Wall clock time and date at job start Wed Apr 1 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 120.00027 * 2 1 4 4 C 1.52995 * 109.46860 * 269.99560 * 3 2 1 5 5 O 1.42902 * 109.47135 * 65.00306 * 4 3 2 6 6 C 1.42896 * 114.00169 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47421 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.46736 * 64.99667 * 7 6 5 9 9 C 1.36936 * 119.99917 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99798 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00082 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00083 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00075 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47099 * 89.99845 * 13 11 9 15 15 H 1.48503 * 109.46763 * 209.99858 * 13 11 9 16 16 H 1.48497 * 109.46906 * 329.99486 * 13 11 9 17 17 C 1.34774 * 120.00466 * 179.97438 * 2 1 3 18 18 O 1.21597 * 120.00717 * 184.86708 * 17 2 1 19 19 C 1.47527 * 119.99494 * 4.87712 * 17 2 1 20 20 C 1.39815 * 120.21231 * 141.09440 * 19 17 2 21 21 C 1.37393 * 120.12046 * 180.45046 * 20 19 17 22 22 C 1.39757 * 120.39519 * 359.71850 * 21 20 19 23 23 C 1.39311 * 119.29479 * 359.75451 * 22 21 20 24 24 C 1.37426 * 120.65095 * 0.32853 * 23 22 21 25 25 C 1.51616 * 107.87769 * 180.53058 * 23 22 21 26 26 C 1.54601 * 102.73015 * 16.01146 * 25 23 22 27 27 N 1.39460 * 129.74448 * 179.52630 * 22 21 20 28 28 C 1.46909 * 110.99479 * 283.71765 * 27 22 21 29 29 H 1.08994 * 109.47586 * 265.47136 * 1 2 3 30 30 H 1.09002 * 109.47020 * 25.47596 * 1 2 3 31 31 H 1.09002 * 109.46887 * 145.47186 * 1 2 3 32 32 H 1.09000 * 109.47086 * 29.99609 * 3 2 1 33 33 H 1.09003 * 109.47404 * 149.99444 * 3 2 1 34 34 H 1.09003 * 109.47266 * 184.99187 * 4 3 2 35 35 H 1.08999 * 109.47647 * 304.99916 * 4 3 2 36 36 H 1.08998 * 109.47537 * 299.99730 * 6 5 4 37 37 H 1.09001 * 109.47533 * 59.99764 * 6 5 4 38 38 H 1.08999 * 109.47391 * 184.99726 * 7 6 5 39 39 H 1.08999 * 109.46997 * 304.99986 * 7 6 5 40 40 H 0.97006 * 120.00529 * 0.02562 * 8 7 6 41 41 H 0.96993 * 120.00219 * 180.02562 * 12 11 9 42 42 H 1.08001 * 119.94229 * 0.13020 * 20 19 17 43 43 H 1.08003 * 119.80313 * 179.73651 * 21 20 19 44 44 H 1.08001 * 120.02327 * 179.85123 * 24 23 22 45 45 H 1.09005 * 110.75390 * 134.32387 * 25 23 22 46 46 H 1.08999 * 110.75637 * 257.51161 * 25 23 22 47 47 H 1.09008 * 110.77639 * 92.72174 * 26 25 23 48 48 H 1.08995 * 110.77754 * 215.95555 * 26 25 23 49 49 H 1.08993 * 109.47411 * 299.85798 * 28 27 22 50 50 H 1.09003 * 109.46701 * 59.86233 * 28 27 22 51 51 H 1.09004 * 109.46595 * 179.85203 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4425 5 8 1.2061 1.9935 -2.0814 6 6 1.3325 2.4174 -3.4402 7 6 -0.0565 2.6904 -4.0207 8 7 -0.6661 3.8215 -3.3170 9 6 -1.9183 4.2512 -3.6670 10 1 -2.4566 3.7560 -4.4617 11 6 -2.4957 5.3233 -3.0005 12 7 -3.6990 5.7367 -3.3373 13 14 -1.5643 6.1802 -1.6266 14 1 -0.7552 7.2889 -2.1936 15 1 -2.5301 6.7266 -0.6398 16 1 -0.6673 5.2062 -0.9543 17 6 2.1389 -1.1671 0.0005 18 8 3.3516 -1.1690 0.0899 19 6 1.4053 -2.4425 -0.1075 20 6 1.9241 -3.4897 -0.8750 21 6 1.2347 -4.6734 -0.9818 22 6 0.0148 -4.8433 -0.3214 23 6 -0.4931 -3.8012 0.4511 24 6 0.1897 -2.6137 0.5615 25 6 -1.8054 -4.2645 1.0527 26 6 -1.7459 -5.7974 0.8605 27 7 -0.8425 -5.9431 -0.3011 28 6 -1.6057 -6.0388 -1.5527 29 1 -0.3634 -0.0811 1.0244 30 1 -0.3633 0.9278 -0.4420 31 1 -0.3633 -0.8467 -0.5825 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 3.0732 2.6064 -1.4438 35 1 2.9643 0.9131 -1.9815 36 1 1.9298 3.3281 -3.4827 37 1 1.8212 1.6350 -4.0210 38 1 0.0329 2.9276 -5.0808 39 1 -0.6819 1.8062 -3.8977 40 1 -0.1825 4.2665 -2.6035 41 1 -4.1024 6.4860 -2.8719 42 1 2.8659 -3.3662 -1.3890 43 1 1.6382 -5.4775 -1.5795 44 1 -0.2146 -1.8116 1.1612 45 1 -1.8564 -4.0095 2.1113 46 1 -2.6502 -3.8370 0.5127 47 1 -1.3241 -6.2815 1.7415 48 1 -2.7348 -6.1978 0.6376 49 1 -2.2019 -5.1360 -1.6847 50 1 -0.9171 -6.1453 -2.3909 51 1 -2.2643 -6.9064 -1.5112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486499326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:59 Heat of formation + Delta-G solvation = -29.509664 kcal Electronic energy + Delta-G solvation = -30681.881940 eV Core-core repulsion = 26581.755525 eV Total energy + Delta-G solvation = -4100.126415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.04980 -40.92446 -39.13615 -37.57354 -36.96035 -36.25707 -33.70588 -33.45522 -32.17786 -30.64735 -30.03064 -29.49329 -27.76063 -26.91287 -25.24650 -24.81083 -24.03786 -22.83658 -22.53907 -22.01608 -20.36493 -19.74783 -18.41542 -17.86466 -17.61651 -17.47392 -17.14904 -16.88375 -16.61940 -16.36769 -16.00935 -15.86231 -15.23315 -15.11501 -15.06514 -14.70727 -14.60062 -14.39506 -14.23499 -14.02786 -13.93009 -13.74533 -13.66257 -13.42261 -13.28281 -13.03684 -12.98321 -12.81935 -12.78524 -12.71980 -12.48655 -12.14478 -12.12112 -11.90970 -11.87054 -11.73221 -11.11366 -11.00733 -10.56051 -10.45741 -9.91139 -9.76243 -9.28705 -8.98127 -8.01557 -5.34425 -0.19654 0.30265 1.39664 1.42322 1.51009 1.56601 1.92058 2.50230 2.58057 2.65961 2.72719 3.30474 3.36840 3.56667 3.66569 3.76497 3.93463 4.01604 4.05613 4.09402 4.19087 4.22715 4.27555 4.29190 4.39016 4.42445 4.44270 4.49830 4.50570 4.53823 4.57364 4.59083 4.72932 4.75706 4.81406 4.91991 4.93463 4.96834 5.00038 5.02994 5.09596 5.15958 5.25361 5.31216 5.43162 5.55615 5.75581 5.85539 6.14022 6.18953 6.22940 6.32516 6.99381 7.09265 7.85239 8.05922 9.20054 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.002569 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.496987 B =10897.977543 C =12036.858978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.598 5.598 3 C 0.116 3.884 4 C 0.045 3.955 5 O -0.394 6.394 6 C 0.063 3.937 7 C 0.155 3.845 8 N -0.753 5.753 9 C -0.234 4.234 10 H 0.056 0.944 11 C -0.064 4.064 12 N -0.985 5.985 13 Si 0.956 3.044 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.250 1.250 17 C 0.561 3.439 18 O -0.577 6.577 19 C -0.160 4.160 20 C -0.056 4.056 21 C -0.124 4.124 22 C 0.107 3.893 23 C -0.158 4.158 24 C -0.059 4.059 25 C -0.107 4.107 26 C 0.048 3.952 27 N -0.509 5.509 28 C 0.025 3.975 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.025 0.975 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.134 0.866 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.280 -24.786 10.144 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C -0.007 4.007 4 C -0.032 4.032 5 O -0.313 6.313 6 C -0.013 4.013 7 C 0.029 3.971 8 N -0.399 5.399 9 C -0.365 4.365 10 H 0.074 0.926 11 C -0.256 4.256 12 N -0.636 5.636 13 Si 0.783 3.217 14 H -0.206 1.206 15 H -0.222 1.222 16 H -0.175 1.175 17 C 0.351 3.649 18 O -0.458 6.458 19 C -0.164 4.164 20 C -0.076 4.076 21 C -0.143 4.143 22 C 0.009 3.991 23 C -0.160 4.160 24 C -0.078 4.078 25 C -0.145 4.145 26 C -0.078 4.078 27 N -0.225 5.225 28 C -0.120 4.120 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.201 0.799 41 H 0.067 0.933 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.120 0.880 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.127 0.873 49 H 0.052 0.948 50 H 0.090 0.910 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.768 -25.335 10.172 28.996 hybrid contribution 0.009 1.612 0.230 1.628 sum 9.777 -23.723 10.401 27.687 Atomic orbital electron populations 1.22226 0.77921 1.04151 1.02238 1.47733 1.08094 1.05358 1.71680 1.21659 0.98926 0.84709 0.95357 1.22984 0.86518 0.99834 0.93887 1.87953 1.29804 1.87725 1.25842 1.22695 0.96723 0.99092 0.82799 1.20825 0.91941 0.89416 0.94938 1.42625 1.16990 1.37619 1.42648 1.19052 0.92548 1.10705 1.14150 0.92622 1.25503 0.97451 0.99943 1.02675 1.69887 1.17192 1.30338 1.46165 0.85382 0.78064 0.78837 0.79385 1.20568 1.22212 1.17451 1.18522 0.86586 0.84286 0.75508 1.90742 1.14989 1.87927 1.52172 1.19701 0.97477 0.94619 1.04559 1.20993 0.99029 0.91362 0.96209 1.20548 0.93444 0.98001 1.02353 1.19975 0.93927 0.89421 0.95738 1.21242 0.98406 0.93677 1.02714 1.20943 0.92093 0.97212 0.97540 1.21764 0.93343 0.96569 1.02825 1.23328 0.97228 0.94410 0.92873 1.59973 1.18554 1.38300 1.05722 1.22563 0.97632 1.02064 0.89717 0.90364 0.90828 0.90595 0.88415 0.87893 0.90751 0.93771 0.92396 0.90946 0.93521 0.95729 0.79898 0.93340 0.84847 0.83779 0.83619 0.88017 0.89093 0.88789 0.87283 0.94778 0.90953 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 8.66 127.77 1.11 2.77 16 2 N -0.60 -14.50 2.84 -850.55 -2.41 -16.91 16 3 C 0.12 2.66 5.83 86.38 0.50 3.16 16 4 C 0.05 1.10 6.28 71.98 0.45 1.56 16 5 O -0.39 -11.95 9.20 -148.98 -1.37 -13.32 16 6 C 0.06 1.86 6.07 71.98 0.44 2.30 16 7 C 0.15 5.88 6.65 86.38 0.57 6.45 16 8 N -0.75 -35.55 5.35 -343.45 -1.84 -37.39 16 9 C -0.23 -13.46 10.47 84.03 0.88 -12.58 16 10 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 11 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 12 N -0.99 -63.36 13.97 21.65 0.30 -63.06 16 13 Si 0.96 45.58 27.74 68.60 1.90 47.48 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 16 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 17 C 0.56 15.16 7.35 86.69 0.64 15.80 16 18 O -0.58 -18.89 16.46 -4.02 -0.07 -18.95 16 19 C -0.16 -3.76 5.24 -20.07 -0.11 -3.86 16 20 C -0.06 -1.24 9.61 22.45 0.22 -1.02 16 21 C -0.12 -2.35 10.05 22.44 0.23 -2.12 16 22 C 0.11 1.97 5.57 38.55 0.21 2.18 16 23 C -0.16 -2.81 6.21 -19.51 -0.12 -2.93 16 24 C -0.06 -1.16 7.54 22.46 0.17 -0.99 16 25 C -0.11 -1.27 6.98 30.69 0.21 -1.05 16 26 C 0.05 0.50 6.99 86.66 0.61 1.10 16 27 N -0.51 -7.57 5.31 -713.35 -3.79 -11.36 16 28 C 0.03 0.30 9.28 127.69 1.19 1.48 16 29 H 0.08 1.30 6.88 -2.39 -0.02 1.29 16 30 H 0.07 1.91 7.21 -2.39 -0.02 1.90 16 31 H 0.08 1.62 5.82 -2.39 -0.01 1.61 16 32 H 0.10 2.07 8.07 -2.39 -0.02 2.05 16 33 H 0.10 2.28 7.36 -2.39 -0.02 2.26 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.37 16.72 5.53 -92.70 -0.51 16.20 16 41 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.13 2.84 8.05 -2.91 -0.02 2.82 16 43 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 44 H 0.15 2.41 5.30 -2.91 -0.02 2.40 16 45 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.11 0.67 7.77 -2.39 -0.02 0.65 16 49 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.10 0.74 8.11 -2.39 -0.02 0.72 16 Total: -1.00 -76.06 409.97 0.75 -75.31 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.36 Total: 29.31 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 7.66 Total: 8.89 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -7.73 Total: -128.72 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.44 Total: -32.27 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.48 kcal Total: -76.06 0.75 -75.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486499326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.798 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds