Wall clock time and date at job start Wed Apr 1 2020 04:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42895 * 109.46899 * 2 1 4 4 C 1.35424 * 116.99998 * 179.97438 * 3 2 1 5 5 N 1.32240 * 119.80171 * 0.02828 * 4 3 2 6 6 C 1.31878 * 121.80072 * 179.97438 * 5 4 3 7 7 C 1.38350 * 121.19179 * 0.02562 * 6 5 4 8 8 C 1.38338 * 119.45283 * 359.69687 * 7 6 5 9 9 C 1.50698 * 120.82575 * 180.29711 * 8 7 6 10 10 C 1.39993 * 118.34996 * 0.53910 * 8 7 6 11 11 C 1.47523 * 120.59601 * 179.75555 * 10 8 7 12 12 O 1.21588 * 120.00336 * 269.44984 * 11 10 8 13 13 N 1.34784 * 119.99748 * 89.72373 * 11 10 8 14 14 C 1.46499 * 119.99893 * 179.72590 * 13 11 10 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46990 * 180.02562 * 15 14 13 17 17 H 1.09006 * 110.64456 * 54.29179 * 16 15 14 18 18 C 1.55157 * 110.72393 * 177.43947 * 16 15 14 19 19 C 1.55119 * 101.48924 * 153.73099 * 18 16 15 20 20 N 1.47424 * 104.94264 * 323.22175 * 19 18 16 21 21 C 1.36933 * 125.64823 * 203.96581 * 20 19 18 22 22 H 1.08003 * 120.00052 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00212 * 0.04386 * 21 20 19 24 24 N 1.31621 * 119.99778 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00129 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46904 * 90.00021 * 25 23 21 27 27 H 1.48498 * 109.46908 * 209.99969 * 25 23 21 28 28 H 1.48497 * 109.47024 * 329.99881 * 25 23 21 29 29 C 1.47028 * 108.70206 * 24.00479 * 20 19 18 30 30 H 1.08992 * 109.47057 * 59.99853 * 1 2 3 31 31 H 1.08999 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46930 * 299.99565 * 1 2 3 33 33 H 1.09002 * 109.46930 * 240.00435 * 2 1 3 34 34 H 1.08992 * 109.47057 * 120.00147 * 2 1 3 35 35 H 1.08001 * 119.40210 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.27542 * 179.97438 * 7 6 5 37 37 H 1.09005 * 109.47087 * 270.25406 * 9 8 7 38 38 H 1.08997 * 109.47442 * 30.24490 * 9 8 7 39 39 H 1.08997 * 109.47710 * 150.25032 * 9 8 7 40 40 H 0.97005 * 119.99846 * 359.72378 * 13 11 10 41 41 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 42 42 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 43 43 H 1.09000 * 109.47195 * 299.99415 * 15 14 13 44 44 H 1.08994 * 109.47584 * 59.99634 * 15 14 13 45 45 H 1.09000 * 111.00353 * 271.94261 * 18 16 15 46 46 H 1.09007 * 111.00295 * 35.78441 * 18 16 15 47 47 H 1.08995 * 110.41963 * 204.29599 * 19 18 16 48 48 H 1.08997 * 110.29947 * 82.08912 * 19 18 16 49 49 H 0.97003 * 119.99782 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.87970 * 239.52453 * 29 20 19 51 51 H 1.08999 * 110.00768 * 118.42882 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1509 0.4733 0.0005 6 6 5.4635 0.6004 0.0005 7 6 6.0626 1.8475 0.0011 8 6 5.2714 2.9822 -0.0047 9 6 5.8912 4.3558 -0.0109 10 6 3.8806 2.8229 0.0006 11 6 2.9900 3.9990 0.0003 12 8 2.6186 4.4807 1.0531 13 7 2.5837 4.5362 -1.1672 14 6 1.6945 5.7005 -1.1675 15 6 1.3878 6.1074 -2.6102 16 6 0.4597 7.3238 -2.6107 17 1 0.8840 8.1311 -2.0137 18 6 0.1809 7.8010 -4.0604 19 6 -1.2003 8.4884 -3.8992 20 7 -1.9242 7.6612 -2.9168 21 6 -3.2853 7.5783 -2.7919 22 1 -3.7205 6.9407 -2.0365 23 6 -4.1059 8.3135 -3.6363 24 7 -3.5756 9.0899 -4.5574 25 14 -5.9627 8.1998 -3.4664 26 1 -6.4366 9.2343 -2.5121 27 1 -6.5954 8.4216 -4.7914 28 1 -6.3319 6.8534 -2.9606 29 6 -0.9426 6.9407 -2.0927 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 6.0820 -0.2850 0.0008 36 1 7.1391 1.9344 0.0015 37 1 6.0444 4.6900 1.0153 38 1 6.8501 4.3194 -0.5279 39 1 5.2278 5.0516 -0.5244 40 1 2.8800 4.1519 -2.0071 41 1 0.7655 5.4484 -0.6563 42 1 2.1800 6.5287 -0.6514 43 1 2.3166 6.3595 -3.1219 44 1 0.9021 5.2791 -3.1260 45 1 0.9383 8.5122 -4.3901 46 1 0.1174 6.9550 -4.7449 47 1 -1.7325 8.5005 -4.8503 48 1 -1.0758 9.5034 -3.5220 49 1 -4.1490 9.6039 -5.1473 50 1 -1.0934 5.8657 -2.1917 51 1 -1.0451 7.2347 -1.0482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494035554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:20 Heat of formation + Delta-G solvation = -50.671304 kcal Electronic energy + Delta-G solvation = -30382.424915 eV Core-core repulsion = 26281.380862 eV Total energy + Delta-G solvation = -4101.044053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06361 -40.42514 -39.41557 -39.16797 -36.49653 -35.03147 -34.69779 -33.23440 -32.46616 -31.21990 -30.57638 -29.11968 -28.15207 -26.68086 -25.26387 -24.59510 -23.59020 -22.72319 -21.99713 -21.74382 -20.77460 -19.15442 -18.90385 -18.77862 -18.16245 -17.53475 -17.13629 -16.97360 -16.61931 -16.14696 -15.91496 -15.57875 -15.33934 -15.14203 -15.01176 -14.61266 -14.28128 -14.17757 -14.09332 -13.79943 -13.64328 -13.52946 -13.45381 -13.35864 -13.22501 -13.11774 -12.87862 -12.84611 -12.69617 -12.53655 -12.26530 -12.00914 -11.81097 -11.78461 -11.67011 -11.45614 -11.36161 -11.20499 -10.75618 -10.67083 -10.58587 -10.18468 -9.60013 -8.88678 -7.78597 -5.22912 -0.15173 0.17189 1.40892 1.44109 1.46354 1.55184 1.89646 2.08345 2.48369 2.60962 3.23281 3.30135 3.66329 3.67654 3.72373 3.76630 3.85098 3.91929 4.01365 4.08850 4.09494 4.15864 4.30324 4.33567 4.36744 4.43724 4.57794 4.62212 4.67378 4.69179 4.72847 4.76469 4.80102 4.86295 4.87862 5.00485 5.06403 5.09807 5.14656 5.17125 5.22004 5.24627 5.35194 5.42631 5.45103 5.50462 5.68944 5.83128 6.14122 6.31837 6.40761 6.72066 7.09093 7.10974 7.78695 8.42531 9.23052 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002237 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.317578 B =12515.410957 C =13976.941993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.325 6.325 4 C 0.339 3.661 5 N -0.557 5.557 6 C 0.157 3.843 7 C -0.201 4.201 8 C 0.023 3.977 9 C -0.123 4.123 10 C -0.229 4.229 11 C 0.580 3.420 12 O -0.578 6.578 13 N -0.704 5.704 14 C 0.124 3.876 15 C -0.099 4.099 16 C -0.083 4.083 17 H 0.081 0.919 18 C -0.121 4.121 19 C 0.149 3.851 20 N -0.629 5.629 21 C -0.242 4.242 22 H 0.075 0.925 23 C -0.068 4.068 24 N -0.948 5.948 25 Si 0.980 3.020 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.271 1.271 29 C 0.134 3.866 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.202 0.798 36 H 0.184 0.816 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.413 0.587 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.072 0.928 48 H -0.016 1.016 49 H 0.248 0.752 50 H 0.022 0.978 51 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.809 -18.963 5.507 32.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.233 6.233 4 C 0.160 3.840 5 N -0.281 5.281 6 C 0.001 3.999 7 C -0.221 4.221 8 C 0.015 3.985 9 C -0.179 4.179 10 C -0.235 4.235 11 C 0.366 3.634 12 O -0.458 6.458 13 N -0.355 5.355 14 C 0.000 4.000 15 C -0.137 4.137 16 C -0.103 4.103 17 H 0.100 0.900 18 C -0.159 4.159 19 C 0.024 3.976 20 N -0.355 5.355 21 C -0.371 4.371 22 H 0.093 0.907 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.808 3.192 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.196 1.196 29 C 0.009 3.991 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.219 0.781 36 H 0.201 0.799 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.250 0.750 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.002 0.998 49 H 0.057 0.943 50 H 0.040 0.960 51 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 24.708 -19.181 6.157 31.880 hybrid contribution -1.243 0.763 -0.028 1.459 sum 23.465 -18.418 6.129 30.454 Atomic orbital electron populations 1.21867 0.92026 1.04324 1.02773 1.22810 0.95594 0.79527 1.02865 1.86241 1.17214 1.32849 1.86975 1.19835 0.84434 0.88935 0.90802 1.67480 1.07975 1.31623 1.21058 1.23342 0.88332 0.99407 0.88782 1.22243 1.03165 0.91123 1.05561 1.20528 0.89319 0.98848 0.89756 1.21010 1.02477 0.90403 1.04049 1.19757 0.95201 0.91268 1.17318 1.18067 0.79335 0.82361 0.83660 1.90784 1.58280 1.63677 1.33028 1.45916 1.49155 1.31993 1.08442 1.21361 0.92955 0.87386 0.98291 1.21629 1.00416 0.97080 0.94547 1.22008 0.93315 0.97892 0.97054 0.90027 1.22913 0.96968 1.00378 0.95670 1.21802 0.90482 0.90576 0.94724 1.44862 1.01402 1.51152 1.38088 1.19445 0.81950 1.21819 1.13868 0.90716 1.25638 1.02665 0.99285 0.98417 1.70062 1.33928 1.32645 1.23169 0.85052 0.79555 0.77917 0.76656 1.21410 1.21523 1.19587 1.21558 0.89687 0.94672 0.93215 0.92227 0.87558 0.92644 0.90643 0.91322 0.78087 0.79887 0.89692 0.86776 0.91885 0.75002 0.93624 0.91214 0.88020 0.91124 0.89284 0.91491 0.91046 0.99827 0.94270 0.95981 0.97186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.28 71.99 0.74 -1.93 16 2 C 0.07 1.32 6.03 71.99 0.43 1.75 16 3 O -0.33 -8.72 9.57 -87.19 -0.83 -9.56 16 4 C 0.34 8.23 7.51 85.13 0.64 8.87 16 5 N -0.56 -10.82 9.21 -308.00 -2.84 -13.66 16 6 C 0.16 1.81 11.17 84.71 0.95 2.76 16 7 C -0.20 -1.96 9.79 22.32 0.22 -1.74 16 8 C 0.02 0.37 5.95 -19.42 -0.12 0.25 16 9 C -0.12 -1.43 9.69 71.24 0.69 -0.74 16 10 C -0.23 -5.36 5.66 -19.91 -0.11 -5.47 16 11 C 0.58 16.44 5.42 86.69 0.47 16.91 16 12 O -0.58 -21.68 17.11 -3.99 -0.07 -21.75 16 13 N -0.70 -16.43 5.55 -466.28 -2.59 -19.02 16 14 C 0.12 3.23 5.54 86.38 0.48 3.71 16 15 C -0.10 -2.35 4.72 30.60 0.14 -2.21 16 16 C -0.08 -2.71 2.95 -9.60 -0.03 -2.74 16 17 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 18 C -0.12 -4.32 6.55 32.06 0.21 -4.11 16 19 C 0.15 7.52 5.89 86.93 0.51 8.03 16 20 N -0.63 -34.01 3.40 -691.57 -2.35 -36.35 16 21 C -0.24 -14.24 10.27 84.03 0.86 -13.38 16 22 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 24 N -0.95 -57.90 10.09 21.65 0.22 -57.68 16 25 Si 0.98 47.13 29.55 68.60 2.03 49.15 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 29 C 0.13 5.80 6.11 86.73 0.53 6.33 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 36 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 37 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.11 0.55 8.10 -2.39 -0.02 0.53 16 39 H 0.06 0.90 7.19 -2.39 -0.02 0.88 16 40 H 0.41 7.29 8.46 -92.70 -0.78 6.51 16 41 H 0.05 1.46 7.58 -2.39 -0.02 1.45 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 1.74 8.01 -2.39 -0.02 1.72 16 45 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.07 2.31 8.05 -2.38 -0.02 2.29 16 47 H 0.07 4.09 5.87 -2.39 -0.01 4.08 16 48 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 50 H 0.02 0.96 7.73 -2.39 -0.02 0.94 16 51 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -81.87 415.68 0.79 -81.07 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.14 Total: 15.00 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 7.09 Total: 12.78 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -7.55 Total: -126.71 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.90 Total: -31.31 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -81.87 0.79 -81.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494035554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.402 kcal (2) G-P(sol) polarization free energy of solvation -81.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds