 5.81609 5.89835 5.96677 6.12615 6.14311 6.30444 6.33129 6.37169 6.54754 6.55179 6.57828 6.76601 6.95793 7.10545 7.15214 7.35350 7.54221 7.72183 7.81756 7.82135 8.43351 9.25582 9.90040 10.39983 11.33843 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.002061 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.561179 B =13579.640253 C =14299.179995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.906 5.906 7 Si 0.901 3.099 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.153 3.847 12 C -0.131 4.131 13 C -0.085 4.085 14 C -0.129 4.129 15 C 0.111 3.889 16 N -0.597 5.597 17 C 0.555 3.445 18 O -0.529 6.529 19 C -0.026 4.026 20 C -0.218 4.218 21 C 0.131 3.869 22 N -0.497 5.497 23 C 0.057 3.943 24 C 0.514 3.486 25 O -0.543 6.543 26 C -0.176 4.176 27 C 0.091 3.909 28 C -0.131 4.131 29 H 0.025 0.975 30 H 0.042 0.958 31 H -0.004 1.004 32 H 0.251 0.749 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.157 0.843 43 H 0.169 0.831 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.159 0.841 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.066 0.934 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 -24.856 -6.086 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.327 5.327 3 C -0.382 4.382 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.026 3.974 12 C -0.171 4.171 13 C -0.105 4.105 14 C -0.167 4.167 15 C -0.010 4.010 16 N -0.330 5.330 17 C 0.342 3.658 18 O -0.406 6.406 19 C -0.032 4.032 20 C -0.241 4.241 21 C 0.005 3.995 22 N -0.209 5.209 23 C -0.084 4.084 24 C 0.315 3.685 25 O -0.424 6.424 26 C -0.199 4.199 27 C -0.031 4.031 28 C -0.169 4.169 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.174 0.826 43 H 0.187 0.813 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.106 0.894 47 H 0.177 0.823 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.085 0.915 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.455 -25.320 -5.102 26.399 hybrid contribution 0.377 1.202 -0.110 1.264 sum 5.832 -24.119 -5.213 25.355 Atomic orbital electron populations 1.20743 0.82882 0.95745 0.98801 1.43978 1.01773 1.00894 1.86013 1.19213 0.99081 0.85753 1.34158 0.91546 1.25046 0.98226 0.98570 0.97973 1.70076 1.21080 1.27206 1.36752 0.86233 0.78494 0.84583 0.77526 1.20336 1.21663 1.21795 1.20867 0.95368 0.87885 0.93252 1.22269 0.99419 0.94003 1.01450 1.21179 0.98693 0.95617 0.94989 1.21990 1.00707 0.95933 0.98078 1.21734 0.93652 0.87378 0.98271 1.48036 1.53629 1.14353 1.17003 1.18375 0.79129 0.82097 0.86209 1.90792 1.53035 1.80465 1.16291 1.20439 0.94558 0.94435 0.93817 1.20865 1.07009 1.02778 0.93460 1.21874 0.88971 0.89517 0.99165 1.45398 1.35392 1.28928 1.11141 1.22216 1.00230 0.90199 0.95780 1.17051 0.84275 0.86375 0.80810 1.90977 1.35773 1.46056 1.69618 1.22661 0.99340 0.95998 1.01934 1.22455 0.99117 0.99141 0.82418 1.22124 0.98722 0.93500 1.02517 0.95690 0.93926 0.98541 0.93866 0.94227 0.94676 0.92895 0.91860 0.91332 0.91568 0.90447 0.89092 0.91142 0.82552 0.81330 0.90399 0.88617 0.89359 0.82321 0.90785 0.88581 0.91519 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 9.03 59.85 0.54 4.54 16 2 N -0.60 -14.95 2.92 -181.12 -0.53 -15.48 16 3 C -0.25 -6.86 9.63 -15.06 -0.15 -7.00 16 4 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 5 C 0.00 0.00 5.05 -17.43 -0.09 -0.08 16 6 N -0.91 -26.47 10.87 55.49 0.60 -25.87 16 7 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 8 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.15 2.95 5.47 -4.04 -0.02 2.93 16 12 C -0.13 -2.27 5.01 -26.73 -0.13 -2.41 16 13 C -0.09 -1.07 2.15 -90.58 -0.19 -1.26 16 14 C -0.13 -1.54 5.36 -26.61 -0.14 -1.68 16 15 C 0.11 1.19 6.44 -3.71 -0.02 1.16 16 16 N -0.60 -6.20 2.97 -173.38 -0.51 -6.72 16 17 C 0.55 6.68 7.42 -12.05 -0.09 6.59 16 18 O -0.53 -8.25 16.30 5.39 0.09 -8.17 16 19 C -0.03 -0.25 5.28 -104.56 -0.55 -0.80 16 20 C -0.22 -1.32 7.35 -39.54 -0.29 -1.61 16 21 C 0.13 0.58 10.25 -16.90 -0.17 0.41 16 22 N -0.50 -3.50 2.98 -127.14 -0.38 -3.88 16 23 C 0.06 0.24 10.34 59.85 0.62 0.86 16 24 C 0.51 5.75 7.42 -15.31 -0.11 5.64 16 25 O -0.54 -7.94 16.62 4.91 0.08 -7.85 16 26 C -0.18 -1.98 9.64 -38.53 -0.37 -2.35 16 27 C 0.09 0.73 4.86 -3.48 -0.02 0.72 16 28 C -0.13 -1.38 5.16 -26.39 -0.14 -1.52 16 29 H 0.02 0.66 7.49 -51.93 -0.39 0.27 16 30 H 0.04 1.12 7.25 -51.93 -0.38 0.74 16 31 H 0.00 -0.08 7.87 -51.93 -0.41 -0.49 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 34 H 0.03 0.60 6.27 -51.93 -0.33 0.28 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.16 0.63 6.21 -52.49 -0.33 0.30 16 43 H 0.17 0.02 8.02 -52.49 -0.42 -0.40 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.55 7.37 -51.93 -0.38 0.17 16 46 H 0.09 0.09 8.00 -51.93 -0.42 -0.33 16 47 H 0.16 1.92 8.04 -52.49 -0.42 1.50 16 48 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 49 H 0.10 0.64 4.47 -51.93 -0.23 0.41 16 50 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.08 0.84 6.50 -51.93 -0.34 0.50 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -36.02 401.33 -9.13 -45.15 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -8.17 Total: -4.05 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.33 Total: 4.12 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.82 Total: -51.94 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.17 Total: -16.02 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.02 -9.13 -45.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482504556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.661 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds