Wall clock time and date at job start Wed Apr 1 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00261 * 2 1 4 4 C 1.50705 * 109.47135 * 293.95398 * 3 2 1 5 5 H 1.08003 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00060 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00076 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00003 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46964 * 90.00327 * 8 6 4 10 10 H 1.48497 * 109.47287 * 210.00070 * 8 6 4 11 11 H 1.48499 * 109.47283 * 330.00387 * 8 6 4 12 12 C 1.46897 * 110.99829 * 123.95617 * 2 1 3 13 13 C 1.53003 * 109.47421 * 164.01311 * 12 2 1 14 14 H 1.08992 * 109.47158 * 58.50544 * 13 12 2 15 15 O 1.42901 * 109.46690 * 298.50431 * 13 12 2 16 16 C 1.52997 * 109.47041 * 178.50908 * 13 12 2 17 17 N 1.46906 * 109.46564 * 184.99896 * 16 13 12 18 18 C 1.46906 * 110.99732 * 179.97438 * 17 16 13 19 19 H 1.09005 * 109.39328 * 324.81613 * 18 17 16 20 20 C 1.52912 * 109.39677 * 205.00022 * 18 17 16 21 21 C 1.50661 * 109.52350 * 288.43276 * 20 18 17 22 22 C 1.38083 * 120.18058 * 145.78514 * 21 20 18 23 23 C 1.38287 * 120.02645 * 179.71734 * 22 21 20 24 24 C 1.38309 * 120.14468 * 0.52856 * 23 22 21 25 25 C 1.38105 * 120.09032 * 359.74787 * 24 23 22 26 26 C 1.38851 * 119.84403 * 326.05384 * 21 20 18 27 27 N 1.39816 * 119.94029 * 0.03598 * 26 21 20 28 28 C 1.46502 * 119.77450 * 198.45593 * 27 26 21 29 29 C 1.34566 * 120.45997 * 18.48278 * 27 26 21 30 30 O 1.21286 * 119.62298 * 180.80241 * 29 27 26 31 31 H 1.08993 * 109.47322 * 301.53420 * 1 2 3 32 32 H 1.09006 * 109.47108 * 61.53518 * 1 2 3 33 33 H 1.09003 * 109.47575 * 181.52739 * 1 2 3 34 34 H 1.08998 * 109.46986 * 53.94937 * 3 2 1 35 35 H 1.08993 * 109.47740 * 173.95151 * 3 2 1 36 36 H 0.97000 * 120.00069 * 180.02562 * 7 6 4 37 37 H 1.08997 * 109.47668 * 44.01030 * 12 2 1 38 38 H 1.09005 * 109.47297 * 284.01086 * 12 2 1 39 39 H 0.96699 * 114.00256 * 299.99807 * 15 13 12 40 40 H 1.09001 * 109.47637 * 65.00231 * 16 13 12 41 41 H 1.08996 * 109.47432 * 304.99188 * 16 13 12 42 42 H 1.00899 * 111.00075 * 303.94468 * 17 16 13 43 43 H 1.09000 * 109.46038 * 168.41593 * 20 18 17 44 44 H 1.08994 * 109.46018 * 48.45034 * 20 18 17 45 45 H 1.07996 * 119.99108 * 0.02562 * 22 21 20 46 46 H 1.07995 * 119.92671 * 180.24056 * 23 22 21 47 47 H 1.08000 * 119.95367 * 179.72430 * 24 23 22 48 48 H 1.07998 * 120.05490 * 179.97438 * 25 24 23 49 49 H 1.09004 * 109.47435 * 180.02562 * 28 27 26 50 50 H 1.09004 * 109.46924 * 300.02132 * 28 27 26 51 51 H 1.08999 * 109.46815 * 60.01903 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0268 3.3494 -1.5285 7 7 2.7121 4.0018 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.2704 4.8667 -2.9971 10 1 2.6252 5.1882 -3.4790 11 1 1.5007 3.1709 -4.2184 12 6 1.9954 -0.7660 1.1375 13 6 3.4728 -1.0840 0.8985 14 1 4.0281 -0.1550 0.7699 15 8 3.6033 -1.8840 -0.2784 16 6 4.0306 -1.8496 2.0999 17 7 5.4753 -2.0502 1.9248 18 6 6.0467 -2.7833 3.0624 19 1 5.5326 -2.4892 3.9775 20 6 7.5339 -2.4501 3.1859 21 6 8.2908 -3.0992 2.0565 22 6 9.3908 -2.4712 1.5067 23 6 10.0867 -3.0726 0.4740 24 6 9.6771 -4.2986 -0.0181 25 6 8.5743 -4.9289 0.5240 26 6 7.8767 -4.3298 1.5645 27 7 6.7590 -4.9621 2.1175 28 6 6.5549 -6.3970 1.9037 29 6 5.8691 -4.2618 2.8444 30 8 4.9126 -4.8285 3.3294 31 1 -0.3633 0.5374 0.8758 32 1 -0.3634 0.4898 -0.9035 33 1 -0.3634 -1.0273 0.0274 34 1 1.5611 1.9273 0.8309 35 1 3.0797 1.3444 0.1083 36 1 2.9860 4.9182 -0.7767 37 1 1.4356 -1.6957 1.2399 38 1 1.8933 -0.1782 2.0498 39 1 3.1333 -2.7279 -0.2346 40 1 3.5358 -2.8179 2.1754 41 1 3.8510 -1.2778 3.0104 42 1 5.6720 -2.5220 1.0548 43 1 7.9118 -2.8229 4.1379 44 1 7.6690 -1.3695 3.1399 45 1 9.7108 -1.5122 1.8865 46 1 10.9491 -2.5818 0.0478 47 1 10.2202 -4.7634 -0.8276 48 1 8.2548 -5.8860 0.1390 49 1 5.6394 -6.7124 2.4044 50 1 6.4720 -6.5970 0.8354 51 1 7.4013 -6.9492 2.3122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650157459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:32 Heat of formation + Delta-G solvation = -43.206277 kcal Electronic energy + Delta-G solvation = -31113.025161 eV Core-core repulsion = 27012.304816 eV Total energy + Delta-G solvation = -4100.720345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58742 -39.01838 -38.18383 -36.35434 -35.83649 -35.27579 -33.03503 -32.43536 -30.47639 -29.97083 -28.48104 -27.80636 -27.23720 -25.43502 -23.86616 -23.19549 -23.11299 -22.05683 -21.54129 -20.03281 -19.18585 -18.22787 -17.16269 -16.62380 -16.47695 -16.19548 -15.91831 -15.49420 -15.11235 -14.79704 -14.71544 -14.67446 -14.55243 -14.24664 -13.97693 -13.68012 -13.49561 -13.39706 -13.11325 -12.73619 -12.71444 -12.55489 -12.41707 -12.21759 -12.03040 -11.87138 -11.51025 -11.36514 -11.24037 -11.13045 -10.88856 -10.69886 -10.62677 -10.60921 -10.45192 -10.30233 -9.71829 -9.60370 -9.10275 -9.06152 -8.60932 -8.37241 -8.20630 -7.16616 -5.96929 -3.97158 0.92584 1.08202 2.17706 2.42641 3.35798 3.41806 3.47178 3.50730 3.81724 3.96202 4.37015 4.44444 4.48093 4.65945 4.70714 4.76239 4.89567 4.92613 4.98005 5.03436 5.11047 5.17761 5.27721 5.34355 5.36367 5.37189 5.38966 5.43770 5.59388 5.59877 5.73739 5.76473 5.81091 5.82371 6.07572 6.07814 6.12660 6.26668 6.29950 6.37253 6.50017 6.58215 6.70402 6.75896 6.95517 7.10820 7.33242 7.36446 7.58794 7.84788 8.07077 8.15373 8.25657 8.60793 9.09782 9.66360 11.14180 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.002562 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.053444 B =10924.822811 C =12097.252787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.115 0.885 15 O -0.541 6.541 16 C 0.022 3.978 17 N -0.652 5.652 18 C 0.076 3.924 19 H 0.118 0.882 20 C -0.072 4.072 21 C -0.109 4.109 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.093 4.093 25 C -0.150 4.150 26 C 0.153 3.847 27 N -0.552 5.552 28 C 0.068 3.932 29 C 0.488 3.512 30 O -0.524 6.524 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.042 0.958 34 H -0.012 1.012 35 H 0.033 0.967 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.359 0.641 40 H 0.037 0.963 41 H 0.085 0.915 42 H 0.352 0.648 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.093 0.907 50 H 0.069 0.931 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.366 -19.805 7.962 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.132 0.868 15 O -0.344 6.344 16 C -0.107 4.107 17 N -0.285 5.285 18 C -0.037 4.037 19 H 0.136 0.864 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.098 4.098 23 C -0.157 4.157 24 C -0.112 4.112 25 C -0.170 4.170 26 C 0.059 3.941 27 N -0.276 5.276 28 C -0.074 4.074 29 C 0.275 3.725 30 O -0.398 6.398 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.006 0.994 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.204 0.796 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.172 0.828 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.149 0.851 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.144 0.856 49 H 0.112 0.888 50 H 0.087 0.913 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.506 -19.073 7.929 25.240 hybrid contribution -1.143 -0.499 -0.085 1.250 sum 13.362 -19.572 7.844 24.963 Atomic orbital electron populations 1.22192 0.88886 0.98839 1.00928 1.62035 1.06477 1.17915 1.39104 1.19785 0.95609 0.81392 0.96507 1.21148 1.34562 0.96775 1.01691 0.91962 1.24979 0.95359 0.97386 0.96945 1.69959 1.38516 1.11358 1.34104 0.86511 0.77883 0.79205 0.83904 1.20859 1.21265 1.19769 1.22640 0.95603 0.98229 0.93784 1.21999 0.94998 0.94539 0.82871 0.86757 1.86697 1.75165 1.33291 1.39251 1.22885 0.87089 0.99804 1.00965 1.60684 1.13636 1.50210 1.03943 1.21899 0.97789 0.85889 0.98100 0.86435 1.20609 0.91223 1.02872 0.96296 1.19523 0.97810 0.94339 0.99532 1.20889 0.93853 0.99372 0.95654 1.21142 1.00823 0.95877 0.97819 1.20967 0.95864 0.95209 0.99151 1.20785 0.97871 1.01654 0.96729 1.17669 0.88546 0.93239 0.94682 1.45416 1.22214 1.09864 1.50107 1.21885 1.03865 0.79133 1.02468 1.22076 0.81794 0.91283 0.77338 1.90719 1.29807 1.71427 1.47858 0.97138 0.90792 0.93951 0.99400 0.94893 0.93010 0.92264 0.94957 0.79602 0.94457 0.89680 0.82757 0.89748 0.87707 0.85146 0.85689 0.85602 0.85601 0.88810 0.91281 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.32 60.06 0.56 1.36 16 2 N -0.53 -11.73 4.60 -244.38 -1.12 -12.86 16 3 C 0.19 5.10 4.57 -4.98 -0.02 5.08 16 4 C -0.50 -14.51 8.54 -34.44 -0.29 -14.80 16 5 H 0.06 1.79 7.10 -52.48 -0.37 1.42 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.03 0.49 4.63 -3.82 -0.02 0.47 16 13 C 0.12 1.94 3.23 -26.73 -0.09 1.86 16 14 H 0.11 2.30 6.55 -51.93 -0.34 1.96 16 15 O -0.54 -9.35 12.75 -35.23 -0.45 -9.80 16 16 C 0.02 0.30 5.15 -3.82 -0.02 0.28 16 17 N -0.65 -8.27 6.12 -108.10 -0.66 -8.93 16 18 C 0.08 0.83 2.72 -69.01 -0.19 0.64 16 19 H 0.12 1.22 7.80 -51.93 -0.40 0.82 16 20 C -0.07 -0.65 5.63 -27.95 -0.16 -0.81 16 21 C -0.11 -1.05 5.47 -104.47 -0.57 -1.62 16 22 C -0.08 -0.68 9.69 -39.62 -0.38 -1.07 16 23 C -0.14 -1.10 10.04 -39.54 -0.40 -1.49 16 24 C -0.09 -0.73 10.04 -39.60 -0.40 -1.12 16 25 C -0.15 -1.28 9.34 -39.40 -0.37 -1.65 16 26 C 0.15 1.51 6.31 -83.76 -0.53 0.99 16 27 N -0.55 -5.75 3.09 -121.00 -0.37 -6.12 16 28 C 0.07 0.56 9.67 59.85 0.58 1.14 16 29 C 0.49 5.95 6.51 -11.18 -0.07 5.87 16 30 O -0.52 -7.85 16.25 5.55 0.09 -7.76 16 31 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 32 H 0.07 1.57 6.90 -51.93 -0.36 1.21 16 33 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 34 H -0.01 -0.33 8.11 -51.93 -0.42 -0.75 16 35 H 0.03 0.93 6.38 -51.93 -0.33 0.60 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.06 0.93 7.88 -51.93 -0.41 0.52 16 38 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 39 H 0.36 4.93 9.05 45.56 0.41 5.34 16 40 H 0.04 0.51 7.88 -51.93 -0.41 0.10 16 41 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 42 H 0.35 4.82 7.94 -39.29 -0.31 4.51 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 47 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.13 0.86 6.65 -52.49 -0.35 0.51 16 49 H 0.09 0.87 6.86 -51.93 -0.36 0.51 16 50 H 0.07 0.46 7.30 -51.93 -0.38 0.08 16 51 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 408.69 15.07 6.16 6.16 Total: -1.00 -34.14 408.69 -10.48 -44.62 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.37 Total: 7.38 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.46 Total: -3.39 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.42 Total: -54.29 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.36 Total: -17.56 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.14 -10.48 -44.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650157459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.412 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds