Wall clock time and date at job start Wed Apr 1 2020 05:35:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.46894 * 111.00261 * 2 1
4 4 C 1.50705 * 109.47135 * 293.95398 * 3 2 1
5 5 H 1.08003 * 119.99797 * 359.97438 * 4 3 2
6 6 C 1.37872 * 120.00060 * 179.97438 * 4 3 2
7 7 N 1.31520 * 120.00076 * 0.02562 * 6 4 3
8 8 Si 1.86797 * 120.00003 * 179.97438 * 6 4 3
9 9 H 1.48506 * 109.46964 * 90.00327 * 8 6 4
10 10 H 1.48497 * 109.47287 * 210.00070 * 8 6 4
11 11 H 1.48499 * 109.47283 * 330.00387 * 8 6 4
12 12 C 1.46897 * 110.99829 * 123.95617 * 2 1 3
13 13 C 1.53003 * 109.47421 * 164.01311 * 12 2 1
14 14 H 1.08992 * 109.47158 * 58.50544 * 13 12 2
15 15 O 1.42901 * 109.46690 * 298.50431 * 13 12 2
16 16 C 1.52997 * 109.47041 * 178.50908 * 13 12 2
17 17 N 1.46906 * 109.46564 * 184.99896 * 16 13 12
18 18 C 1.46906 * 110.99732 * 179.97438 * 17 16 13
19 19 H 1.09005 * 109.39328 * 324.81613 * 18 17 16
20 20 C 1.52912 * 109.39677 * 205.00022 * 18 17 16
21 21 C 1.50661 * 109.52350 * 288.43276 * 20 18 17
22 22 C 1.38083 * 120.18058 * 145.78514 * 21 20 18
23 23 C 1.38287 * 120.02645 * 179.71734 * 22 21 20
24 24 C 1.38309 * 120.14468 * 0.52856 * 23 22 21
25 25 C 1.38105 * 120.09032 * 359.74787 * 24 23 22
26 26 C 1.38851 * 119.84403 * 326.05384 * 21 20 18
27 27 N 1.39816 * 119.94029 * 0.03598 * 26 21 20
28 28 C 1.46502 * 119.77450 * 198.45593 * 27 26 21
29 29 C 1.34566 * 120.45997 * 18.48278 * 27 26 21
30 30 O 1.21286 * 119.62298 * 180.80241 * 29 27 26
31 31 H 1.08993 * 109.47322 * 301.53420 * 1 2 3
32 32 H 1.09006 * 109.47108 * 61.53518 * 1 2 3
33 33 H 1.09003 * 109.47575 * 181.52739 * 1 2 3
34 34 H 1.08998 * 109.46986 * 53.94937 * 3 2 1
35 35 H 1.08993 * 109.47740 * 173.95151 * 3 2 1
36 36 H 0.97000 * 120.00069 * 180.02562 * 7 6 4
37 37 H 1.08997 * 109.47668 * 44.01030 * 12 2 1
38 38 H 1.09005 * 109.47297 * 284.01086 * 12 2 1
39 39 H 0.96699 * 114.00256 * 299.99807 * 15 13 12
40 40 H 1.09001 * 109.47637 * 65.00231 * 16 13 12
41 41 H 1.08996 * 109.47432 * 304.99188 * 16 13 12
42 42 H 1.00899 * 111.00075 * 303.94468 * 17 16 13
43 43 H 1.09000 * 109.46038 * 168.41593 * 20 18 17
44 44 H 1.08994 * 109.46018 * 48.45034 * 20 18 17
45 45 H 1.07996 * 119.99108 * 0.02562 * 22 21 20
46 46 H 1.07995 * 119.92671 * 180.24056 * 23 22 21
47 47 H 1.08000 * 119.95367 * 179.72430 * 24 23 22
48 48 H 1.07998 * 120.05490 * 179.97438 * 25 24 23
49 49 H 1.09004 * 109.47435 * 180.02562 * 28 27 26
50 50 H 1.09004 * 109.46924 * 300.02132 * 28 27 26
51 51 H 1.08999 * 109.46815 * 60.01903 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 -1.2985
5 1 1.0746 1.5112 -2.0488
6 6 2.0268 3.3494 -1.5285
7 7 2.7121 4.0018 -0.6150
8 14 1.5831 4.1867 -3.1383
9 1 0.2704 4.8667 -2.9971
10 1 2.6252 5.1882 -3.4790
11 1 1.5007 3.1709 -4.2184
12 6 1.9954 -0.7660 1.1375
13 6 3.4728 -1.0840 0.8985
14 1 4.0281 -0.1550 0.7699
15 8 3.6033 -1.8840 -0.2784
16 6 4.0306 -1.8496 2.0999
17 7 5.4753 -2.0502 1.9248
18 6 6.0467 -2.7833 3.0624
19 1 5.5326 -2.4892 3.9775
20 6 7.5339 -2.4501 3.1859
21 6 8.2908 -3.0992 2.0565
22 6 9.3908 -2.4712 1.5067
23 6 10.0867 -3.0726 0.4740
24 6 9.6771 -4.2986 -0.0181
25 6 8.5743 -4.9289 0.5240
26 6 7.8767 -4.3298 1.5645
27 7 6.7590 -4.9621 2.1175
28 6 6.5549 -6.3970 1.9037
29 6 5.8691 -4.2618 2.8444
30 8 4.9126 -4.8285 3.3294
31 1 -0.3633 0.5374 0.8758
32 1 -0.3634 0.4898 -0.9035
33 1 -0.3634 -1.0273 0.0274
34 1 1.5611 1.9273 0.8309
35 1 3.0797 1.3444 0.1083
36 1 2.9860 4.9182 -0.7767
37 1 1.4356 -1.6957 1.2399
38 1 1.8933 -0.1782 2.0498
39 1 3.1333 -2.7279 -0.2346
40 1 3.5358 -2.8179 2.1754
41 1 3.8510 -1.2778 3.0104
42 1 5.6720 -2.5220 1.0548
43 1 7.9118 -2.8229 4.1379
44 1 7.6690 -1.3695 3.1399
45 1 9.7108 -1.5122 1.8865
46 1 10.9491 -2.5818 0.0478
47 1 10.2202 -4.7634 -0.8276
48 1 8.2548 -5.8860 0.1390
49 1 5.6394 -6.7124 2.4044
50 1 6.4720 -6.5970 0.8354
51 1 7.4013 -6.9492 2.3122
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001650157459.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:35:31
Heat of formation + Delta-G solvation = -69.175129 kcal
Electronic energy + Delta-G solvation = -31114.151255 eV
Core-core repulsion = 27012.304816 eV
Total energy + Delta-G solvation = -4101.846439 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.39022 -39.83131 -39.53785 -37.64308 -36.63431 -36.61639 -34.59818 -33.91880
-31.42218 -30.85667 -29.66912 -29.14701 -28.50083 -26.82005 -25.31182 -24.40036
-23.89193 -22.95449 -22.71706 -21.73921 -19.94913 -19.02620 -18.61754 -18.04095
-17.48994 -17.34868 -17.18491 -16.60289 -16.41683 -16.15715 -15.95137 -15.59798
-15.40253 -15.35671 -15.23609 -14.95387 -14.80427 -14.35464 -14.15356 -13.97279
-13.78680 -13.61532 -13.44045 -13.26334 -13.16501 -13.10493 -12.89961 -12.81399
-12.61417 -12.54183 -12.32196 -12.18945 -12.15039 -11.98041 -11.55321 -11.45564
-11.32065 -11.19956 -10.85024 -10.58881 -9.73689 -9.58746 -8.96832 -8.92137
-8.18629 -6.27925 0.21295 0.44879 1.31886 1.40649 1.42713 1.54404
1.67089 2.41526 2.75357 2.87815 3.13198 3.13977 3.33900 3.60299
3.66832 3.73336 3.92671 3.97170 4.06377 4.11250 4.23575 4.27803
4.33342 4.38665 4.38826 4.46654 4.54148 4.55923 4.58409 4.66351
4.68201 4.72888 4.75824 4.76835 4.96012 5.05830 5.07972 5.12142
5.15982 5.22475 5.31394 5.43593 5.58799 5.65148 5.66146 5.71565
5.92351 6.04198 6.07851 6.20650 6.34252 6.63075 6.73072 6.86965
6.91996 7.41077 8.92587
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012430 B = 0.002562 C = 0.002314
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2252.053444 B =10924.822811 C =12097.252787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 N -0.542 5.542
3 C 0.210 3.790
4 C -0.523 4.523
5 H 0.059 0.941
6 C 0.001 3.999
7 N -0.933 5.933
8 Si 0.968 3.032
9 H -0.272 1.272
10 H -0.281 1.281
11 H -0.267 1.267
12 C 0.027 3.973
13 C 0.127 3.873
14 H 0.075 0.925
15 O -0.558 6.558
16 C 0.038 3.962
17 N -0.655 5.655
18 C 0.078 3.922
19 H 0.121 0.879
20 C -0.068 4.068
21 C -0.122 4.122
22 C -0.091 4.091
23 C -0.141 4.141
24 C -0.098 4.098
25 C -0.153 4.153
26 C 0.131 3.869
27 N -0.549 5.549
28 C 0.064 3.936
29 C 0.485 3.515
30 O -0.560 6.560
31 H 0.009 0.991
32 H 0.056 0.944
33 H 0.080 0.920
34 H -0.041 1.041
35 H 0.007 0.993
36 H 0.264 0.736
37 H 0.091 0.909
38 H 0.031 0.969
39 H 0.376 0.624
40 H 0.042 0.958
41 H 0.091 0.909
42 H 0.347 0.653
43 H 0.100 0.900
44 H 0.107 0.893
45 H 0.142 0.858
46 H 0.144 0.856
47 H 0.149 0.851
48 H 0.142 0.858
49 H 0.079 0.921
50 H 0.085 0.915
51 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.035 -20.933 7.032 26.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 N -0.266 5.266
3 C 0.083 3.917
4 C -0.561 4.561
5 H 0.077 0.923
6 C -0.197 4.197
7 N -0.574 5.574
8 Si 0.793 3.207
9 H -0.197 1.197
10 H -0.206 1.206
11 H -0.191 1.191
12 C -0.102 4.102
13 C 0.067 3.933
14 H 0.093 0.907
15 O -0.363 6.363
16 C -0.092 4.092
17 N -0.287 5.287
18 C -0.035 4.035
19 H 0.139 0.861
20 C -0.105 4.105
21 C -0.125 4.125
22 C -0.109 4.109
23 C -0.160 4.160
24 C -0.116 4.116
25 C -0.173 4.173
26 C 0.037 3.963
27 N -0.273 5.273
28 C -0.077 4.077
29 C 0.273 3.727
30 O -0.437 6.437
31 H 0.027 0.973
32 H 0.075 0.925
33 H 0.098 0.902
34 H -0.023 1.023
35 H 0.025 0.975
36 H 0.073 0.927
37 H 0.109 0.891
38 H 0.049 0.951
39 H 0.223 0.777
40 H 0.061 0.939
41 H 0.110 0.890
42 H 0.166 0.834
43 H 0.118 0.882
44 H 0.126 0.874
45 H 0.160 0.840
46 H 0.162 0.838
47 H 0.167 0.833
48 H 0.160 0.840
49 H 0.098 0.902
50 H 0.103 0.897
51 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 15.193 -20.231 6.995 26.250
hybrid contribution -1.271 -0.219 0.189 1.304
sum 13.922 -20.450 7.184 25.761
Atomic orbital electron populations
1.22213 0.87497 1.00997 0.99978 1.61940 1.07860 1.15338 1.41457
1.19393 0.93923 0.83645 0.94704 1.21460 1.34779 0.97463 1.02443
0.92256 1.25902 0.95042 0.98070 1.00682 1.70084 1.39326 1.11809
1.36165 0.85402 0.78005 0.78076 0.79253 1.19704 1.20596 1.19143
1.22750 0.96535 0.98724 0.92170 1.21714 0.93965 0.93582 0.84061
0.90733 1.86645 1.75689 1.34333 1.39668 1.22650 0.87714 0.99436
0.99396 1.60686 1.12982 1.50740 1.04333 1.21951 0.98994 0.85240
0.97319 0.86120 1.20602 0.89773 1.03078 0.97064 1.19682 0.98340
0.94540 0.99905 1.21132 0.93788 0.99994 0.95998 1.21473 1.01146
0.96008 0.97332 1.21306 0.95643 0.95147 0.99493 1.21049 0.97806
1.02257 0.96178 1.17879 0.88862 0.93805 0.95725 1.45459 1.21917
1.10600 1.49297 1.22034 1.03985 0.78147 1.03501 1.22195 0.81575
0.91688 0.77260 1.90696 1.31274 1.72153 1.49613 0.97271 0.92544
0.90164 1.02331 0.97479 0.92709 0.89088 0.95089 0.77693 0.93944
0.89029 0.83412 0.88232 0.87420 0.83974 0.83799 0.83281 0.84050
0.90179 0.89684 0.89497
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.62 9.32 127.69 1.19 2.81 16
2 N -0.54 -24.06 4.60 -927.07 -4.27 -28.32 16
3 C 0.21 11.53 4.57 85.56 0.39 11.93 16
4 C -0.52 -30.75 8.54 25.60 0.22 -30.53 16
5 H 0.06 3.45 7.10 -2.91 -0.02 3.42 16
6 C 0.00 0.05 5.46 84.65 0.46 0.52 16
7 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16
8 Si 0.97 45.48 29.54 68.60 2.03 47.51 16
9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16
10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16
11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16
12 C 0.03 0.97 4.63 86.30 0.40 1.36 16
13 C 0.13 4.31 3.23 30.59 0.10 4.41 16
14 H 0.07 3.16 6.55 -2.39 -0.02 3.15 16
15 O -0.56 -19.16 12.75 -148.98 -1.90 -21.06 16
16 C 0.04 1.02 5.15 86.30 0.44 1.46 16
17 N -0.66 -16.63 6.12 -495.91 -3.04 -19.66 16
18 C 0.08 1.67 2.72 44.07 0.12 1.79 16
19 H 0.12 2.48 7.80 -2.38 -0.02 2.46 16
20 C -0.07 -1.17 5.63 29.81 0.17 -1.00 16
21 C -0.12 -2.24 5.47 -19.77 -0.11 -2.34 16
22 C -0.09 -1.45 9.69 22.24 0.22 -1.23 16
23 C -0.14 -1.97 10.04 22.30 0.22 -1.75 16
24 C -0.10 -1.30 10.04 22.26 0.22 -1.08 16
25 C -0.15 -2.33 9.34 22.39 0.21 -2.12 16
26 C 0.13 2.45 6.31 38.16 0.24 2.69 16
27 N -0.55 -11.04 3.09 -655.24 -2.02 -13.07 16
28 C 0.06 0.99 9.67 127.77 1.24 2.22 16
29 C 0.48 11.70 6.51 87.63 0.57 12.27 16
30 O -0.56 -16.84 16.25 -3.05 -0.05 -16.89 16
31 H 0.01 0.35 8.13 -2.39 -0.02 0.33 16
32 H 0.06 2.38 6.90 -2.38 -0.02 2.37 16
33 H 0.08 2.52 7.97 -2.39 -0.02 2.50 16
34 H -0.04 -2.43 8.11 -2.39 -0.02 -2.45 16
35 H 0.01 0.43 6.38 -2.39 -0.02 0.41 16
36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16
37 H 0.09 2.64 7.88 -2.39 -0.02 2.63 16
38 H 0.03 1.11 8.05 -2.38 -0.02 1.09 16
39 H 0.38 9.89 9.05 -74.06 -0.67 9.22 16
40 H 0.04 1.11 7.88 -2.39 -0.02 1.09 16
41 H 0.09 2.34 8.05 -2.39 -0.02 2.32 16
42 H 0.35 9.49 7.94 -89.69 -0.71 8.78 16
43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
44 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16
45 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16
46 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16
47 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16
48 H 0.14 1.61 6.65 -2.91 -0.02 1.59 16
49 H 0.08 1.47 6.86 -2.38 -0.02 1.45 16
50 H 0.08 1.01 7.30 -2.38 -0.02 0.99 16
51 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
Total: -1.00 -74.91 408.69 -3.10 -78.00
By element:
Atomic # 1 Polarization: 29.57 SS G_CDS: -0.43 Total: 29.14 kcal
Atomic # 6 Polarization: -4.89 SS G_CDS: 6.30 Total: 1.41 kcal
Atomic # 7 Polarization: -109.06 SS G_CDS: -9.04 Total: -118.10 kcal
Atomic # 8 Polarization: -36.00 SS G_CDS: -1.95 Total: -37.95 kcal
Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal
Total: -74.91 -3.10 -78.00 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001650157459.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.827 kcal
(2) G-P(sol) polarization free energy of solvation -74.907 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.080 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds