Wall clock time and date at job start Wed Apr 1 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 120.00027 * 2 1 4 4 C 1.52995 * 109.46860 * 269.99560 * 3 2 1 5 5 O 1.42902 * 109.47135 * 65.00306 * 4 3 2 6 6 C 1.42896 * 114.00169 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47421 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.46736 * 64.99667 * 7 6 5 9 9 C 1.36936 * 119.99917 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99798 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00082 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00083 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00075 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47099 * 89.99845 * 13 11 9 15 15 H 1.48503 * 109.46763 * 209.99858 * 13 11 9 16 16 H 1.48497 * 109.46906 * 329.99486 * 13 11 9 17 17 C 1.34774 * 120.00466 * 179.97438 * 2 1 3 18 18 O 1.21597 * 120.00717 * 184.86708 * 17 2 1 19 19 C 1.47527 * 119.99494 * 4.87712 * 17 2 1 20 20 C 1.39815 * 120.21231 * 141.09440 * 19 17 2 21 21 C 1.37393 * 120.12046 * 180.45046 * 20 19 17 22 22 C 1.39757 * 120.39519 * 359.71850 * 21 20 19 23 23 C 1.39311 * 119.29479 * 359.75451 * 22 21 20 24 24 C 1.37426 * 120.65095 * 0.32853 * 23 22 21 25 25 C 1.51616 * 107.87769 * 180.53058 * 23 22 21 26 26 C 1.54601 * 102.73015 * 16.01146 * 25 23 22 27 27 N 1.39460 * 129.74448 * 179.52630 * 22 21 20 28 28 C 1.46909 * 110.99479 * 283.71765 * 27 22 21 29 29 H 1.08994 * 109.47586 * 265.47136 * 1 2 3 30 30 H 1.09002 * 109.47020 * 25.47596 * 1 2 3 31 31 H 1.09002 * 109.46887 * 145.47186 * 1 2 3 32 32 H 1.09000 * 109.47086 * 29.99609 * 3 2 1 33 33 H 1.09003 * 109.47404 * 149.99444 * 3 2 1 34 34 H 1.09003 * 109.47266 * 184.99187 * 4 3 2 35 35 H 1.08999 * 109.47647 * 304.99916 * 4 3 2 36 36 H 1.08998 * 109.47537 * 299.99730 * 6 5 4 37 37 H 1.09001 * 109.47533 * 59.99764 * 6 5 4 38 38 H 1.08999 * 109.47391 * 184.99726 * 7 6 5 39 39 H 1.08999 * 109.46997 * 304.99986 * 7 6 5 40 40 H 0.97006 * 120.00529 * 0.02562 * 8 7 6 41 41 H 0.96993 * 120.00219 * 180.02562 * 12 11 9 42 42 H 1.08001 * 119.94229 * 0.13020 * 20 19 17 43 43 H 1.08003 * 119.80313 * 179.73651 * 21 20 19 44 44 H 1.08001 * 120.02327 * 179.85123 * 24 23 22 45 45 H 1.09005 * 110.75390 * 134.32387 * 25 23 22 46 46 H 1.08999 * 110.75637 * 257.51161 * 25 23 22 47 47 H 1.09008 * 110.77639 * 92.72174 * 26 25 23 48 48 H 1.08995 * 110.77754 * 215.95555 * 26 25 23 49 49 H 1.08993 * 109.47411 * 299.85798 * 28 27 22 50 50 H 1.09003 * 109.46701 * 59.86233 * 28 27 22 51 51 H 1.09004 * 109.46595 * 179.85203 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4425 5 8 1.2061 1.9935 -2.0814 6 6 1.3325 2.4174 -3.4402 7 6 -0.0565 2.6904 -4.0207 8 7 -0.6661 3.8215 -3.3170 9 6 -1.9183 4.2512 -3.6670 10 1 -2.4566 3.7560 -4.4617 11 6 -2.4957 5.3233 -3.0005 12 7 -3.6990 5.7367 -3.3373 13 14 -1.5643 6.1802 -1.6266 14 1 -0.7552 7.2889 -2.1936 15 1 -2.5301 6.7266 -0.6398 16 1 -0.6673 5.2062 -0.9543 17 6 2.1389 -1.1671 0.0005 18 8 3.3516 -1.1690 0.0899 19 6 1.4053 -2.4425 -0.1075 20 6 1.9241 -3.4897 -0.8750 21 6 1.2347 -4.6734 -0.9818 22 6 0.0148 -4.8433 -0.3214 23 6 -0.4931 -3.8012 0.4511 24 6 0.1897 -2.6137 0.5615 25 6 -1.8054 -4.2645 1.0527 26 6 -1.7459 -5.7974 0.8605 27 7 -0.8425 -5.9431 -0.3011 28 6 -1.6057 -6.0388 -1.5527 29 1 -0.3634 -0.0811 1.0244 30 1 -0.3633 0.9278 -0.4420 31 1 -0.3633 -0.8467 -0.5825 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 3.0732 2.6064 -1.4438 35 1 2.9643 0.9131 -1.9815 36 1 1.9298 3.3281 -3.4827 37 1 1.8212 1.6350 -4.0210 38 1 0.0329 2.9276 -5.0808 39 1 -0.6819 1.8062 -3.8977 40 1 -0.1825 4.2665 -2.6035 41 1 -4.1024 6.4860 -2.8719 42 1 2.8659 -3.3662 -1.3890 43 1 1.6382 -5.4775 -1.5795 44 1 -0.2146 -1.8116 1.1612 45 1 -1.8564 -4.0095 2.1113 46 1 -2.6502 -3.8370 0.5127 47 1 -1.3241 -6.2815 1.7415 48 1 -2.7348 -6.1978 0.6376 49 1 -2.2019 -5.1360 -1.6847 50 1 -0.9171 -6.1453 -2.3909 51 1 -2.2643 -6.9064 -1.5112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486499326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:00 Heat of formation + Delta-G solvation = -5.974036 kcal Electronic energy + Delta-G solvation = -30680.861358 eV Core-core repulsion = 26581.755525 eV Total energy + Delta-G solvation = -4099.105834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31762 -40.00607 -37.93681 -36.78963 -35.75007 -34.56574 -32.82932 -31.77007 -31.09364 -29.55883 -29.36464 -28.03725 -26.85154 -26.24373 -24.02528 -23.29685 -23.24249 -21.70630 -21.38231 -21.13656 -19.44632 -17.63587 -17.44816 -17.03311 -16.86062 -16.38075 -16.15031 -15.84800 -15.73427 -15.22589 -14.61929 -14.46554 -14.38186 -14.05758 -13.93728 -13.69865 -13.49578 -13.38201 -13.05682 -12.95404 -12.86548 -12.72617 -12.61346 -12.46504 -12.25144 -12.13466 -12.00168 -11.86409 -11.61571 -11.52090 -11.17492 -11.12508 -10.85782 -10.52851 -10.10673 -10.10214 -9.73195 -9.58519 -9.38721 -9.15429 -8.90019 -8.76878 -8.29076 -7.20393 -5.75285 -3.09827 0.61489 1.05760 2.52826 2.84815 3.23370 3.39067 3.43550 3.43685 3.46359 3.87309 4.10744 4.27712 4.43820 4.56085 4.61478 4.61997 4.77433 4.96126 5.00010 5.04040 5.07497 5.08697 5.15579 5.20539 5.24292 5.26791 5.33345 5.39069 5.41116 5.45760 5.50396 5.52008 5.55893 5.58007 5.67825 5.72965 5.79451 5.86145 5.92225 5.99061 6.00857 6.06650 6.26434 6.39110 6.44943 6.50868 6.64669 6.82538 7.22319 7.44738 8.00361 8.01038 8.43828 9.23928 9.96337 10.17408 11.43263 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.002569 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.496987 B =10897.977543 C =12036.858978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.118 3.882 4 C 0.044 3.956 5 O -0.374 6.374 6 C 0.055 3.945 7 C 0.160 3.840 8 N -0.751 5.751 9 C -0.242 4.242 10 H 0.089 0.911 11 C 0.003 3.997 12 N -0.936 5.936 13 Si 0.884 3.116 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.274 1.274 17 C 0.562 3.438 18 O -0.543 6.543 19 C -0.140 4.140 20 C -0.047 4.047 21 C -0.119 4.119 22 C 0.111 3.889 23 C -0.149 4.149 24 C -0.059 4.059 25 C -0.110 4.110 26 C 0.049 3.951 27 N -0.499 5.499 28 C 0.026 3.974 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.033 0.967 40 H 0.364 0.636 41 H 0.259 0.741 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.038 0.962 50 H 0.074 0.926 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 -23.821 8.803 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.330 5.330 3 C -0.004 4.004 4 C -0.034 4.034 5 O -0.293 6.293 6 C -0.022 4.022 7 C 0.033 3.967 8 N -0.397 5.397 9 C -0.372 4.372 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.584 5.584 13 Si 0.714 3.286 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.200 1.200 17 C 0.351 3.649 18 O -0.421 6.421 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.139 4.139 22 C 0.014 3.986 23 C -0.152 4.152 24 C -0.077 4.077 25 C -0.148 4.148 26 C -0.078 4.078 27 N -0.216 5.216 28 C -0.120 4.120 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.197 0.803 41 H 0.069 0.931 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.154 0.846 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.106 0.894 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.051 -24.336 8.841 27.428 hybrid contribution 0.275 1.451 0.732 1.648 sum 9.325 -22.885 9.573 26.501 Atomic orbital electron populations 1.22216 0.78613 1.05250 1.00918 1.47646 1.07636 1.05390 1.72345 1.21586 0.98484 0.84681 0.95691 1.22889 0.87475 0.99188 0.93879 1.87985 1.28030 1.87544 1.25761 1.22838 0.99286 0.97648 0.82432 1.20661 0.90022 0.91403 0.94655 1.42633 1.18390 1.36471 1.42223 1.19070 0.91183 1.11374 1.15534 0.89319 1.24659 0.96396 0.98727 0.99467 1.69705 1.15060 1.29391 1.44292 0.86538 0.79313 0.79802 0.82938 1.21233 1.21819 1.19980 1.18254 0.86908 0.83563 0.76183 1.90773 1.13600 1.87414 1.50349 1.19714 0.96531 0.95051 1.03017 1.20921 0.98827 0.90973 0.95958 1.20396 0.93286 0.98044 1.02144 1.19724 0.93806 0.88814 0.96246 1.20899 0.97398 0.94058 1.02800 1.20858 0.92620 0.96507 0.97757 1.21695 0.94680 0.96261 1.02163 1.23195 0.96471 0.94717 0.93409 1.59937 1.17960 1.39119 1.04541 1.22508 0.97635 1.01434 0.90406 0.92718 0.88860 0.90705 0.89235 0.88356 0.92528 0.93322 0.93455 0.93516 0.94195 0.94888 0.80338 0.93121 0.84662 0.85176 0.84640 0.89299 0.89660 0.89141 0.89407 0.94350 0.90745 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 8.66 59.84 0.52 1.34 16 2 N -0.60 -7.54 2.84 -182.81 -0.52 -8.05 16 3 C 0.12 1.44 5.83 -4.04 -0.02 1.42 16 4 C 0.04 0.58 6.28 37.16 0.23 0.81 16 5 O -0.37 -6.05 9.20 -35.23 -0.32 -6.37 16 6 C 0.05 0.87 6.07 37.16 0.23 1.09 16 7 C 0.16 3.13 6.65 -4.04 -0.03 3.10 16 8 N -0.75 -18.15 5.35 -59.91 -0.32 -18.47 16 9 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 10 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 12 N -0.94 -29.56 13.97 55.49 0.78 -28.78 16 13 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.27 -6.52 6.52 56.52 0.37 -6.15 16 17 C 0.56 7.66 7.35 -12.47 -0.09 7.57 16 18 O -0.54 -8.83 16.46 5.28 0.09 -8.74 16 19 C -0.14 -1.66 5.24 -104.94 -0.55 -2.20 16 20 C -0.05 -0.52 9.61 -39.30 -0.38 -0.90 16 21 C -0.12 -1.16 10.05 -39.32 -0.40 -1.56 16 22 C 0.11 1.09 5.57 -83.42 -0.46 0.62 16 23 C -0.15 -1.43 6.21 -104.07 -0.65 -2.08 16 24 C -0.06 -0.60 7.54 -39.29 -0.30 -0.90 16 25 C -0.11 -0.77 6.98 -26.59 -0.19 -0.96 16 26 C 0.05 0.31 6.99 -2.45 -0.02 0.30 16 27 N -0.50 -4.18 5.31 -176.82 -0.94 -5.11 16 28 C 0.03 0.17 9.28 60.07 0.56 0.73 16 29 H 0.05 0.51 6.88 -51.93 -0.36 0.15 16 30 H 0.09 1.26 7.21 -51.93 -0.37 0.88 16 31 H 0.07 0.83 5.82 -51.93 -0.30 0.53 16 32 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 33 H 0.10 1.15 7.36 -51.93 -0.38 0.76 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.36 8.69 5.53 -40.82 -0.23 8.46 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 42 H 0.14 1.40 8.05 -52.49 -0.42 0.97 16 43 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.14 1.22 5.30 -52.49 -0.28 0.94 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.55 8.14 -51.92 -0.42 0.12 16 48 H 0.09 0.40 7.77 -51.93 -0.40 0.00 16 49 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 LS Contribution 409.97 15.07 6.18 6.18 Total: -1.00 -35.11 409.97 -9.82 -44.93 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.25 Total: 5.58 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.79 Total: 1.32 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -1.00 Total: -60.42 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.24 Total: -15.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.11 -9.82 -44.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486499326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.954 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds