Wall clock time and date at job start Wed Apr 1 2020 04:53:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 O 1.42895 * 109.46899 * 2 1
4 4 C 1.35424 * 116.99998 * 179.97438 * 3 2 1
5 5 N 1.32240 * 119.80171 * 0.02828 * 4 3 2
6 6 C 1.31878 * 121.80072 * 179.97438 * 5 4 3
7 7 C 1.38350 * 121.19179 * 0.02562 * 6 5 4
8 8 C 1.38338 * 119.45283 * 359.69687 * 7 6 5
9 9 C 1.50698 * 120.82575 * 180.29711 * 8 7 6
10 10 C 1.39993 * 118.34996 * 0.53910 * 8 7 6
11 11 C 1.47523 * 120.59601 * 179.75555 * 10 8 7
12 12 O 1.21588 * 120.00336 * 269.44984 * 11 10 8
13 13 N 1.34784 * 119.99748 * 89.72373 * 11 10 8
14 14 C 1.46499 * 119.99893 * 179.72590 * 13 11 10
15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11
16 16 C 1.53000 * 109.46990 * 180.02562 * 15 14 13
17 17 H 1.09006 * 110.64456 * 54.29179 * 16 15 14
18 18 C 1.55157 * 110.72393 * 177.43947 * 16 15 14
19 19 C 1.55119 * 101.48924 * 153.73099 * 18 16 15
20 20 N 1.47424 * 104.94264 * 323.22175 * 19 18 16
21 21 C 1.36933 * 125.64823 * 203.96581 * 20 19 18
22 22 H 1.08003 * 120.00052 * 180.02562 * 21 20 19
23 23 C 1.38810 * 120.00212 * 0.04386 * 21 20 19
24 24 N 1.31621 * 119.99778 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00129 * 179.97438 * 23 21 20
26 26 H 1.48502 * 109.46904 * 90.00021 * 25 23 21
27 27 H 1.48498 * 109.46908 * 209.99969 * 25 23 21
28 28 H 1.48497 * 109.47024 * 329.99881 * 25 23 21
29 29 C 1.47028 * 108.70206 * 24.00479 * 20 19 18
30 30 H 1.08992 * 109.47057 * 59.99853 * 1 2 3
31 31 H 1.08999 * 109.46968 * 180.02562 * 1 2 3
32 32 H 1.09002 * 109.46930 * 299.99565 * 1 2 3
33 33 H 1.09002 * 109.46930 * 240.00435 * 2 1 3
34 34 H 1.08992 * 109.47057 * 120.00147 * 2 1 3
35 35 H 1.08001 * 119.40210 * 179.97438 * 6 5 4
36 36 H 1.07999 * 120.27542 * 179.97438 * 7 6 5
37 37 H 1.09005 * 109.47087 * 270.25406 * 9 8 7
38 38 H 1.08997 * 109.47442 * 30.24490 * 9 8 7
39 39 H 1.08997 * 109.47710 * 150.25032 * 9 8 7
40 40 H 0.97005 * 119.99846 * 359.72378 * 13 11 10
41 41 H 1.08998 * 109.47134 * 299.99552 * 14 13 11
42 42 H 1.08994 * 109.47397 * 59.99843 * 14 13 11
43 43 H 1.09000 * 109.47195 * 299.99415 * 15 14 13
44 44 H 1.08994 * 109.47584 * 59.99634 * 15 14 13
45 45 H 1.09000 * 111.00353 * 271.94261 * 18 16 15
46 46 H 1.09007 * 111.00295 * 35.78441 * 18 16 15
47 47 H 1.08995 * 110.41963 * 204.29599 * 19 18 16
48 48 H 1.08997 * 110.29947 * 82.08912 * 19 18 16
49 49 H 0.97003 * 119.99782 * 180.02562 * 24 23 21
50 50 H 1.08998 * 109.87970 * 239.52453 * 29 20 19
51 51 H 1.08999 * 110.00768 * 118.42882 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.3489 1.5247 0.0005
5 7 4.1509 0.4733 0.0005
6 6 5.4635 0.6004 0.0005
7 6 6.0626 1.8475 0.0011
8 6 5.2714 2.9822 -0.0047
9 6 5.8912 4.3558 -0.0109
10 6 3.8806 2.8229 0.0006
11 6 2.9900 3.9990 0.0003
12 8 2.6186 4.4807 1.0531
13 7 2.5837 4.5362 -1.1672
14 6 1.6945 5.7005 -1.1675
15 6 1.3878 6.1074 -2.6102
16 6 0.4597 7.3238 -2.6107
17 1 0.8840 8.1311 -2.0137
18 6 0.1809 7.8010 -4.0604
19 6 -1.2003 8.4884 -3.8992
20 7 -1.9242 7.6612 -2.9168
21 6 -3.2853 7.5783 -2.7919
22 1 -3.7205 6.9407 -2.0365
23 6 -4.1059 8.3135 -3.6363
24 7 -3.5756 9.0899 -4.5574
25 14 -5.9627 8.1998 -3.4664
26 1 -6.4366 9.2343 -2.5121
27 1 -6.5954 8.4216 -4.7914
28 1 -6.3319 6.8534 -2.9606
29 6 -0.9426 6.9407 -2.0927
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8899
35 1 6.0820 -0.2850 0.0008
36 1 7.1391 1.9344 0.0015
37 1 6.0444 4.6900 1.0153
38 1 6.8501 4.3194 -0.5279
39 1 5.2278 5.0516 -0.5244
40 1 2.8800 4.1519 -2.0071
41 1 0.7655 5.4484 -0.6563
42 1 2.1800 6.5287 -0.6514
43 1 2.3166 6.3595 -3.1219
44 1 0.9021 5.2791 -3.1260
45 1 0.9383 8.5122 -4.3901
46 1 0.1174 6.9550 -4.7449
47 1 -1.7325 8.5005 -4.8503
48 1 -1.0758 9.5034 -3.5220
49 1 -4.1490 9.6039 -5.1473
50 1 -1.0934 5.8657 -2.1917
51 1 -1.0451 7.2347 -1.0482
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001494035554.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:53:21
Heat of formation + Delta-G solvation = -25.857834 kcal
Electronic energy + Delta-G solvation = -30381.348922 eV
Core-core repulsion = 26281.380862 eV
Total energy + Delta-G solvation = -4099.968060 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.29031 -39.37846 -38.45576 -37.74752 -35.16856 -34.29353 -33.01434 -32.43619
-30.95363 -30.24912 -28.95520 -28.46650 -26.61385 -25.03073 -24.17410 -23.87351
-22.34203 -21.92295 -20.82385 -20.06473 -19.34231 -18.40348 -17.84377 -17.42445
-16.88771 -16.66133 -15.97392 -15.67026 -15.39511 -14.83132 -14.64541 -14.47015
-14.33451 -14.15323 -13.65162 -13.56746 -13.46956 -13.25489 -13.07121 -12.81913
-12.52312 -12.49518 -12.32072 -12.23343 -11.88491 -11.79574 -11.66912 -11.55859
-11.05985 -11.04335 -10.87410 -10.73973 -10.54651 -10.12766 -10.06836 -9.95357
-9.90593 -9.76006 -9.69220 -9.42193 -9.09056 -8.89018 -8.60503 -6.77453
-5.60888 -3.01973 0.53095 0.83462 2.44665 2.62657 3.03623 3.29826
3.42872 3.47669 3.49651 3.88622 4.23266 4.47495 4.52483 4.53614
4.67031 4.74856 4.79952 4.95060 5.03546 5.08532 5.10517 5.13137
5.15528 5.33111 5.38000 5.42421 5.51979 5.55944 5.59542 5.63404
5.66434 5.77175 5.82799 5.84656 5.92859 6.00986 6.05141 6.21208
6.26122 6.41014 6.43202 6.64140 6.68085 6.81850 6.88479 7.02630
7.35838 7.41671 7.57113 7.68177 7.90411 8.09767 8.41531 9.27402
9.88490 10.54041 11.43089
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013863 B = 0.002237 C = 0.002003
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.317578 B =12515.410957 C =13976.941993
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.068 3.932
3 O -0.297 6.297
4 C 0.361 3.639
5 N -0.544 5.544
6 C 0.158 3.842
7 C -0.217 4.217
8 C 0.027 3.973
9 C -0.124 4.124
10 C -0.203 4.203
11 C 0.577 3.423
12 O -0.527 6.527
13 N -0.718 5.718
14 C 0.117 3.883
15 C -0.116 4.116
16 C -0.097 4.097
17 H 0.072 0.928
18 C -0.139 4.139
19 C 0.151 3.849
20 N -0.605 5.605
21 C -0.219 4.219
22 H 0.077 0.923
23 C -0.014 4.014
24 N -0.924 5.924
25 Si 0.914 3.086
26 H -0.289 1.289
27 H -0.291 1.291
28 H -0.282 1.282
29 C 0.140 3.860
30 H 0.068 0.932
31 H 0.080 0.920
32 H 0.067 0.933
33 H 0.068 0.932
34 H 0.067 0.933
35 H 0.164 0.836
36 H 0.143 0.857
37 H 0.087 0.913
38 H 0.081 0.919
39 H 0.075 0.925
40 H 0.400 0.600
41 H 0.074 0.926
42 H 0.068 0.932
43 H 0.065 0.935
44 H 0.070 0.930
45 H 0.056 0.944
46 H 0.059 0.941
47 H 0.105 0.895
48 H 0.010 0.990
49 H 0.251 0.749
50 H 0.022 0.978
51 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.763 -17.280 5.980 29.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.007 4.007
3 O -0.203 6.203
4 C 0.181 3.819
5 N -0.268 5.268
6 C 0.002 3.998
7 C -0.237 4.237
8 C 0.019 3.981
9 C -0.180 4.180
10 C -0.209 4.209
11 C 0.361 3.639
12 O -0.403 6.403
13 N -0.369 5.369
14 C -0.006 4.006
15 C -0.154 4.154
16 C -0.117 4.117
17 H 0.090 0.910
18 C -0.177 4.177
19 C 0.026 3.974
20 N -0.331 5.331
21 C -0.348 4.348
22 H 0.094 0.906
23 C -0.209 4.209
24 N -0.573 5.573
25 Si 0.744 3.256
26 H -0.217 1.217
27 H -0.217 1.217
28 H -0.207 1.207
29 C 0.014 3.986
30 H 0.087 0.913
31 H 0.099 0.901
32 H 0.086 0.914
33 H 0.086 0.914
34 H 0.085 0.915
35 H 0.181 0.819
36 H 0.161 0.839
37 H 0.105 0.895
38 H 0.100 0.900
39 H 0.094 0.906
40 H 0.233 0.767
41 H 0.092 0.908
42 H 0.087 0.913
43 H 0.083 0.917
44 H 0.088 0.912
45 H 0.075 0.925
46 H 0.078 0.922
47 H 0.123 0.877
48 H 0.028 0.972
49 H 0.062 0.938
50 H 0.040 0.960
51 H 0.037 0.963
Dipole moment (debyes) X Y Z Total
from point charges 21.630 -17.470 6.653 28.588
hybrid contribution -0.373 0.280 -0.209 0.511
sum 21.256 -17.190 6.444 28.087
Atomic orbital electron populations
1.21846 0.92552 1.03010 1.03930 1.22695 0.95197 0.80352 1.02500
1.86281 1.16151 1.31345 1.86511 1.19676 0.84470 0.88318 0.89427
1.67423 1.06623 1.32231 1.20543 1.22572 0.89098 0.97488 0.90665
1.21805 1.01439 0.92387 1.08107 1.20186 0.90403 0.97081 0.90397
1.20944 1.01382 0.91801 1.03921 1.19762 0.94158 0.92403 1.14598
1.17689 0.79758 0.82223 0.84191 1.90822 1.56242 1.61932 1.31282
1.46067 1.50093 1.32658 1.08078 1.21552 0.93859 0.86878 0.98272
1.21790 0.99909 0.99027 0.94671 1.22093 0.95234 0.95906 0.98437
0.90961 1.23073 1.00103 1.00054 0.94506 1.21951 0.87442 0.91090
0.96874 1.44517 1.01218 1.50560 1.36831 1.19098 0.80186 1.21717
1.13796 0.90551 1.24784 0.98191 0.99355 0.98541 1.69808 1.32737
1.32105 1.22635 0.86076 0.85008 0.77624 0.76846 1.21661 1.21687
1.20720 1.21365 0.87903 0.95254 0.94113 0.91274 0.90113 0.91400
0.91383 0.91474 0.81891 0.83882 0.89460 0.90005 0.90625 0.76652
0.90764 0.91343 0.91650 0.91151 0.92481 0.92236 0.87712 0.97186
0.93821 0.95961 0.96256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.34 10.28 37.16 0.38 -0.96 16
2 C 0.07 0.66 6.03 37.16 0.22 0.88 16
3 O -0.30 -3.84 9.57 -17.96 -0.17 -4.02 16
4 C 0.36 4.41 7.51 -16.61 -0.12 4.29 16
5 N -0.54 -5.69 9.21 -12.98 -0.12 -5.81 16
6 C 0.16 1.17 11.17 -17.49 -0.20 0.98 16
7 C -0.22 -1.47 9.79 -39.50 -0.39 -1.86 16
8 C 0.03 0.24 5.95 -103.93 -0.62 -0.37 16
9 C -0.12 -0.87 9.69 36.00 0.35 -0.52 16
10 C -0.20 -2.42 5.66 -104.69 -0.59 -3.01 16
11 C 0.58 8.06 5.42 -12.47 -0.07 8.00 16
12 O -0.53 -9.48 17.11 5.29 0.09 -9.39 16
13 N -0.72 -8.57 5.55 -61.35 -0.34 -8.91 16
14 C 0.12 1.56 5.54 -4.04 -0.02 1.54 16
15 C -0.12 -1.51 4.72 -26.73 -0.13 -1.64 16
16 C -0.10 -1.65 2.95 -88.78 -0.26 -1.91 16
17 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
18 C -0.14 -2.59 6.55 -24.47 -0.16 -2.75 16
19 C 0.15 3.73 5.89 -2.42 -0.01 3.72 16
20 N -0.61 -15.93 3.40 -169.94 -0.58 -16.51 16
21 C -0.22 -6.29 10.27 -15.06 -0.15 -6.44 16
22 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16
23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16
24 N -0.92 -27.38 10.09 55.49 0.56 -26.82 16
25 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16
26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
29 C 0.14 2.98 6.11 -3.06 -0.02 2.96 16
30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16
34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16
35 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16
36 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16
37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
38 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16
39 H 0.07 0.60 7.19 -51.93 -0.37 0.23 16
40 H 0.40 3.82 8.46 -40.82 -0.35 3.47 16
41 H 0.07 1.16 7.58 -51.93 -0.39 0.76 16
42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16
45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
46 H 0.06 1.09 8.05 -51.92 -0.42 0.67 16
47 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16
48 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16
49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
50 H 0.02 0.48 7.73 -51.93 -0.40 0.07 16
51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
LS Contribution 415.68 15.07 6.26 6.26
Total: -1.00 -35.23 415.68 -9.74 -44.97
By element:
Atomic # 1 Polarization: 8.87 SS G_CDS: -8.53 Total: 0.34 kcal
Atomic # 6 Polarization: 4.29 SS G_CDS: -1.88 Total: 2.41 kcal
Atomic # 7 Polarization: -57.58 SS G_CDS: -0.48 Total: -58.05 kcal
Atomic # 8 Polarization: -13.32 SS G_CDS: -0.08 Total: -13.40 kcal
Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -35.23 -9.74 -44.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001494035554.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.107 kcal
(2) G-P(sol) polarization free energy of solvation -35.229 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.858 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds