Wall clock time and date at job start Wed Apr 1 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00059 * 2 1 4 4 N 1.34778 * 119.99855 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00011 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.46927 * 180.02562 * 5 4 2 7 7 C 1.38369 * 119.85286 * 269.72479 * 6 5 4 8 8 C 1.37963 * 120.14280 * 179.72484 * 7 6 5 9 9 C 1.39572 * 119.85050 * 0.54962 * 8 7 6 10 10 C 1.47849 * 120.14146 * 179.70354 * 9 8 7 11 11 O 1.21553 * 119.99935 * 149.11938 * 10 9 8 12 12 N 1.34775 * 119.99779 * 329.12432 * 10 9 8 13 13 C 1.46494 * 120.00352 * 3.77463 * 12 10 9 14 14 C 1.46501 * 119.99687 * 183.77299 * 12 10 9 15 15 C 1.53002 * 109.47085 * 89.99868 * 14 12 10 16 16 C 1.53003 * 109.47240 * 179.97438 * 15 14 12 17 17 N 1.46503 * 109.47135 * 180.02562 * 16 15 14 18 18 C 1.46500 * 119.99949 * 90.00331 * 17 16 15 19 19 C 1.36930 * 119.99666 * 270.00208 * 17 16 15 20 20 H 1.07999 * 120.00551 * 23.33245 * 19 17 16 21 21 C 1.38820 * 120.00010 * 203.33094 * 19 17 16 22 22 N 1.31617 * 119.99537 * 12.08742 * 21 19 17 23 23 Si 1.86798 * 120.00221 * 192.08458 * 21 19 17 24 24 H 1.48500 * 109.46878 * 90.00027 * 23 21 19 25 25 H 1.48497 * 109.47191 * 209.99819 * 23 21 19 26 26 H 1.48493 * 109.47251 * 330.00194 * 23 21 19 27 27 C 1.39579 * 119.71563 * 359.72239 * 9 8 7 28 28 C 1.37949 * 119.84965 * 0.02562 * 27 9 8 29 29 H 1.09000 * 109.46972 * 270.00334 * 1 2 3 30 30 H 1.08997 * 109.47332 * 29.99959 * 1 2 3 31 31 H 1.08995 * 109.47486 * 150.00677 * 1 2 3 32 32 H 0.97003 * 120.00146 * 359.97438 * 4 2 1 33 33 H 1.08996 * 109.47308 * 60.00410 * 5 4 2 34 34 H 1.08998 * 109.47007 * 300.00017 * 5 4 2 35 35 H 1.07996 * 119.92299 * 0.02562 * 7 6 5 36 36 H 1.07998 * 120.07093 * 180.25562 * 8 7 6 37 37 H 1.09002 * 109.47218 * 93.81382 * 13 12 10 38 38 H 1.09008 * 109.47288 * 213.81426 * 13 12 10 39 39 H 1.09000 * 109.47184 * 333.81347 * 13 12 10 40 40 H 1.09001 * 109.47202 * 209.99733 * 14 12 10 41 41 H 1.08994 * 109.47467 * 330.00141 * 14 12 10 42 42 H 1.08992 * 109.47096 * 300.00259 * 15 14 12 43 43 H 1.09008 * 109.46937 * 59.99940 * 15 14 12 44 44 H 1.09001 * 109.47376 * 300.00067 * 16 15 14 45 45 H 1.09000 * 109.47093 * 59.99931 * 16 15 14 46 46 H 1.08993 * 109.47233 * 87.11233 * 18 17 16 47 47 H 1.08995 * 109.46957 * 207.11883 * 18 17 16 48 48 H 1.08996 * 109.46907 * 327.11399 * 18 17 16 49 49 H 0.97007 * 120.00105 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.07077 * 179.97438 * 27 9 8 51 51 H 1.08005 * 119.92785 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0001 7 6 4.3835 -3.2353 1.2002 8 6 4.8379 -4.5379 1.2073 9 6 5.0711 -5.1990 0.0004 10 6 5.5643 -6.5928 0.0005 11 8 5.2572 -7.3462 -0.9025 12 7 6.3543 -7.0279 1.0020 13 6 6.6569 -6.1462 2.1321 14 6 6.9105 -8.3826 0.9604 15 6 8.2638 -8.3566 0.2472 16 6 8.8450 -9.7713 0.2043 17 7 10.1411 -9.7463 -0.4782 18 6 11.3694 -9.5292 0.2902 19 6 10.2044 -9.9260 -1.8341 20 1 9.3417 -9.7132 -2.4480 21 6 11.3776 -10.3815 -2.4199 22 7 12.3438 -10.8651 -1.6682 23 14 11.5851 -10.3083 -4.2749 24 1 12.1937 -9.0078 -4.6539 25 1 12.4688 -11.4163 -4.7183 26 1 10.2578 -10.4425 -4.9271 27 6 4.8369 -4.5385 -1.2067 28 6 4.3776 -3.2377 -1.1998 29 1 -0.3633 0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 1.6958 -2.0073 0.0013 33 1 4.0095 -0.6529 0.8894 34 1 4.0088 -0.6540 -0.8905 35 1 4.2065 -2.7212 2.1333 36 1 5.0174 -5.0433 2.1447 37 1 5.9457 -6.3305 2.9373 38 1 7.6680 -6.3453 2.4878 39 1 6.5824 -5.1069 1.8123 40 1 7.0427 -8.7524 1.9772 41 1 6.2280 -9.0391 0.4208 42 1 8.1316 -7.9867 -0.7695 43 1 8.9464 -7.7000 0.7868 44 1 8.9772 -10.1408 1.2212 45 1 8.1626 -10.4282 -0.3351 46 1 11.7386 -10.4847 0.6627 47 1 12.1235 -9.0734 -0.3514 48 1 11.1599 -8.8679 1.1309 49 1 13.1638 -11.1831 -2.0775 50 1 5.0157 -5.0443 -2.1440 51 1 4.1964 -2.7253 -2.1331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570201031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:03 Heat of formation + Delta-G solvation = -8.161339 kcal Electronic energy + Delta-G solvation = -29402.717635 eV Core-core repulsion = 25303.516953 eV Total energy + Delta-G solvation = -4099.200682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.78994 -40.00310 -38.74682 -36.34381 -35.55379 -35.26544 -32.86383 -31.95889 -31.41797 -30.41262 -29.80911 -27.28691 -26.88879 -25.84461 -25.10383 -23.12159 -22.70126 -21.70755 -21.10945 -20.21918 -19.77157 -17.62843 -17.53374 -16.85093 -16.68350 -16.47728 -15.95005 -15.58510 -15.52197 -15.13312 -14.89128 -14.66537 -14.13309 -14.04370 -13.96189 -13.63127 -13.43204 -13.29411 -13.26043 -13.10146 -12.88872 -12.81654 -12.58983 -12.46149 -12.30425 -11.81249 -11.71876 -11.28668 -11.23606 -10.93255 -10.80314 -10.73474 -10.45831 -10.37876 -10.14683 -9.91106 -9.84040 -9.70733 -9.61425 -9.34714 -9.20225 -8.71340 -8.43978 -6.67397 -5.69209 -3.13464 0.44399 0.95932 2.17682 2.50436 2.84652 2.98656 3.42177 3.48176 3.50535 3.50914 4.06790 4.28487 4.35807 4.40883 4.53142 4.55126 4.72476 4.80072 4.84641 4.90263 4.99773 5.11561 5.16436 5.22978 5.28215 5.36036 5.41200 5.43510 5.48575 5.51977 5.59372 5.78458 5.82643 5.87603 5.96493 6.03146 6.06501 6.10869 6.15482 6.44097 6.47771 6.61065 6.80340 6.85418 6.99408 7.05106 7.30765 7.43210 7.72566 7.73186 7.87060 8.10308 8.46928 9.29973 9.93161 10.42254 11.37605 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.001753 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.504039 B =15968.269858 C =16768.639595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.727 5.727 5 C 0.158 3.842 6 C -0.094 4.094 7 C -0.110 4.110 8 C -0.105 4.105 9 C -0.116 4.116 10 C 0.552 3.448 11 O -0.528 6.528 12 N -0.606 5.606 13 C 0.060 3.940 14 C 0.115 3.885 15 C -0.151 4.151 16 C 0.155 3.845 17 N -0.603 5.603 18 C 0.164 3.836 19 C -0.251 4.251 20 H 0.068 0.932 21 C -0.001 4.001 22 N -0.911 5.911 23 Si 0.904 3.096 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C -0.063 4.063 28 C -0.107 4.107 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.404 0.596 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.034 0.966 45 H 0.048 0.952 46 H 0.018 0.982 47 H 0.054 0.946 48 H -0.009 1.009 49 H 0.252 0.748 50 H 0.137 0.863 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.523 18.882 10.382 31.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.425 6.425 4 N -0.380 5.380 5 C 0.035 3.965 6 C -0.095 4.095 7 C -0.129 4.129 8 C -0.123 4.123 9 C -0.119 4.119 10 C 0.340 3.660 11 O -0.405 6.405 12 N -0.338 5.338 13 C -0.083 4.083 14 C -0.007 4.007 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.325 5.325 18 C 0.020 3.980 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.198 4.198 22 N -0.556 5.556 23 Si 0.734 3.266 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.082 4.082 28 C -0.125 4.125 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.238 0.762 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.010 0.990 49 H 0.062 0.938 50 H 0.155 0.845 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.046 19.141 9.862 30.817 hybrid contribution 0.176 -0.395 -0.916 1.013 sum -21.870 18.746 8.946 30.162 Atomic orbital electron populations 1.21888 0.91427 1.05045 1.04900 1.20873 0.90709 0.83315 0.75417 1.90745 1.70830 1.31412 1.49508 1.46187 1.06936 1.09057 1.75863 1.20227 0.80047 0.92707 1.03507 1.20018 1.00307 0.95430 0.93699 1.21036 0.99443 0.94732 0.97658 1.21982 0.97179 0.94871 0.98263 1.20076 1.02819 0.94489 0.94511 1.18345 0.78714 0.86995 0.81962 1.90816 1.57594 1.56432 1.35631 1.47807 1.48754 1.15747 1.21541 1.22451 1.01833 0.95396 0.88632 1.21648 0.96231 0.81504 1.01285 1.22605 0.94044 1.01908 1.00641 1.20619 0.88520 0.92621 0.95551 1.43877 1.00513 1.83570 1.04546 1.20748 0.88403 0.96651 0.92237 1.19239 0.98814 1.37526 0.82489 0.91443 1.25019 0.98023 0.98938 0.97849 1.70072 1.07147 1.44776 1.33624 0.86251 0.77668 0.77165 0.85494 1.21561 1.21739 1.20421 1.21294 0.95110 0.93935 0.97838 1.21065 0.99198 0.94481 0.97795 0.88752 0.88775 0.90065 0.76175 0.90334 0.90323 0.85244 0.83541 0.92209 0.90757 0.89488 0.90720 0.89747 0.91831 0.92861 0.94727 0.93402 0.96387 0.92683 0.99013 0.93821 0.84537 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.30 36.00 0.37 -0.22 16 2 C 0.51 3.71 7.94 -10.99 -0.09 3.62 16 3 O -0.55 -6.58 17.10 5.56 0.10 -6.48 16 4 N -0.73 -4.04 5.55 -61.48 -0.34 -4.38 16 5 C 0.16 1.02 5.79 -5.19 -0.03 0.99 16 6 C -0.09 -0.63 5.25 -104.53 -0.55 -1.18 16 7 C -0.11 -0.70 9.68 -39.63 -0.38 -1.09 16 8 C -0.10 -0.81 7.45 -39.18 -0.29 -1.11 16 9 C -0.12 -1.27 5.49 -104.97 -0.58 -1.84 16 10 C 0.55 7.90 7.45 -12.33 -0.09 7.81 16 11 O -0.53 -9.72 16.29 5.32 0.09 -9.64 16 12 N -0.61 -7.65 2.87 -182.69 -0.52 -8.18 16 13 C 0.06 0.50 8.79 59.84 0.53 1.02 16 14 C 0.12 1.64 5.45 -4.04 -0.02 1.62 16 15 C -0.15 -2.70 5.86 -26.73 -0.16 -2.86 16 16 C 0.16 3.24 5.68 -4.04 -0.02 3.21 16 17 N -0.60 -15.65 2.92 -181.12 -0.53 -16.18 16 18 C 0.16 4.15 8.99 59.85 0.54 4.68 16 19 C -0.25 -7.17 9.66 -15.06 -0.15 -7.32 16 20 H 0.07 1.92 7.86 -52.49 -0.41 1.51 16 21 C 0.00 -0.02 5.07 -17.43 -0.09 -0.11 16 22 N -0.91 -27.22 10.73 55.49 0.60 -26.63 16 23 Si 0.90 22.60 29.57 -169.99 -5.03 17.57 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C -0.06 -0.65 9.60 -39.19 -0.38 -1.03 16 28 C -0.11 -0.84 9.68 -39.64 -0.38 -1.22 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.40 1.42 8.46 -40.82 -0.35 1.07 16 33 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.15 0.87 4.70 -52.49 -0.25 0.63 16 37 H 0.06 0.36 7.39 -51.93 -0.38 -0.03 16 38 H 0.07 0.61 8.10 -51.92 -0.42 0.19 16 39 H 0.09 0.64 4.77 -51.93 -0.25 0.40 16 40 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.08 1.32 7.37 -51.93 -0.38 0.94 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 44 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 45 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 46 H 0.02 0.48 7.78 -51.93 -0.40 0.07 16 47 H 0.05 1.51 6.79 -51.93 -0.35 1.15 16 48 H -0.01 -0.19 8.09 -51.93 -0.42 -0.61 16 49 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.14 1.52 7.94 -52.49 -0.42 1.10 16 51 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 419.22 15.07 6.32 6.32 Total: -1.00 -37.10 419.22 -9.32 -46.42 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -8.22 Total: -3.82 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.77 Total: 4.99 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.80 Total: -55.36 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.18 Total: -16.12 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -37.10 -9.32 -46.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570201031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.258 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds