Wall clock time and date at job start Wed Apr 1 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.47225 * 2 1 4 4 C 1.35428 * 116.99962 * 179.97438 * 3 2 1 5 5 N 1.32233 * 119.79899 * 0.02562 * 4 3 2 6 6 C 1.31877 * 121.79999 * 179.97438 * 5 4 3 7 7 C 1.38357 * 121.18758 * 359.97438 * 6 5 4 8 8 C 1.38344 * 119.45529 * 359.74860 * 7 6 5 9 9 C 1.39990 * 118.34708 * 0.49116 * 8 7 6 10 10 C 1.47518 * 120.59612 * 179.78139 * 9 8 7 11 11 O 1.21582 * 120.00464 * 179.72083 * 10 9 8 12 12 N 1.34780 * 119.99842 * 359.72371 * 10 9 8 13 13 C 1.46503 * 120.00080 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47197 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.49664 * 60.00294 * 14 13 12 16 16 C 1.53042 * 109.49640 * 180.02562 * 14 13 12 17 17 C 1.53112 * 109.50310 * 181.31403 * 16 14 13 18 18 C 1.53186 * 109.32979 * 298.66280 * 17 16 14 19 19 N 1.46923 * 108.78036 * 54.63855 * 18 17 16 20 20 C 1.36935 * 120.63847 * 126.40825 * 19 18 17 21 21 H 1.08006 * 119.99526 * 332.54715 * 20 19 18 22 22 C 1.38813 * 120.00344 * 152.54375 * 20 19 18 23 23 N 1.31617 * 119.99983 * 159.34484 * 22 20 19 24 24 Si 1.86796 * 119.99861 * 339.34278 * 22 20 19 25 25 H 1.48507 * 109.47305 * 92.97283 * 24 22 20 26 26 H 1.48500 * 109.47593 * 212.97182 * 24 22 20 27 27 H 1.48502 * 109.47452 * 332.97478 * 24 22 20 28 28 C 1.46935 * 118.73220 * 306.38628 * 19 18 17 29 29 H 1.08996 * 109.47083 * 300.00367 * 1 2 3 30 30 H 1.08997 * 109.46889 * 59.99726 * 1 2 3 31 31 H 1.08991 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47083 * 239.99633 * 2 1 3 33 33 H 1.08995 * 109.46871 * 119.99729 * 2 1 3 34 34 H 1.08001 * 119.41030 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.27154 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.82549 * 180.24905 * 8 7 6 37 37 H 0.96995 * 120.00275 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.46763 * 59.99612 * 13 12 10 39 39 H 1.09005 * 109.47224 * 300.00097 * 13 12 10 40 40 H 1.09000 * 109.46767 * 59.99836 * 15 14 13 41 41 H 1.09000 * 109.46822 * 299.99540 * 15 14 13 42 42 H 1.08999 * 109.46544 * 179.97438 * 15 14 13 43 43 H 1.08990 * 109.46420 * 301.37400 * 16 14 13 44 44 H 1.09001 * 109.45742 * 61.33461 * 16 14 13 45 45 H 1.08995 * 109.48552 * 178.70307 * 17 16 14 46 46 H 1.08993 * 109.48510 * 58.62038 * 17 16 14 47 47 H 1.09005 * 109.59231 * 294.84163 * 18 17 16 48 48 H 1.09006 * 109.70050 * 174.49276 * 18 17 16 49 49 H 0.97003 * 119.99787 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.58815 * 293.81764 * 28 19 18 51 51 H 1.09003 * 109.69950 * 173.46209 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6002 0.0005 7 6 6.0626 1.8473 0.0000 8 6 5.2714 2.9822 -0.0058 9 6 3.8806 2.8228 -0.0004 10 6 2.9902 3.9989 -0.0014 11 8 1.7837 3.8481 -0.0018 12 7 3.5140 5.2408 -0.0018 13 6 2.6297 6.4088 -0.0033 14 6 3.4718 7.6861 -0.0029 15 6 4.3564 7.7150 -1.2510 16 6 2.5486 8.9067 -0.0038 17 6 3.3910 10.1848 -0.0365 18 6 4.2710 10.2442 1.2159 19 7 5.0571 9.0059 1.3009 20 6 6.4200 9.0516 1.4256 21 1 6.9700 9.8947 1.0344 22 6 7.0946 8.0144 2.0549 23 7 8.3795 7.8350 1.8334 24 14 6.1787 6.8732 3.2161 25 1 5.6945 5.6871 2.4649 26 1 7.0925 6.4329 4.3007 27 1 5.0208 7.5921 3.8057 28 6 4.3528 7.7173 1.2499 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 6.0820 -0.2852 0.0009 35 1 7.1391 1.9341 0.0005 36 1 5.7157 3.9665 -0.0103 37 1 4.4764 5.3612 -0.0011 38 1 2.0000 6.3889 0.8862 39 1 2.0013 6.3877 -0.8938 40 1 3.7286 7.6942 -2.1418 41 1 5.0146 6.8461 -1.2500 42 1 4.9558 8.6253 -1.2505 43 1 1.9035 8.8734 -0.8817 44 1 1.9357 8.8990 0.8975 45 1 2.7330 11.0534 -0.0604 46 1 4.0223 10.1815 -0.9250 47 1 3.6416 10.3390 2.1008 48 1 4.9432 11.1000 1.1525 49 1 8.8510 7.1104 2.2735 50 1 3.7301 7.6059 2.1374 51 1 5.0773 6.9040 1.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500549780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:07 Heat of formation + Delta-G solvation = -16.419782 kcal Electronic energy + Delta-G solvation = -32077.983195 eV Core-core repulsion = 27978.424400 eV Total energy + Delta-G solvation = -4099.558795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00282 -39.57018 -38.36331 -38.08584 -34.93929 -33.44358 -32.75600 -32.17903 -31.41482 -30.64171 -30.10093 -26.79080 -26.11612 -25.37433 -24.71740 -23.72632 -22.52111 -22.40884 -20.71410 -20.35318 -18.80759 -18.42564 -17.57956 -17.05700 -16.74358 -16.44616 -15.63376 -15.38546 -15.15760 -14.98686 -14.39870 -14.33324 -14.11990 -14.00931 -13.76429 -13.64160 -13.55774 -13.19487 -12.95778 -12.78497 -12.54184 -12.49761 -12.45272 -12.18348 -12.01447 -11.68556 -11.63742 -11.22721 -11.07144 -10.91076 -10.77359 -10.56600 -10.41171 -10.16670 -10.11140 -10.06241 -9.90642 -9.67854 -9.56004 -9.47325 -8.89415 -8.66986 -8.60540 -7.01218 -6.01956 -3.36751 0.56131 1.10123 2.85938 2.95133 3.19592 3.28995 3.42800 3.46526 3.75662 4.08259 4.44430 4.60850 4.68048 4.78293 4.82036 4.85999 4.91546 5.03741 5.08681 5.19149 5.20770 5.21552 5.30253 5.37783 5.51499 5.59871 5.68378 5.68969 5.74674 5.79525 5.89738 5.93326 5.96509 5.98490 6.02389 6.18211 6.23439 6.25770 6.32300 6.36391 6.50958 6.59084 6.60078 6.63120 6.72606 6.80088 7.00491 7.13183 7.54241 7.69306 7.89968 8.26553 8.37653 8.88128 9.65529 10.04685 11.13896 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003640 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.084517 B = 7690.954793 C = 9165.217389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.270 6.270 4 C 0.372 3.628 5 N -0.548 5.548 6 C 0.163 3.837 7 C -0.217 4.217 8 C -0.006 4.006 9 C -0.209 4.209 10 C 0.562 3.438 11 O -0.523 6.523 12 N -0.722 5.722 13 C 0.134 3.866 14 C -0.094 4.094 15 C -0.128 4.128 16 C -0.096 4.096 17 C -0.136 4.136 18 C 0.146 3.854 19 N -0.603 5.603 20 C -0.254 4.254 21 H 0.086 0.914 22 C 0.024 3.976 23 N -0.907 5.907 24 Si 0.876 3.124 25 H -0.290 1.290 26 H -0.303 1.303 27 H -0.272 1.272 28 C 0.140 3.860 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.021 0.979 48 H 0.062 0.938 49 H 0.262 0.738 50 H 0.025 0.975 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 -11.785 -6.037 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.174 6.174 4 C 0.192 3.808 5 N -0.273 5.273 6 C 0.007 3.993 7 C -0.238 4.238 8 C -0.032 4.032 9 C -0.215 4.215 10 C 0.348 3.652 11 O -0.400 6.400 12 N -0.375 5.375 13 C 0.010 3.990 14 C -0.096 4.096 15 C -0.185 4.185 16 C -0.134 4.134 17 C -0.175 4.175 18 C 0.020 3.980 19 N -0.326 5.326 20 C -0.383 4.383 21 H 0.104 0.896 22 C -0.175 4.175 23 N -0.550 5.550 24 Si 0.707 3.293 25 H -0.218 1.218 26 H -0.232 1.232 27 H -0.197 1.197 28 C 0.014 3.986 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.182 0.818 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.043 0.957 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.925 -12.569 -5.982 17.695 hybrid contribution 0.668 -0.148 0.830 1.076 sum -10.257 -12.717 -5.152 17.130 Atomic orbital electron populations 1.21780 0.92876 1.02444 1.03736 1.22675 0.95158 0.81401 1.02219 1.86529 1.15554 1.29681 1.85651 1.19772 0.84630 0.88392 0.88015 1.67477 1.06645 1.32322 1.20824 1.22651 0.89131 0.97627 0.89932 1.21985 1.02053 0.92785 1.06933 1.21802 0.91304 1.00492 0.89616 1.20077 0.94266 0.92529 1.14649 1.17733 0.87713 0.82564 0.77147 1.90797 1.14059 1.85938 1.49175 1.46018 1.10991 1.05374 1.75119 1.21443 0.92232 0.83465 1.01865 1.21364 0.96268 0.93074 0.98896 1.21744 0.98761 1.03140 0.94885 1.21369 0.96813 0.94175 1.01023 1.22051 0.98525 0.96120 1.00835 1.20960 0.93344 0.89641 0.94028 1.44308 1.03654 0.99278 1.85324 1.18933 0.79860 1.07962 1.31506 0.89599 1.25254 0.95051 0.98301 0.98848 1.69837 1.08756 1.32278 1.44134 0.87086 0.79274 0.80579 0.82348 1.21823 1.23165 1.19676 1.21351 0.94165 0.89795 0.93259 0.91504 0.91524 0.90520 0.91704 0.91711 0.81815 0.83569 0.83595 0.76204 0.91664 0.91471 0.93919 0.93561 0.90420 0.92681 0.92396 0.92696 0.91476 0.96081 0.91926 0.92812 0.95730 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.70 6.03 37.16 0.22 0.92 16 3 O -0.27 -4.21 8.22 -39.75 -0.33 -4.53 16 4 C 0.37 5.70 7.51 -16.61 -0.12 5.57 16 5 N -0.55 -7.23 9.21 -12.98 -0.12 -7.35 16 6 C 0.16 1.72 11.17 -17.49 -0.20 1.53 16 7 C -0.22 -2.36 10.09 -39.50 -0.40 -2.76 16 8 C -0.01 -0.08 9.64 -38.89 -0.37 -0.46 16 9 C -0.21 -3.26 5.90 -104.69 -0.62 -3.88 16 10 C 0.56 9.76 7.77 -12.48 -0.10 9.66 16 11 O -0.52 -10.35 15.19 -16.48 -0.25 -10.60 16 12 N -0.72 -11.77 4.95 -61.35 -0.30 -12.07 16 13 C 0.13 2.12 4.57 -4.04 -0.02 2.10 16 14 C -0.09 -1.54 0.53 -154.39 -0.08 -1.62 16 15 C -0.13 -2.07 7.81 37.16 0.29 -1.78 16 16 C -0.10 -1.41 4.72 -26.65 -0.13 -1.54 16 17 C -0.14 -2.08 5.74 -26.58 -0.15 -2.23 16 18 C 0.15 2.72 6.52 -3.72 -0.02 2.70 16 19 N -0.60 -13.37 2.21 -172.32 -0.38 -13.75 16 20 C -0.25 -6.68 10.03 -15.06 -0.15 -6.83 16 21 H 0.09 2.43 8.06 -52.48 -0.42 2.00 16 22 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 23 N -0.91 -26.30 13.97 55.49 0.78 -25.52 16 24 Si 0.88 21.53 24.35 -169.99 -4.14 17.40 16 25 H -0.29 -6.65 6.62 56.52 0.37 -6.28 16 26 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.27 -6.77 6.64 56.52 0.38 -6.40 16 28 C 0.14 2.86 2.62 -3.71 -0.01 2.85 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.15 1.86 6.52 -52.49 -0.34 1.52 16 37 H 0.40 6.41 4.32 -40.82 -0.18 6.23 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.75 6.86 -51.93 -0.36 0.39 16 42 H 0.08 1.40 5.97 -51.93 -0.31 1.09 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.02 0.53 7.07 -51.93 -0.37 0.16 16 51 H 0.07 1.50 3.41 -51.93 -0.18 1.32 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -32.24 393.13 -8.38 -40.62 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.00 Total: 6.11 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.57 Total: 3.78 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.03 Total: -58.70 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.58 Total: -15.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.24 -8.38 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500549780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.203 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds