Wall clock time and date at job start Wed Apr 1 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00059 * 2 1 4 4 N 1.34778 * 119.99855 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00011 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.46927 * 180.02562 * 5 4 2 7 7 C 1.38369 * 119.85286 * 269.72479 * 6 5 4 8 8 C 1.37963 * 120.14280 * 179.72484 * 7 6 5 9 9 C 1.39572 * 119.85050 * 0.54962 * 8 7 6 10 10 C 1.47849 * 120.14146 * 179.70354 * 9 8 7 11 11 O 1.21553 * 119.99935 * 149.11938 * 10 9 8 12 12 N 1.34775 * 119.99779 * 329.12432 * 10 9 8 13 13 C 1.46494 * 120.00352 * 3.77463 * 12 10 9 14 14 C 1.46501 * 119.99687 * 183.77299 * 12 10 9 15 15 C 1.53002 * 109.47085 * 89.99868 * 14 12 10 16 16 C 1.53003 * 109.47240 * 179.97438 * 15 14 12 17 17 N 1.46503 * 109.47135 * 180.02562 * 16 15 14 18 18 C 1.46500 * 119.99949 * 90.00331 * 17 16 15 19 19 C 1.36930 * 119.99666 * 270.00208 * 17 16 15 20 20 H 1.07999 * 120.00551 * 23.33245 * 19 17 16 21 21 C 1.38820 * 120.00010 * 203.33094 * 19 17 16 22 22 N 1.31617 * 119.99537 * 12.08742 * 21 19 17 23 23 Si 1.86798 * 120.00221 * 192.08458 * 21 19 17 24 24 H 1.48500 * 109.46878 * 90.00027 * 23 21 19 25 25 H 1.48497 * 109.47191 * 209.99819 * 23 21 19 26 26 H 1.48493 * 109.47251 * 330.00194 * 23 21 19 27 27 C 1.39579 * 119.71563 * 359.72239 * 9 8 7 28 28 C 1.37949 * 119.84965 * 0.02562 * 27 9 8 29 29 H 1.09000 * 109.46972 * 270.00334 * 1 2 3 30 30 H 1.08997 * 109.47332 * 29.99959 * 1 2 3 31 31 H 1.08995 * 109.47486 * 150.00677 * 1 2 3 32 32 H 0.97003 * 120.00146 * 359.97438 * 4 2 1 33 33 H 1.08996 * 109.47308 * 60.00410 * 5 4 2 34 34 H 1.08998 * 109.47007 * 300.00017 * 5 4 2 35 35 H 1.07996 * 119.92299 * 0.02562 * 7 6 5 36 36 H 1.07998 * 120.07093 * 180.25562 * 8 7 6 37 37 H 1.09002 * 109.47218 * 93.81382 * 13 12 10 38 38 H 1.09008 * 109.47288 * 213.81426 * 13 12 10 39 39 H 1.09000 * 109.47184 * 333.81347 * 13 12 10 40 40 H 1.09001 * 109.47202 * 209.99733 * 14 12 10 41 41 H 1.08994 * 109.47467 * 330.00141 * 14 12 10 42 42 H 1.08992 * 109.47096 * 300.00259 * 15 14 12 43 43 H 1.09008 * 109.46937 * 59.99940 * 15 14 12 44 44 H 1.09001 * 109.47376 * 300.00067 * 16 15 14 45 45 H 1.09000 * 109.47093 * 59.99931 * 16 15 14 46 46 H 1.08993 * 109.47233 * 87.11233 * 18 17 16 47 47 H 1.08995 * 109.46957 * 207.11883 * 18 17 16 48 48 H 1.08996 * 109.46907 * 327.11399 * 18 17 16 49 49 H 0.97007 * 120.00105 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.07077 * 179.97438 * 27 9 8 51 51 H 1.08005 * 119.92785 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0001 7 6 4.3835 -3.2353 1.2002 8 6 4.8379 -4.5379 1.2073 9 6 5.0711 -5.1990 0.0004 10 6 5.5643 -6.5928 0.0005 11 8 5.2572 -7.3462 -0.9025 12 7 6.3543 -7.0279 1.0020 13 6 6.6569 -6.1462 2.1321 14 6 6.9105 -8.3826 0.9604 15 6 8.2638 -8.3566 0.2472 16 6 8.8450 -9.7713 0.2043 17 7 10.1411 -9.7463 -0.4782 18 6 11.3694 -9.5292 0.2902 19 6 10.2044 -9.9260 -1.8341 20 1 9.3417 -9.7132 -2.4480 21 6 11.3776 -10.3815 -2.4199 22 7 12.3438 -10.8651 -1.6682 23 14 11.5851 -10.3083 -4.2749 24 1 12.1937 -9.0078 -4.6539 25 1 12.4688 -11.4163 -4.7183 26 1 10.2578 -10.4425 -4.9271 27 6 4.8369 -4.5385 -1.2067 28 6 4.3776 -3.2377 -1.1998 29 1 -0.3633 0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 1.6958 -2.0073 0.0013 33 1 4.0095 -0.6529 0.8894 34 1 4.0088 -0.6540 -0.8905 35 1 4.2065 -2.7212 2.1333 36 1 5.0174 -5.0433 2.1447 37 1 5.9457 -6.3305 2.9373 38 1 7.6680 -6.3453 2.4878 39 1 6.5824 -5.1069 1.8123 40 1 7.0427 -8.7524 1.9772 41 1 6.2280 -9.0391 0.4208 42 1 8.1316 -7.9867 -0.7695 43 1 8.9464 -7.7000 0.7868 44 1 8.9772 -10.1408 1.2212 45 1 8.1626 -10.4282 -0.3351 46 1 11.7386 -10.4847 0.6627 47 1 12.1235 -9.0734 -0.3514 48 1 11.1599 -8.8679 1.1309 49 1 13.1638 -11.1831 -2.0775 50 1 5.0157 -5.0443 -2.1440 51 1 4.1964 -2.7253 -2.1331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570201031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:02 Heat of formation + Delta-G solvation = -32.984396 kcal Electronic energy + Delta-G solvation = -29403.794044 eV Core-core repulsion = 25303.516953 eV Total energy + Delta-G solvation = -4100.277091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.63017 -40.66367 -39.54963 -37.95698 -36.86353 -36.02112 -34.28270 -33.02333 -32.26626 -31.65318 -30.53390 -28.21583 -27.97176 -27.70810 -26.33291 -24.21957 -23.62758 -22.70711 -21.96531 -21.64216 -20.72281 -18.79067 -18.39545 -18.13741 -17.61251 -17.30902 -16.94587 -16.63786 -16.44062 -16.15450 -15.93659 -15.81564 -15.54809 -15.14277 -14.72427 -14.67412 -14.57140 -14.50344 -14.23718 -14.04527 -13.86230 -13.71718 -13.35717 -13.26220 -13.10071 -12.90979 -12.89788 -12.75581 -12.58006 -12.53517 -12.49876 -12.25971 -12.12023 -11.91515 -11.88957 -11.44089 -11.13046 -10.95053 -10.65532 -10.16531 -10.01922 -9.88807 -9.70159 -8.76793 -7.88461 -5.35024 -0.26687 0.33565 1.41688 1.42369 1.52066 1.61857 1.64636 1.96299 2.34305 2.47554 2.83011 3.25573 3.38082 3.62000 3.68481 3.76059 3.91917 3.99368 4.05557 4.20691 4.23214 4.33668 4.36825 4.50250 4.51432 4.57047 4.60795 4.64861 4.68128 4.70146 4.73686 4.79998 4.86231 4.90346 4.92284 5.00566 5.11636 5.18432 5.23098 5.25250 5.33297 5.38302 5.45870 5.47863 5.54523 5.57847 5.67694 5.82162 6.31297 6.32870 6.55076 7.06417 7.13205 7.24282 7.86027 8.27904 9.16083 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.001753 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.504039 B =15968.269858 C =16768.639595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.505 3.495 3 O -0.602 6.602 4 N -0.716 5.716 5 C 0.160 3.840 6 C -0.080 4.080 7 C -0.099 4.099 8 C -0.094 4.094 9 C -0.137 4.137 10 C 0.543 3.457 11 O -0.586 6.586 12 N -0.605 5.605 13 C 0.051 3.949 14 C 0.123 3.877 15 C -0.130 4.130 16 C 0.152 3.848 17 N -0.622 5.622 18 C 0.178 3.822 19 C -0.263 4.263 20 H 0.058 0.942 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.285 1.285 25 H -0.288 1.288 26 H -0.274 1.274 27 C -0.083 4.083 28 C -0.105 4.105 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.416 0.584 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.034 0.966 46 H -0.003 1.003 47 H 0.025 0.975 48 H 0.030 0.970 49 H 0.250 0.750 50 H 0.114 0.886 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.175 20.462 12.743 34.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.294 3.706 3 O -0.483 6.483 4 N -0.369 5.369 5 C 0.037 3.963 6 C -0.081 4.081 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.140 4.140 10 C 0.333 3.667 11 O -0.467 6.467 12 N -0.336 5.336 13 C -0.090 4.090 14 C 0.000 4.000 15 C -0.171 4.171 16 C 0.026 3.974 17 N -0.346 5.346 18 C 0.033 3.967 19 C -0.394 4.394 20 H 0.076 0.924 21 C -0.246 4.246 22 N -0.584 5.584 23 Si 0.794 3.206 24 H -0.212 1.212 25 H -0.214 1.214 26 H -0.199 1.199 27 C -0.102 4.102 28 C -0.123 4.123 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.253 0.747 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.179 0.821 36 H 0.188 0.812 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.016 0.984 47 H 0.044 0.956 48 H 0.048 0.952 49 H 0.059 0.941 50 H 0.132 0.868 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.731 20.716 12.273 33.808 hybrid contribution 0.641 -0.838 -1.587 1.906 sum -23.090 19.878 10.686 32.287 Atomic orbital electron populations 1.21907 0.88357 1.06069 1.06247 1.21558 0.92197 0.82681 0.74121 1.90723 1.72124 1.33283 1.52183 1.46117 1.06616 1.09376 1.74794 1.20157 0.80655 0.92169 1.03325 1.20067 0.99247 0.95288 0.93512 1.21358 0.97697 0.94035 0.98621 1.22178 0.96091 0.95193 0.97709 1.19932 1.04994 0.93033 0.96074 1.18981 0.78391 0.88024 0.81319 1.90774 1.59956 1.58155 1.37847 1.47894 1.47719 1.15624 1.22346 1.22802 1.03263 0.95111 0.87824 1.21447 0.93444 0.82650 1.02418 1.22282 0.96336 0.99583 0.98889 1.20795 0.86238 0.94206 0.96197 1.44144 1.02373 1.83897 1.04140 1.20519 0.87610 0.96050 0.92507 1.19432 0.98658 1.37153 0.84122 0.92408 1.25740 0.97844 0.99072 1.01979 1.70211 1.07390 1.45682 1.35095 0.85289 0.77608 0.77087 0.80636 1.21158 1.21445 1.19919 1.21234 0.96770 0.95108 0.97128 1.21137 0.98724 0.93435 0.99042 0.87110 0.89150 0.87651 0.74703 0.90033 0.91186 0.82106 0.81182 0.88737 0.90121 0.88419 0.86942 0.91756 0.95982 0.92154 0.91951 0.94711 0.98423 0.95606 0.95189 0.94100 0.86812 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.30 71.23 0.73 -0.01 16 2 C 0.51 6.52 7.94 87.66 0.70 7.22 16 3 O -0.60 -14.15 17.10 -3.03 -0.05 -14.20 16 4 N -0.72 -6.28 5.55 -466.80 -2.59 -8.87 16 5 C 0.16 1.73 5.79 85.63 0.50 2.22 16 6 C -0.08 -0.89 5.25 -19.80 -0.10 -0.99 16 7 C -0.10 -0.89 9.68 22.24 0.22 -0.68 16 8 C -0.09 -1.17 7.45 22.53 0.17 -1.00 16 9 C -0.14 -2.92 5.49 -20.09 -0.11 -3.03 16 10 C 0.54 15.78 7.45 86.79 0.65 16.43 16 11 O -0.59 -22.99 16.29 -3.88 -0.06 -23.05 16 12 N -0.61 -14.46 2.87 -850.19 -2.44 -16.90 16 13 C 0.05 0.66 8.79 127.77 1.12 1.78 16 14 C 0.12 3.37 5.45 86.38 0.47 3.84 16 15 C -0.13 -4.63 5.86 30.60 0.18 -4.46 16 16 C 0.15 6.32 5.68 86.38 0.49 6.81 16 17 N -0.62 -32.66 2.92 -726.94 -2.12 -34.78 16 18 C 0.18 8.99 8.99 127.77 1.15 10.14 16 19 C -0.26 -15.40 9.66 84.04 0.81 -14.59 16 20 H 0.06 3.42 7.86 -2.91 -0.02 3.39 16 21 C -0.05 -3.01 5.07 84.86 0.43 -2.58 16 22 N -0.94 -57.03 10.73 21.65 0.23 -56.80 16 23 Si 0.97 47.33 29.57 68.60 2.03 49.36 16 24 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 27 C -0.08 -1.77 9.60 22.52 0.22 -1.55 16 28 C -0.10 -1.55 9.68 22.23 0.22 -1.33 16 29 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.42 1.68 8.46 -92.71 -0.78 0.89 16 33 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 34 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 36 H 0.17 1.26 4.70 -2.91 -0.01 1.24 16 37 H 0.09 0.64 7.39 -2.39 -0.02 0.62 16 38 H 0.08 1.00 8.10 -2.38 -0.02 0.98 16 39 H 0.10 1.09 4.77 -2.39 -0.01 1.08 16 40 H 0.11 2.25 8.07 -2.39 -0.02 2.23 16 41 H 0.06 2.04 7.37 -2.39 -0.02 2.02 16 42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 45 H 0.03 1.51 8.04 -2.39 -0.02 1.50 16 46 H 0.00 -0.14 7.78 -2.39 -0.02 -0.16 16 47 H 0.03 1.41 6.79 -2.39 -0.02 1.40 16 48 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 49 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 50 H 0.11 2.84 7.94 -2.91 -0.02 2.82 16 51 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -85.67 419.22 2.96 -82.71 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.15 Total: 4.32 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 7.83 Total: 18.21 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -6.92 Total: -117.35 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.11 Total: -37.25 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -85.67 2.96 -82.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570201031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.728 kcal (2) G-P(sol) polarization free energy of solvation -85.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds