Wall clock time and date at job start Wed Apr 1 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.47225 * 2 1 4 4 C 1.35428 * 116.99962 * 179.97438 * 3 2 1 5 5 N 1.32233 * 119.79899 * 0.02562 * 4 3 2 6 6 C 1.31877 * 121.79999 * 179.97438 * 5 4 3 7 7 C 1.38357 * 121.18758 * 359.97438 * 6 5 4 8 8 C 1.38344 * 119.45529 * 359.74860 * 7 6 5 9 9 C 1.39990 * 118.34708 * 0.49116 * 8 7 6 10 10 C 1.47518 * 120.59612 * 179.78139 * 9 8 7 11 11 O 1.21582 * 120.00464 * 179.72083 * 10 9 8 12 12 N 1.34780 * 119.99842 * 359.72371 * 10 9 8 13 13 C 1.46503 * 120.00080 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47197 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.49664 * 60.00294 * 14 13 12 16 16 C 1.53042 * 109.49640 * 180.02562 * 14 13 12 17 17 C 1.53112 * 109.50310 * 181.31403 * 16 14 13 18 18 C 1.53186 * 109.32979 * 298.66280 * 17 16 14 19 19 N 1.46923 * 108.78036 * 54.63855 * 18 17 16 20 20 C 1.36935 * 120.63847 * 126.40825 * 19 18 17 21 21 H 1.08006 * 119.99526 * 332.54715 * 20 19 18 22 22 C 1.38813 * 120.00344 * 152.54375 * 20 19 18 23 23 N 1.31617 * 119.99983 * 159.34484 * 22 20 19 24 24 Si 1.86796 * 119.99861 * 339.34278 * 22 20 19 25 25 H 1.48507 * 109.47305 * 92.97283 * 24 22 20 26 26 H 1.48500 * 109.47593 * 212.97182 * 24 22 20 27 27 H 1.48502 * 109.47452 * 332.97478 * 24 22 20 28 28 C 1.46935 * 118.73220 * 306.38628 * 19 18 17 29 29 H 1.08996 * 109.47083 * 300.00367 * 1 2 3 30 30 H 1.08997 * 109.46889 * 59.99726 * 1 2 3 31 31 H 1.08991 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47083 * 239.99633 * 2 1 3 33 33 H 1.08995 * 109.46871 * 119.99729 * 2 1 3 34 34 H 1.08001 * 119.41030 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.27154 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.82549 * 180.24905 * 8 7 6 37 37 H 0.96995 * 120.00275 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.46763 * 59.99612 * 13 12 10 39 39 H 1.09005 * 109.47224 * 300.00097 * 13 12 10 40 40 H 1.09000 * 109.46767 * 59.99836 * 15 14 13 41 41 H 1.09000 * 109.46822 * 299.99540 * 15 14 13 42 42 H 1.08999 * 109.46544 * 179.97438 * 15 14 13 43 43 H 1.08990 * 109.46420 * 301.37400 * 16 14 13 44 44 H 1.09001 * 109.45742 * 61.33461 * 16 14 13 45 45 H 1.08995 * 109.48552 * 178.70307 * 17 16 14 46 46 H 1.08993 * 109.48510 * 58.62038 * 17 16 14 47 47 H 1.09005 * 109.59231 * 294.84163 * 18 17 16 48 48 H 1.09006 * 109.70050 * 174.49276 * 18 17 16 49 49 H 0.97003 * 119.99787 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.58815 * 293.81764 * 28 19 18 51 51 H 1.09003 * 109.69950 * 173.46209 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3490 1.5247 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6002 0.0005 7 6 6.0626 1.8473 0.0000 8 6 5.2714 2.9822 -0.0058 9 6 3.8806 2.8228 -0.0004 10 6 2.9902 3.9989 -0.0014 11 8 1.7837 3.8481 -0.0018 12 7 3.5140 5.2408 -0.0018 13 6 2.6297 6.4088 -0.0033 14 6 3.4718 7.6861 -0.0029 15 6 4.3564 7.7150 -1.2510 16 6 2.5486 8.9067 -0.0038 17 6 3.3910 10.1848 -0.0365 18 6 4.2710 10.2442 1.2159 19 7 5.0571 9.0059 1.3009 20 6 6.4200 9.0516 1.4256 21 1 6.9700 9.8947 1.0344 22 6 7.0946 8.0144 2.0549 23 7 8.3795 7.8350 1.8334 24 14 6.1787 6.8732 3.2161 25 1 5.6945 5.6871 2.4649 26 1 7.0925 6.4329 4.3007 27 1 5.0208 7.5921 3.8057 28 6 4.3528 7.7173 1.2499 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 6.0820 -0.2852 0.0009 35 1 7.1391 1.9341 0.0005 36 1 5.7157 3.9665 -0.0103 37 1 4.4764 5.3612 -0.0011 38 1 2.0000 6.3889 0.8862 39 1 2.0013 6.3877 -0.8938 40 1 3.7286 7.6942 -2.1418 41 1 5.0146 6.8461 -1.2500 42 1 4.9558 8.6253 -1.2505 43 1 1.9035 8.8734 -0.8817 44 1 1.9357 8.8990 0.8975 45 1 2.7330 11.0534 -0.0604 46 1 4.0223 10.1815 -0.9250 47 1 3.6416 10.3390 2.1008 48 1 4.9432 11.1000 1.1525 49 1 8.8510 7.1104 2.2735 50 1 3.7301 7.6059 2.1374 51 1 5.0773 6.9040 1.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500549780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:06 Heat of formation + Delta-G solvation = -37.357638 kcal Electronic energy + Delta-G solvation = -32078.891128 eV Core-core repulsion = 27978.424400 eV Total energy + Delta-G solvation = -4100.466729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.05663 -40.88562 -39.72062 -39.09327 -36.44388 -35.00231 -33.98106 -33.04374 -32.98129 -32.20104 -31.06893 -28.13114 -27.50990 -27.10766 -25.71576 -24.79998 -24.04714 -23.33251 -22.17144 -21.62190 -20.07371 -19.67674 -18.78910 -18.55777 -18.08473 -17.43802 -17.16542 -16.68477 -16.42456 -16.11651 -15.89892 -15.59633 -15.38725 -15.27541 -15.05784 -14.98206 -14.92847 -14.58353 -14.22723 -13.93639 -13.76469 -13.61909 -13.56741 -13.38211 -13.34534 -13.20865 -12.88364 -12.59882 -12.50182 -12.34645 -12.11078 -11.95995 -11.78066 -11.62495 -11.55544 -11.37647 -11.22199 -11.13908 -11.08424 -10.70500 -10.61602 -10.18470 -9.61804 -8.87594 -8.14044 -5.43679 -0.44890 0.12377 1.22975 1.40262 1.46075 1.77401 1.91194 2.06841 2.39016 2.70923 3.06068 3.17730 3.33214 3.60739 3.65863 3.78086 3.85966 3.87078 3.89379 4.03450 4.06820 4.15719 4.31161 4.35347 4.37696 4.40362 4.46189 4.56937 4.69618 4.71462 4.76677 4.78510 4.78648 4.89549 4.91333 4.97559 5.01545 5.05966 5.13881 5.15705 5.15986 5.26433 5.31225 5.32936 5.41833 5.44136 5.67995 5.90560 6.16233 6.16683 6.35649 6.64152 6.94676 7.08677 7.65380 8.07546 9.05922 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003640 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.084517 B = 7690.954793 C = 9165.217389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 O -0.296 6.296 4 C 0.356 3.644 5 N -0.554 5.554 6 C 0.172 3.828 7 C -0.210 4.210 8 C -0.015 4.015 9 C -0.238 4.238 10 C 0.561 3.439 11 O -0.555 6.555 12 N -0.720 5.720 13 C 0.138 3.862 14 C -0.083 4.083 15 C -0.123 4.123 16 C -0.095 4.095 17 C -0.126 4.126 18 C 0.138 3.862 19 N -0.614 5.614 20 C -0.238 4.238 21 H 0.056 0.944 22 C -0.022 4.022 23 N -0.950 5.950 24 Si 0.928 3.072 25 H -0.269 1.269 26 H -0.315 1.315 27 H -0.277 1.277 28 C 0.139 3.861 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.209 0.791 35 H 0.177 0.823 36 H 0.146 0.854 37 H 0.402 0.598 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.027 0.973 48 H 0.055 0.945 49 H 0.261 0.739 50 H 0.016 0.984 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 -13.130 -6.831 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.202 6.202 4 C 0.177 3.823 5 N -0.278 5.278 6 C 0.016 3.984 7 C -0.229 4.229 8 C -0.041 4.041 9 C -0.244 4.244 10 C 0.348 3.652 11 O -0.435 6.435 12 N -0.373 5.373 13 C 0.014 3.986 14 C -0.085 4.085 15 C -0.180 4.180 16 C -0.132 4.132 17 C -0.164 4.164 18 C 0.013 3.987 19 N -0.338 5.338 20 C -0.368 4.368 21 H 0.074 0.926 22 C -0.217 4.217 23 N -0.596 5.596 24 Si 0.759 3.241 25 H -0.195 1.195 26 H -0.244 1.244 27 H -0.203 1.203 28 C 0.014 3.986 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.225 0.775 35 H 0.194 0.806 36 H 0.163 0.837 37 H 0.239 0.761 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.034 0.966 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.113 -13.899 -6.791 19.647 hybrid contribution 1.085 0.298 1.054 1.541 sum -11.028 -13.601 -5.737 18.426 Atomic orbital electron populations 1.21807 0.91517 1.04142 1.02850 1.22909 0.96248 0.80071 1.02647 1.86498 1.16097 1.31831 1.85753 1.19939 0.84915 0.88820 0.88633 1.67580 1.07693 1.31500 1.21058 1.23444 0.88524 0.99161 0.87301 1.22369 1.03375 0.92016 1.05179 1.21936 0.90707 1.01549 0.89907 1.20053 0.94980 0.92084 1.17307 1.18049 0.87605 0.83189 0.76335 1.90762 1.15381 1.86421 1.50927 1.46043 1.11064 1.05401 1.74792 1.21427 0.92038 0.82880 1.02240 1.21228 0.96043 0.94507 0.96725 1.21679 0.98753 1.01727 0.95825 1.21410 0.96576 0.92573 1.02685 1.21943 0.98300 0.97833 0.98362 1.21173 0.93483 0.87838 0.96207 1.44416 1.02569 1.01278 1.85503 1.18858 0.81813 1.06424 1.29717 0.92594 1.25679 0.95543 1.00114 1.00369 1.69936 1.10235 1.33649 1.45779 0.86223 0.77602 0.79949 0.80332 1.19542 1.24421 1.20286 1.21318 0.94021 0.88301 0.94953 0.92491 0.92227 0.87484 0.91032 0.91365 0.77453 0.80550 0.83659 0.76093 0.92232 0.90119 0.91354 0.94296 0.92462 0.89755 0.91924 0.89545 0.91941 0.95471 0.92646 0.92936 0.96612 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.06 1.25 6.03 71.98 0.43 1.69 16 3 O -0.30 -9.32 8.22 -66.42 -0.55 -9.87 16 4 C 0.36 10.78 7.51 85.13 0.64 11.42 16 5 N -0.55 -13.65 9.21 -308.00 -2.84 -16.49 16 6 C 0.17 3.10 11.17 84.71 0.95 4.05 16 7 C -0.21 -4.00 10.09 22.32 0.23 -3.77 16 8 C -0.02 -0.38 9.64 22.72 0.22 -0.17 16 9 C -0.24 -7.38 5.90 -19.91 -0.12 -7.49 16 10 C 0.56 19.52 7.77 86.69 0.67 20.20 16 11 O -0.56 -22.26 15.19 16.84 0.26 -22.00 16 12 N -0.72 -23.12 4.95 -466.29 -2.31 -25.43 16 13 C 0.14 4.17 4.57 86.38 0.39 4.56 16 14 C -0.08 -2.58 0.53 -52.10 -0.03 -2.61 16 15 C -0.12 -3.78 7.81 71.98 0.56 -3.22 16 16 C -0.09 -2.49 4.72 30.65 0.14 -2.35 16 17 C -0.13 -3.50 5.74 30.69 0.18 -3.32 16 18 C 0.14 4.98 6.52 86.36 0.56 5.55 16 19 N -0.61 -27.15 2.21 -699.09 -1.54 -28.69 16 20 C -0.24 -12.78 10.03 84.03 0.84 -11.94 16 21 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 22 C -0.02 -1.21 5.23 84.86 0.44 -0.77 16 23 N -0.95 -56.44 13.97 21.65 0.30 -56.14 16 24 Si 0.93 45.15 24.35 68.60 1.67 46.82 16 25 H -0.27 -11.96 6.62 99.48 0.66 -11.30 16 26 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 27 H -0.28 -13.60 6.64 99.48 0.66 -12.94 16 28 C 0.14 5.59 2.62 86.36 0.23 5.81 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 34 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.15 3.63 6.52 -2.91 -0.02 3.61 16 37 H 0.40 12.72 4.32 -92.71 -0.40 12.31 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.04 1.23 6.86 -2.39 -0.02 1.22 16 42 H 0.06 2.01 5.97 -2.39 -0.01 2.00 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.06 1.82 6.33 -2.39 -0.02 1.81 16 47 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.05 2.05 7.93 -2.38 -0.02 2.03 16 49 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 50 H 0.02 0.67 7.07 -2.39 -0.02 0.65 16 51 H 0.05 2.21 3.41 -2.39 -0.01 2.20 16 Total: -1.00 -72.39 393.13 2.52 -69.86 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.44 Total: 26.18 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.09 Total: 15.76 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -6.38 Total: -126.75 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.29 Total: -31.87 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.67 Total: 46.82 kcal Total: -72.39 2.52 -69.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500549780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.504 kcal (2) G-P(sol) polarization free energy of solvation -72.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds