Wall clock time and date at job start Wed Apr 1 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 119.99710 * 2 1 4 4 H 1.08003 * 120.00092 * 204.25599 * 3 2 1 5 5 C 1.38811 * 120.00458 * 24.25801 * 3 2 1 6 6 N 1.31620 * 119.99467 * 14.09323 * 5 3 2 7 7 Si 1.86799 * 120.00127 * 194.10061 * 5 3 2 8 8 H 1.48499 * 109.47301 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47194 * 119.99876 * 7 5 3 10 10 H 1.48503 * 109.46600 * 239.99465 * 7 5 3 11 11 C 1.46498 * 120.00034 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46992 * 269.99760 * 11 2 1 13 13 C 1.53003 * 109.46850 * 179.97438 * 12 11 2 14 14 C 1.53039 * 109.45654 * 175.00235 * 13 12 11 15 15 C 1.53198 * 109.31129 * 181.38622 * 14 13 12 16 16 N 1.46920 * 108.77615 * 305.36300 * 15 14 13 17 17 C 1.34774 * 120.63271 * 233.58708 * 16 15 14 18 18 O 1.21477 * 120.00074 * 5.50306 * 17 16 15 19 19 C 1.48457 * 120.00063 * 185.50513 * 17 16 15 20 20 C 1.41151 * 120.53847 * 36.48943 * 19 17 16 21 21 C 1.35267 * 119.86802 * 180.24962 * 20 19 17 22 22 N 1.35701 * 121.00104 * 359.47789 * 21 20 19 23 23 C 1.46497 * 119.44377 * 180.29671 * 22 21 20 24 24 C 1.34601 * 121.11736 * 0.27946 * 22 21 20 25 25 O 1.22009 * 119.96470 * 180.02562 * 24 22 21 26 26 C 1.38296 * 120.53787 * 216.22005 * 19 17 16 27 27 C 1.46931 * 118.73738 * 53.86103 * 16 15 14 28 28 C 1.53035 * 109.46162 * 295.06646 * 13 12 11 29 29 H 1.09000 * 109.47348 * 272.06403 * 1 2 3 30 30 H 1.08998 * 109.47124 * 32.06046 * 1 2 3 31 31 H 1.09006 * 109.46975 * 152.06286 * 1 2 3 32 32 H 0.97005 * 119.99714 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.47255 * 149.99519 * 11 2 1 34 34 H 1.09003 * 109.47264 * 30.00229 * 11 2 1 35 35 H 1.09001 * 109.47002 * 60.00505 * 12 11 2 36 36 H 1.08997 * 109.47116 * 300.00275 * 12 11 2 37 37 H 1.08996 * 109.46103 * 55.03190 * 13 12 11 38 38 H 1.08994 * 109.50362 * 61.43438 * 14 13 12 39 39 H 1.09000 * 109.52344 * 301.35202 * 14 13 12 40 40 H 1.09003 * 109.58639 * 185.57370 * 15 14 13 41 41 H 1.09003 * 109.70285 * 65.22362 * 15 14 13 42 42 H 1.07997 * 120.06892 * 359.97438 * 20 19 17 43 43 H 1.07999 * 119.49711 * 179.75106 * 21 20 19 44 44 H 1.08996 * 109.47179 * 89.99609 * 23 22 21 45 45 H 1.08995 * 109.47655 * 209.99979 * 23 22 21 46 46 H 1.09002 * 109.46804 * 330.00117 * 23 22 21 47 47 H 1.07999 * 120.49054 * 359.97438 * 26 19 17 48 48 H 1.08999 * 109.58597 * 65.92555 * 27 16 15 49 49 H 1.08999 * 109.58358 * 186.35623 * 27 16 15 50 50 H 1.09000 * 109.50317 * 298.56960 * 28 13 12 51 51 H 1.09003 * 109.49457 * 58.66725 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1581 1.2273 -0.3842 5 6 1.5475 2.3350 0.4939 6 7 0.4456 2.2455 1.2082 7 14 2.3009 4.0083 0.1445 8 1 3.5282 3.8374 -0.6739 9 1 1.3240 4.8461 -0.5963 10 1 2.6497 4.6714 1.4267 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 3.2170 -3.0363 1.4411 14 6 3.5808 -3.4156 2.8784 15 6 4.3760 -4.7251 2.8710 16 7 3.5987 -5.7463 2.1558 17 6 3.3297 -6.9340 2.7333 18 8 3.6434 -7.1318 3.8901 19 6 2.6501 -8.0005 1.9557 20 6 2.9310 -8.1776 0.5838 21 6 2.3001 -9.1504 -0.1128 22 7 1.4035 -9.9720 0.4893 23 6 0.7449 -11.0185 -0.2964 24 6 1.1092 -9.8419 1.7963 25 8 0.3001 -10.5925 2.3164 26 6 1.7357 -8.8402 2.5651 27 6 3.1253 -5.4505 0.7967 28 6 2.3395 -4.1308 0.8295 29 1 -0.3634 0.0370 1.0270 30 1 -0.3633 0.8709 -0.5455 31 1 -0.3633 -0.9080 -0.4815 32 1 0.0246 3.0485 1.5530 33 1 3.1499 -1.1382 -0.5144 34 1 1.6084 -2.0282 -0.5148 35 1 1.5001 -1.8416 1.9555 36 1 3.0416 -0.9515 1.9559 37 1 4.1278 -2.9299 0.8520 38 1 2.6696 -3.5467 3.4619 39 1 4.1862 -2.6249 3.3217 40 1 4.5522 -5.0513 3.8960 41 1 5.3303 -4.5727 2.3669 42 1 3.6448 -7.5348 0.0903 43 1 2.5166 -9.2780 -1.1632 44 1 1.3388 -11.9315 -0.2555 45 1 -0.2464 -11.2112 0.1137 46 1 0.6525 -10.6914 -1.3320 47 1 1.5053 -8.7303 3.6145 48 1 3.9786 -5.3542 0.1254 49 1 2.4760 -6.2555 0.4526 50 1 1.4398 -4.2551 1.4323 51 1 2.0614 -3.8490 -0.1861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482504556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:44 Heat of formation + Delta-G solvation = -30.641553 kcal Electronic energy + Delta-G solvation = -30653.018061 eV Core-core repulsion = 26552.842564 eV Total energy + Delta-G solvation = -4100.175497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.53341 -41.22151 -39.07943 -38.08821 -37.47072 -35.81730 -35.04396 -33.14040 -32.12969 -31.02459 -30.28503 -28.88527 -27.88836 -26.74537 -25.34908 -24.70713 -24.08882 -23.52199 -22.08605 -21.27500 -20.33061 -18.96702 -18.68255 -18.33609 -18.09363 -17.32197 -17.02687 -16.76898 -16.51901 -16.27018 -15.79180 -15.58864 -15.27224 -15.21198 -15.09381 -14.91649 -14.38488 -14.37066 -14.23305 -14.08848 -13.85926 -13.51860 -13.44691 -13.29142 -12.94440 -12.88580 -12.77815 -12.64323 -12.53349 -12.41681 -12.16593 -12.08385 -11.99722 -11.76215 -11.58625 -11.49418 -11.28314 -11.18555 -11.06703 -10.77219 -10.60903 -9.72451 -9.05132 -8.71493 -7.81432 -5.28699 -0.59969 0.63497 1.46263 1.47709 1.51303 1.57960 1.64131 1.84844 2.53039 2.53447 3.18903 3.32733 3.65768 3.69554 3.72886 3.83892 3.93346 4.02362 4.10084 4.13025 4.16492 4.38696 4.42453 4.44899 4.48878 4.52644 4.62745 4.67786 4.76738 4.81198 4.83647 4.84721 4.91159 4.91830 4.96286 5.00716 5.08231 5.11212 5.14415 5.27669 5.30863 5.34513 5.45339 5.50616 5.59940 5.63630 5.69382 5.75258 5.94500 6.26101 6.38025 6.82456 6.92516 7.18387 7.92899 8.36528 9.23052 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.002061 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.561179 B =13579.640253 C =14299.179995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.623 5.623 3 C -0.254 4.254 4 H 0.073 0.927 5 C -0.060 4.060 6 N -0.941 5.941 7 Si 0.965 3.035 8 H -0.262 1.262 9 H -0.293 1.293 10 H -0.296 1.296 11 C 0.150 3.850 12 C -0.118 4.118 13 C -0.074 4.074 14 C -0.125 4.125 15 C 0.116 3.884 16 N -0.592 5.592 17 C 0.548 3.452 18 O -0.577 6.577 19 C -0.010 4.010 20 C -0.228 4.228 21 C 0.165 3.835 22 N -0.489 5.489 23 C 0.050 3.950 24 C 0.504 3.496 25 O -0.598 6.598 26 C -0.225 4.225 27 C 0.091 3.909 28 C -0.129 4.129 29 H -0.006 1.006 30 H 0.015 0.985 31 H 0.034 0.966 32 H 0.245 0.755 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.029 0.971 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.191 0.809 43 H 0.234 0.766 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.135 0.865 47 H 0.127 0.873 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.044 0.956 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.386 -26.141 -10.865 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.346 5.346 3 C -0.385 4.385 4 H 0.090 0.910 5 C -0.254 4.254 6 N -0.589 5.589 7 Si 0.794 3.206 8 H -0.186 1.186 9 H -0.220 1.220 10 H -0.224 1.224 11 C 0.025 3.975 12 C -0.158 4.158 13 C -0.093 4.093 14 C -0.164 4.164 15 C -0.006 4.006 16 N -0.324 5.324 17 C 0.336 3.664 18 O -0.458 6.458 19 C -0.017 4.017 20 C -0.250 4.250 21 C 0.037 3.963 22 N -0.197 5.197 23 C -0.090 4.090 24 C 0.307 3.693 25 O -0.485 6.485 26 C -0.248 4.248 27 C -0.029 4.029 28 C -0.167 4.167 29 H 0.012 0.988 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.208 0.792 43 H 0.250 0.750 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.153 0.847 47 H 0.145 0.855 48 H 0.131 0.869 49 H 0.135 0.865 50 H 0.063 0.937 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.930 -26.619 -9.949 29.503 hybrid contribution -0.335 1.589 1.280 2.068 sum 7.595 -25.030 -8.669 27.556 Atomic orbital electron populations 1.20494 0.83296 0.96231 0.96909 1.44294 1.02014 1.02276 1.86009 1.19571 0.99209 0.86901 1.32821 0.90959 1.25827 0.99026 1.02064 0.98493 1.70249 1.22702 1.27541 1.38378 0.85228 0.78101 0.80270 0.77032 1.18616 1.21980 1.22367 1.21097 0.95772 0.86288 0.94320 1.22031 0.98226 0.95970 0.99556 1.21074 0.99178 0.93464 0.95608 1.21916 0.99872 0.96892 0.97685 1.21680 0.94501 0.86320 0.98133 1.48147 1.52789 1.13527 1.17902 1.18814 0.78709 0.83036 0.85815 1.90768 1.55077 1.81460 1.18456 1.20448 0.93087 0.92706 0.95490 1.21240 1.08152 1.04276 0.91341 1.22891 0.85510 0.86566 1.01312 1.45558 1.34956 1.29274 1.09940 1.22530 0.99015 0.90190 0.97292 1.17001 0.83977 0.85924 0.82362 1.90930 1.38378 1.48091 1.71093 1.22361 1.02550 0.98626 1.01265 1.22733 1.00659 0.98128 0.81407 1.22098 0.97841 0.94195 1.02544 0.98785 0.96640 0.94782 0.94546 0.93037 0.91754 0.95615 0.95162 0.89066 0.94049 0.90677 0.90863 0.88260 0.79162 0.74976 0.89138 0.90956 0.84658 0.85456 0.86896 0.86493 0.93704 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.65 9.03 127.77 1.15 9.81 16 2 N -0.62 -30.44 2.92 -726.93 -2.12 -32.56 16 3 C -0.25 -13.73 9.63 84.03 0.81 -12.92 16 4 H 0.07 3.75 7.86 -2.91 -0.02 3.72 16 5 C -0.06 -3.34 5.05 84.86 0.43 -2.91 16 6 N -0.94 -56.54 10.87 21.65 0.24 -56.31 16 7 Si 0.96 44.93 29.58 68.60 2.03 46.96 16 8 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 11 C 0.15 5.45 5.47 86.38 0.47 5.92 16 12 C -0.12 -4.02 5.01 30.59 0.15 -3.87 16 13 C -0.07 -1.68 2.15 -10.77 -0.02 -1.70 16 14 C -0.13 -2.94 5.36 30.67 0.16 -2.77 16 15 C 0.12 2.29 6.44 86.37 0.56 2.85 16 16 N -0.59 -10.98 2.97 -820.77 -2.43 -13.42 16 17 C 0.55 13.01 7.42 86.97 0.64 13.65 16 18 O -0.58 -19.03 16.30 -3.64 -0.06 -19.09 16 19 C -0.01 -0.18 5.28 -19.82 -0.10 -0.29 16 20 C -0.23 -1.66 7.35 22.30 0.16 -1.49 16 21 C 0.16 0.48 10.25 83.41 0.86 1.34 16 22 N -0.49 -5.45 2.98 -674.33 -2.01 -7.46 16 23 C 0.05 0.24 10.34 127.77 1.32 1.57 16 24 C 0.50 11.63 7.42 84.94 0.63 12.26 16 25 O -0.60 -18.98 16.62 -5.35 -0.09 -19.07 16 26 C -0.22 -5.45 9.64 22.95 0.22 -5.23 16 27 C 0.09 1.03 4.86 86.51 0.42 1.45 16 28 C -0.13 -2.29 5.16 30.82 0.16 -2.13 16 29 H -0.01 -0.34 7.49 -2.39 -0.02 -0.36 16 30 H 0.01 0.80 7.25 -2.39 -0.02 0.79 16 31 H 0.03 1.38 7.87 -2.38 -0.02 1.36 16 32 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 33 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 34 H 0.06 1.96 6.27 -2.39 -0.01 1.95 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.76 7.00 -2.39 -0.02 1.74 16 41 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.19 0.14 6.21 -2.91 -0.02 0.12 16 43 H 0.23 -2.16 8.02 -2.91 -0.02 -2.18 16 44 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.07 0.77 7.37 -2.39 -0.02 0.75 16 46 H 0.14 -0.58 8.00 -2.39 -0.02 -0.60 16 47 H 0.13 3.70 8.04 -2.91 -0.02 3.68 16 48 H 0.11 0.57 8.08 -2.39 -0.02 0.55 16 49 H 0.12 0.91 4.47 -2.39 -0.01 0.90 16 50 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.10 1.49 6.50 -2.39 -0.02 1.48 16 Total: -1.00 -88.05 401.33 4.50 -83.55 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 0.92 Total: 1.86 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 8.03 Total: 15.54 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -6.33 Total: -109.74 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.15 Total: -38.16 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -88.05 4.50 -83.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482504556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.909 kcal (2) G-P(sol) polarization free energy of solvation -88.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds