Wall clock time and date at job start Wed Apr 1 2020 04:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42895 * 109.46899 * 2 1 4 4 C 1.35424 * 116.99998 * 179.97438 * 3 2 1 5 5 N 1.32240 * 119.80171 * 0.02828 * 4 3 2 6 6 C 1.31878 * 121.80072 * 179.97438 * 5 4 3 7 7 C 1.38350 * 121.19179 * 0.02562 * 6 5 4 8 8 C 1.38338 * 119.45283 * 359.69687 * 7 6 5 9 9 C 1.50698 * 120.82575 * 180.29711 * 8 7 6 10 10 C 1.39993 * 118.34996 * 0.53910 * 8 7 6 11 11 C 1.47523 * 120.59601 * 179.75555 * 10 8 7 12 12 O 1.21588 * 120.00336 * 269.44984 * 11 10 8 13 13 N 1.34784 * 119.99748 * 89.72373 * 11 10 8 14 14 C 1.46499 * 119.99893 * 179.72590 * 13 11 10 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46990 * 180.02562 * 15 14 13 17 17 H 1.09006 * 110.64456 * 54.29179 * 16 15 14 18 18 C 1.55157 * 110.72393 * 177.43947 * 16 15 14 19 19 C 1.55119 * 101.48924 * 153.73099 * 18 16 15 20 20 N 1.47424 * 104.94264 * 323.22175 * 19 18 16 21 21 C 1.36933 * 125.64823 * 203.96581 * 20 19 18 22 22 H 1.08003 * 120.00052 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00212 * 0.04386 * 21 20 19 24 24 N 1.31621 * 119.99778 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00129 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46904 * 90.00021 * 25 23 21 27 27 H 1.48498 * 109.46908 * 209.99969 * 25 23 21 28 28 H 1.48497 * 109.47024 * 329.99881 * 25 23 21 29 29 C 1.47028 * 108.70206 * 24.00479 * 20 19 18 30 30 H 1.08992 * 109.47057 * 59.99853 * 1 2 3 31 31 H 1.08999 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46930 * 299.99565 * 1 2 3 33 33 H 1.09002 * 109.46930 * 240.00435 * 2 1 3 34 34 H 1.08992 * 109.47057 * 120.00147 * 2 1 3 35 35 H 1.08001 * 119.40210 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.27542 * 179.97438 * 7 6 5 37 37 H 1.09005 * 109.47087 * 270.25406 * 9 8 7 38 38 H 1.08997 * 109.47442 * 30.24490 * 9 8 7 39 39 H 1.08997 * 109.47710 * 150.25032 * 9 8 7 40 40 H 0.97005 * 119.99846 * 359.72378 * 13 11 10 41 41 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 42 42 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 43 43 H 1.09000 * 109.47195 * 299.99415 * 15 14 13 44 44 H 1.08994 * 109.47584 * 59.99634 * 15 14 13 45 45 H 1.09000 * 111.00353 * 271.94261 * 18 16 15 46 46 H 1.09007 * 111.00295 * 35.78441 * 18 16 15 47 47 H 1.08995 * 110.41963 * 204.29599 * 19 18 16 48 48 H 1.08997 * 110.29947 * 82.08912 * 19 18 16 49 49 H 0.97003 * 119.99782 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.87970 * 239.52453 * 29 20 19 51 51 H 1.08999 * 110.00768 * 118.42882 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1509 0.4733 0.0005 6 6 5.4635 0.6004 0.0005 7 6 6.0626 1.8475 0.0011 8 6 5.2714 2.9822 -0.0047 9 6 5.8912 4.3558 -0.0109 10 6 3.8806 2.8229 0.0006 11 6 2.9900 3.9990 0.0003 12 8 2.6186 4.4807 1.0531 13 7 2.5837 4.5362 -1.1672 14 6 1.6945 5.7005 -1.1675 15 6 1.3878 6.1074 -2.6102 16 6 0.4597 7.3238 -2.6107 17 1 0.8840 8.1311 -2.0137 18 6 0.1809 7.8010 -4.0604 19 6 -1.2003 8.4884 -3.8992 20 7 -1.9242 7.6612 -2.9168 21 6 -3.2853 7.5783 -2.7919 22 1 -3.7205 6.9407 -2.0365 23 6 -4.1059 8.3135 -3.6363 24 7 -3.5756 9.0899 -4.5574 25 14 -5.9627 8.1998 -3.4664 26 1 -6.4366 9.2343 -2.5121 27 1 -6.5954 8.4216 -4.7914 28 1 -6.3319 6.8534 -2.9606 29 6 -0.9426 6.9407 -2.0927 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 6.0820 -0.2850 0.0008 36 1 7.1391 1.9344 0.0015 37 1 6.0444 4.6900 1.0153 38 1 6.8501 4.3194 -0.5279 39 1 5.2278 5.0516 -0.5244 40 1 2.8800 4.1519 -2.0071 41 1 0.7655 5.4484 -0.6563 42 1 2.1800 6.5287 -0.6514 43 1 2.3166 6.3595 -3.1219 44 1 0.9021 5.2791 -3.1260 45 1 0.9383 8.5122 -4.3901 46 1 0.1174 6.9550 -4.7449 47 1 -1.7325 8.5005 -4.8503 48 1 -1.0758 9.5034 -3.5220 49 1 -4.1490 9.6039 -5.1473 50 1 -1.0934 5.8657 -2.1917 51 1 -1.0451 7.2347 -1.0482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494035554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:21 Heat of formation + Delta-G solvation = -25.857834 kcal Electronic energy + Delta-G solvation = -30381.348922 eV Core-core repulsion = 26281.380862 eV Total energy + Delta-G solvation = -4099.968060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29031 -39.37846 -38.45576 -37.74752 -35.16856 -34.29353 -33.01434 -32.43619 -30.95363 -30.24912 -28.95520 -28.46650 -26.61385 -25.03073 -24.17410 -23.87351 -22.34203 -21.92295 -20.82385 -20.06473 -19.34231 -18.40348 -17.84377 -17.42445 -16.88771 -16.66133 -15.97392 -15.67026 -15.39511 -14.83132 -14.64541 -14.47015 -14.33451 -14.15323 -13.65162 -13.56746 -13.46956 -13.25489 -13.07121 -12.81913 -12.52312 -12.49518 -12.32072 -12.23343 -11.88491 -11.79574 -11.66912 -11.55859 -11.05985 -11.04335 -10.87410 -10.73973 -10.54651 -10.12766 -10.06836 -9.95357 -9.90593 -9.76006 -9.69220 -9.42193 -9.09056 -8.89018 -8.60503 -6.77453 -5.60888 -3.01973 0.53095 0.83462 2.44665 2.62657 3.03623 3.29826 3.42872 3.47669 3.49651 3.88622 4.23266 4.47495 4.52483 4.53614 4.67031 4.74856 4.79952 4.95060 5.03546 5.08532 5.10517 5.13137 5.15528 5.33111 5.38000 5.42421 5.51979 5.55944 5.59542 5.63404 5.66434 5.77175 5.82799 5.84656 5.92859 6.00986 6.05141 6.21208 6.26122 6.41014 6.43202 6.64140 6.68085 6.81850 6.88479 7.02630 7.35838 7.41671 7.57113 7.68177 7.90411 8.09767 8.41531 9.27402 9.88490 10.54041 11.43089 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002237 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.317578 B =12515.410957 C =13976.941993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.068 3.932 3 O -0.297 6.297 4 C 0.361 3.639 5 N -0.544 5.544 6 C 0.158 3.842 7 C -0.217 4.217 8 C 0.027 3.973 9 C -0.124 4.124 10 C -0.203 4.203 11 C 0.577 3.423 12 O -0.527 6.527 13 N -0.718 5.718 14 C 0.117 3.883 15 C -0.116 4.116 16 C -0.097 4.097 17 H 0.072 0.928 18 C -0.139 4.139 19 C 0.151 3.849 20 N -0.605 5.605 21 C -0.219 4.219 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.140 3.860 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.164 0.836 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.400 0.600 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.010 0.990 49 H 0.251 0.749 50 H 0.022 0.978 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.763 -17.280 5.980 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.007 4.007 3 O -0.203 6.203 4 C 0.181 3.819 5 N -0.268 5.268 6 C 0.002 3.998 7 C -0.237 4.237 8 C 0.019 3.981 9 C -0.180 4.180 10 C -0.209 4.209 11 C 0.361 3.639 12 O -0.403 6.403 13 N -0.369 5.369 14 C -0.006 4.006 15 C -0.154 4.154 16 C -0.117 4.117 17 H 0.090 0.910 18 C -0.177 4.177 19 C 0.026 3.974 20 N -0.331 5.331 21 C -0.348 4.348 22 H 0.094 0.906 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.014 3.986 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.181 0.819 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.233 0.767 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.040 0.960 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 21.630 -17.470 6.653 28.588 hybrid contribution -0.373 0.280 -0.209 0.511 sum 21.256 -17.190 6.444 28.087 Atomic orbital electron populations 1.21846 0.92552 1.03010 1.03930 1.22695 0.95197 0.80352 1.02500 1.86281 1.16151 1.31345 1.86511 1.19676 0.84470 0.88318 0.89427 1.67423 1.06623 1.32231 1.20543 1.22572 0.89098 0.97488 0.90665 1.21805 1.01439 0.92387 1.08107 1.20186 0.90403 0.97081 0.90397 1.20944 1.01382 0.91801 1.03921 1.19762 0.94158 0.92403 1.14598 1.17689 0.79758 0.82223 0.84191 1.90822 1.56242 1.61932 1.31282 1.46067 1.50093 1.32658 1.08078 1.21552 0.93859 0.86878 0.98272 1.21790 0.99909 0.99027 0.94671 1.22093 0.95234 0.95906 0.98437 0.90961 1.23073 1.00103 1.00054 0.94506 1.21951 0.87442 0.91090 0.96874 1.44517 1.01218 1.50560 1.36831 1.19098 0.80186 1.21717 1.13796 0.90551 1.24784 0.98191 0.99355 0.98541 1.69808 1.32737 1.32105 1.22635 0.86076 0.85008 0.77624 0.76846 1.21661 1.21687 1.20720 1.21365 0.87903 0.95254 0.94113 0.91274 0.90113 0.91400 0.91383 0.91474 0.81891 0.83882 0.89460 0.90005 0.90625 0.76652 0.90764 0.91343 0.91650 0.91151 0.92481 0.92236 0.87712 0.97186 0.93821 0.95961 0.96256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.07 0.66 6.03 37.16 0.22 0.88 16 3 O -0.30 -3.84 9.57 -17.96 -0.17 -4.02 16 4 C 0.36 4.41 7.51 -16.61 -0.12 4.29 16 5 N -0.54 -5.69 9.21 -12.98 -0.12 -5.81 16 6 C 0.16 1.17 11.17 -17.49 -0.20 0.98 16 7 C -0.22 -1.47 9.79 -39.50 -0.39 -1.86 16 8 C 0.03 0.24 5.95 -103.93 -0.62 -0.37 16 9 C -0.12 -0.87 9.69 36.00 0.35 -0.52 16 10 C -0.20 -2.42 5.66 -104.69 -0.59 -3.01 16 11 C 0.58 8.06 5.42 -12.47 -0.07 8.00 16 12 O -0.53 -9.48 17.11 5.29 0.09 -9.39 16 13 N -0.72 -8.57 5.55 -61.35 -0.34 -8.91 16 14 C 0.12 1.56 5.54 -4.04 -0.02 1.54 16 15 C -0.12 -1.51 4.72 -26.73 -0.13 -1.64 16 16 C -0.10 -1.65 2.95 -88.78 -0.26 -1.91 16 17 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.14 -2.59 6.55 -24.47 -0.16 -2.75 16 19 C 0.15 3.73 5.89 -2.42 -0.01 3.72 16 20 N -0.61 -15.93 3.40 -169.94 -0.58 -16.51 16 21 C -0.22 -6.29 10.27 -15.06 -0.15 -6.44 16 22 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 24 N -0.92 -27.38 10.09 55.49 0.56 -26.82 16 25 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.14 2.98 6.11 -3.06 -0.02 2.96 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 39 H 0.07 0.60 7.19 -51.93 -0.37 0.23 16 40 H 0.40 3.82 8.46 -40.82 -0.35 3.47 16 41 H 0.07 1.16 7.58 -51.93 -0.39 0.76 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.09 8.05 -51.92 -0.42 0.67 16 47 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.02 0.48 7.73 -51.93 -0.40 0.07 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 415.68 15.07 6.26 6.26 Total: -1.00 -35.23 415.68 -9.74 -44.97 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.53 Total: 0.34 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.88 Total: 2.41 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.48 Total: -58.05 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.08 Total: -13.40 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.23 -9.74 -44.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494035554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.107 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds