Wall clock time and date at job start Wed Apr 1 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00261 * 2 1 4 4 C 1.50705 * 109.47135 * 293.95398 * 3 2 1 5 5 H 1.08003 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00060 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00076 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00003 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46964 * 90.00327 * 8 6 4 10 10 H 1.48497 * 109.47287 * 210.00070 * 8 6 4 11 11 H 1.48499 * 109.47283 * 330.00387 * 8 6 4 12 12 C 1.46897 * 110.99829 * 123.95617 * 2 1 3 13 13 C 1.53003 * 109.47421 * 164.01311 * 12 2 1 14 14 H 1.08992 * 109.47158 * 58.50544 * 13 12 2 15 15 O 1.42901 * 109.46690 * 298.50431 * 13 12 2 16 16 C 1.52997 * 109.47041 * 178.50908 * 13 12 2 17 17 N 1.46906 * 109.46564 * 184.99896 * 16 13 12 18 18 C 1.46906 * 110.99732 * 179.97438 * 17 16 13 19 19 H 1.09005 * 109.39328 * 324.81613 * 18 17 16 20 20 C 1.52912 * 109.39677 * 205.00022 * 18 17 16 21 21 C 1.50661 * 109.52350 * 288.43276 * 20 18 17 22 22 C 1.38083 * 120.18058 * 145.78514 * 21 20 18 23 23 C 1.38287 * 120.02645 * 179.71734 * 22 21 20 24 24 C 1.38309 * 120.14468 * 0.52856 * 23 22 21 25 25 C 1.38105 * 120.09032 * 359.74787 * 24 23 22 26 26 C 1.38851 * 119.84403 * 326.05384 * 21 20 18 27 27 N 1.39816 * 119.94029 * 0.03598 * 26 21 20 28 28 C 1.46502 * 119.77450 * 198.45593 * 27 26 21 29 29 C 1.34566 * 120.45997 * 18.48278 * 27 26 21 30 30 O 1.21286 * 119.62298 * 180.80241 * 29 27 26 31 31 H 1.08993 * 109.47322 * 301.53420 * 1 2 3 32 32 H 1.09006 * 109.47108 * 61.53518 * 1 2 3 33 33 H 1.09003 * 109.47575 * 181.52739 * 1 2 3 34 34 H 1.08998 * 109.46986 * 53.94937 * 3 2 1 35 35 H 1.08993 * 109.47740 * 173.95151 * 3 2 1 36 36 H 0.97000 * 120.00069 * 180.02562 * 7 6 4 37 37 H 1.08997 * 109.47668 * 44.01030 * 12 2 1 38 38 H 1.09005 * 109.47297 * 284.01086 * 12 2 1 39 39 H 0.96699 * 114.00256 * 299.99807 * 15 13 12 40 40 H 1.09001 * 109.47637 * 65.00231 * 16 13 12 41 41 H 1.08996 * 109.47432 * 304.99188 * 16 13 12 42 42 H 1.00899 * 111.00075 * 303.94468 * 17 16 13 43 43 H 1.09000 * 109.46038 * 168.41593 * 20 18 17 44 44 H 1.08994 * 109.46018 * 48.45034 * 20 18 17 45 45 H 1.07996 * 119.99108 * 0.02562 * 22 21 20 46 46 H 1.07995 * 119.92671 * 180.24056 * 23 22 21 47 47 H 1.08000 * 119.95367 * 179.72430 * 24 23 22 48 48 H 1.07998 * 120.05490 * 179.97438 * 25 24 23 49 49 H 1.09004 * 109.47435 * 180.02562 * 28 27 26 50 50 H 1.09004 * 109.46924 * 300.02132 * 28 27 26 51 51 H 1.08999 * 109.46815 * 60.01903 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0268 3.3494 -1.5285 7 7 2.7121 4.0018 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.2704 4.8667 -2.9971 10 1 2.6252 5.1882 -3.4790 11 1 1.5007 3.1709 -4.2184 12 6 1.9954 -0.7660 1.1375 13 6 3.4728 -1.0840 0.8985 14 1 4.0281 -0.1550 0.7699 15 8 3.6033 -1.8840 -0.2784 16 6 4.0306 -1.8496 2.0999 17 7 5.4753 -2.0502 1.9248 18 6 6.0467 -2.7833 3.0624 19 1 5.5326 -2.4892 3.9775 20 6 7.5339 -2.4501 3.1859 21 6 8.2908 -3.0992 2.0565 22 6 9.3908 -2.4712 1.5067 23 6 10.0867 -3.0726 0.4740 24 6 9.6771 -4.2986 -0.0181 25 6 8.5743 -4.9289 0.5240 26 6 7.8767 -4.3298 1.5645 27 7 6.7590 -4.9621 2.1175 28 6 6.5549 -6.3970 1.9037 29 6 5.8691 -4.2618 2.8444 30 8 4.9126 -4.8285 3.3294 31 1 -0.3633 0.5374 0.8758 32 1 -0.3634 0.4898 -0.9035 33 1 -0.3634 -1.0273 0.0274 34 1 1.5611 1.9273 0.8309 35 1 3.0797 1.3444 0.1083 36 1 2.9860 4.9182 -0.7767 37 1 1.4356 -1.6957 1.2399 38 1 1.8933 -0.1782 2.0498 39 1 3.1333 -2.7279 -0.2346 40 1 3.5358 -2.8179 2.1754 41 1 3.8510 -1.2778 3.0104 42 1 5.6720 -2.5220 1.0548 43 1 7.9118 -2.8229 4.1379 44 1 7.6690 -1.3695 3.1399 45 1 9.7108 -1.5122 1.8865 46 1 10.9491 -2.5818 0.0478 47 1 10.2202 -4.7634 -0.8276 48 1 8.2548 -5.8860 0.1390 49 1 5.6394 -6.7124 2.4044 50 1 6.4720 -6.5970 0.8354 51 1 7.4013 -6.9492 2.3122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650157459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:31 Heat of formation + Delta-G solvation = -69.175129 kcal Electronic energy + Delta-G solvation = -31114.151255 eV Core-core repulsion = 27012.304816 eV Total energy + Delta-G solvation = -4101.846439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.39022 -39.83131 -39.53785 -37.64308 -36.63431 -36.61639 -34.59818 -33.91880 -31.42218 -30.85667 -29.66912 -29.14701 -28.50083 -26.82005 -25.31182 -24.40036 -23.89193 -22.95449 -22.71706 -21.73921 -19.94913 -19.02620 -18.61754 -18.04095 -17.48994 -17.34868 -17.18491 -16.60289 -16.41683 -16.15715 -15.95137 -15.59798 -15.40253 -15.35671 -15.23609 -14.95387 -14.80427 -14.35464 -14.15356 -13.97279 -13.78680 -13.61532 -13.44045 -13.26334 -13.16501 -13.10493 -12.89961 -12.81399 -12.61417 -12.54183 -12.32196 -12.18945 -12.15039 -11.98041 -11.55321 -11.45564 -11.32065 -11.19956 -10.85024 -10.58881 -9.73689 -9.58746 -8.96832 -8.92137 -8.18629 -6.27925 0.21295 0.44879 1.31886 1.40649 1.42713 1.54404 1.67089 2.41526 2.75357 2.87815 3.13198 3.13977 3.33900 3.60299 3.66832 3.73336 3.92671 3.97170 4.06377 4.11250 4.23575 4.27803 4.33342 4.38665 4.38826 4.46654 4.54148 4.55923 4.58409 4.66351 4.68201 4.72888 4.75824 4.76835 4.96012 5.05830 5.07972 5.12142 5.15982 5.22475 5.31394 5.43593 5.58799 5.65148 5.66146 5.71565 5.92351 6.04198 6.07851 6.20650 6.34252 6.63075 6.73072 6.86965 6.91996 7.41077 8.92587 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.002562 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.053444 B =10924.822811 C =12097.252787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.001 3.999 7 N -0.933 5.933 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.027 3.973 13 C 0.127 3.873 14 H 0.075 0.925 15 O -0.558 6.558 16 C 0.038 3.962 17 N -0.655 5.655 18 C 0.078 3.922 19 H 0.121 0.879 20 C -0.068 4.068 21 C -0.122 4.122 22 C -0.091 4.091 23 C -0.141 4.141 24 C -0.098 4.098 25 C -0.153 4.153 26 C 0.131 3.869 27 N -0.549 5.549 28 C 0.064 3.936 29 C 0.485 3.515 30 O -0.560 6.560 31 H 0.009 0.991 32 H 0.056 0.944 33 H 0.080 0.920 34 H -0.041 1.041 35 H 0.007 0.993 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.031 0.969 39 H 0.376 0.624 40 H 0.042 0.958 41 H 0.091 0.909 42 H 0.347 0.653 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.149 0.851 48 H 0.142 0.858 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.035 -20.933 7.032 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.574 5.574 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.191 1.191 12 C -0.102 4.102 13 C 0.067 3.933 14 H 0.093 0.907 15 O -0.363 6.363 16 C -0.092 4.092 17 N -0.287 5.287 18 C -0.035 4.035 19 H 0.139 0.861 20 C -0.105 4.105 21 C -0.125 4.125 22 C -0.109 4.109 23 C -0.160 4.160 24 C -0.116 4.116 25 C -0.173 4.173 26 C 0.037 3.963 27 N -0.273 5.273 28 C -0.077 4.077 29 C 0.273 3.727 30 O -0.437 6.437 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.098 0.902 34 H -0.023 1.023 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.049 0.951 39 H 0.223 0.777 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.166 0.834 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.167 0.833 48 H 0.160 0.840 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.193 -20.231 6.995 26.250 hybrid contribution -1.271 -0.219 0.189 1.304 sum 13.922 -20.450 7.184 25.761 Atomic orbital electron populations 1.22213 0.87497 1.00997 0.99978 1.61940 1.07860 1.15338 1.41457 1.19393 0.93923 0.83645 0.94704 1.21460 1.34779 0.97463 1.02443 0.92256 1.25902 0.95042 0.98070 1.00682 1.70084 1.39326 1.11809 1.36165 0.85402 0.78005 0.78076 0.79253 1.19704 1.20596 1.19143 1.22750 0.96535 0.98724 0.92170 1.21714 0.93965 0.93582 0.84061 0.90733 1.86645 1.75689 1.34333 1.39668 1.22650 0.87714 0.99436 0.99396 1.60686 1.12982 1.50740 1.04333 1.21951 0.98994 0.85240 0.97319 0.86120 1.20602 0.89773 1.03078 0.97064 1.19682 0.98340 0.94540 0.99905 1.21132 0.93788 0.99994 0.95998 1.21473 1.01146 0.96008 0.97332 1.21306 0.95643 0.95147 0.99493 1.21049 0.97806 1.02257 0.96178 1.17879 0.88862 0.93805 0.95725 1.45459 1.21917 1.10600 1.49297 1.22034 1.03985 0.78147 1.03501 1.22195 0.81575 0.91688 0.77260 1.90696 1.31274 1.72153 1.49613 0.97271 0.92544 0.90164 1.02331 0.97479 0.92709 0.89088 0.95089 0.77693 0.93944 0.89029 0.83412 0.88232 0.87420 0.83974 0.83799 0.83281 0.84050 0.90179 0.89684 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.32 127.69 1.19 2.81 16 2 N -0.54 -24.06 4.60 -927.07 -4.27 -28.32 16 3 C 0.21 11.53 4.57 85.56 0.39 11.93 16 4 C -0.52 -30.75 8.54 25.60 0.22 -30.53 16 5 H 0.06 3.45 7.10 -2.91 -0.02 3.42 16 6 C 0.00 0.05 5.46 84.65 0.46 0.52 16 7 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 8 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 C 0.03 0.97 4.63 86.30 0.40 1.36 16 13 C 0.13 4.31 3.23 30.59 0.10 4.41 16 14 H 0.07 3.16 6.55 -2.39 -0.02 3.15 16 15 O -0.56 -19.16 12.75 -148.98 -1.90 -21.06 16 16 C 0.04 1.02 5.15 86.30 0.44 1.46 16 17 N -0.66 -16.63 6.12 -495.91 -3.04 -19.66 16 18 C 0.08 1.67 2.72 44.07 0.12 1.79 16 19 H 0.12 2.48 7.80 -2.38 -0.02 2.46 16 20 C -0.07 -1.17 5.63 29.81 0.17 -1.00 16 21 C -0.12 -2.24 5.47 -19.77 -0.11 -2.34 16 22 C -0.09 -1.45 9.69 22.24 0.22 -1.23 16 23 C -0.14 -1.97 10.04 22.30 0.22 -1.75 16 24 C -0.10 -1.30 10.04 22.26 0.22 -1.08 16 25 C -0.15 -2.33 9.34 22.39 0.21 -2.12 16 26 C 0.13 2.45 6.31 38.16 0.24 2.69 16 27 N -0.55 -11.04 3.09 -655.24 -2.02 -13.07 16 28 C 0.06 0.99 9.67 127.77 1.24 2.22 16 29 C 0.48 11.70 6.51 87.63 0.57 12.27 16 30 O -0.56 -16.84 16.25 -3.05 -0.05 -16.89 16 31 H 0.01 0.35 8.13 -2.39 -0.02 0.33 16 32 H 0.06 2.38 6.90 -2.38 -0.02 2.37 16 33 H 0.08 2.52 7.97 -2.39 -0.02 2.50 16 34 H -0.04 -2.43 8.11 -2.39 -0.02 -2.45 16 35 H 0.01 0.43 6.38 -2.39 -0.02 0.41 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.09 2.64 7.88 -2.39 -0.02 2.63 16 38 H 0.03 1.11 8.05 -2.38 -0.02 1.09 16 39 H 0.38 9.89 9.05 -74.06 -0.67 9.22 16 40 H 0.04 1.11 7.88 -2.39 -0.02 1.09 16 41 H 0.09 2.34 8.05 -2.39 -0.02 2.32 16 42 H 0.35 9.49 7.94 -89.69 -0.71 8.78 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16 45 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 46 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 48 H 0.14 1.61 6.65 -2.91 -0.02 1.59 16 49 H 0.08 1.47 6.86 -2.38 -0.02 1.45 16 50 H 0.08 1.01 7.30 -2.38 -0.02 0.99 16 51 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -74.91 408.69 -3.10 -78.00 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.43 Total: 29.14 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 6.30 Total: 1.41 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -9.04 Total: -118.10 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.95 Total: -37.95 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.91 -3.10 -78.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650157459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.827 kcal (2) G-P(sol) polarization free energy of solvation -74.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds