Wall clock time and date at job start Wed Apr 1 2020 04:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35676 * 116.99635 * 179.97438 * 3 2 1 5 5 C 1.38919 * 119.68419 * 179.97438 * 4 3 2 6 6 C 1.38382 * 119.11371 * 179.97438 * 5 4 3 7 7 C 1.38827 * 118.48290 * 0.02562 * 6 5 4 8 8 C 1.38043 * 119.29075 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.58228 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47087 * 125.00264 * 9 8 7 11 11 O 1.21276 * 119.99892 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00088 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00157 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47008 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46896 * 180.02562 * 14 13 12 16 16 H 1.09007 * 110.64073 * 54.29789 * 15 14 13 17 17 C 1.55156 * 110.71961 * 177.44259 * 15 14 13 18 18 C 1.55130 * 101.48361 * 153.73359 * 17 15 14 19 19 N 1.47417 * 104.94359 * 323.22146 * 18 17 15 20 20 C 1.36936 * 125.64782 * 203.96604 * 19 18 17 21 21 H 1.07997 * 120.00104 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99884 * 0.04452 * 20 19 18 23 23 N 1.31614 * 120.00074 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99649 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47331 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47041 * 120.00393 * 24 22 20 27 27 H 1.48499 * 109.46884 * 239.99956 * 24 22 20 28 28 C 1.47028 * 108.70586 * 24.00496 * 19 18 17 29 29 N 1.31964 * 120.83659 * 359.74482 * 8 7 6 30 30 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 35 35 H 1.08003 * 120.44670 * 0.02562 * 5 4 3 36 36 H 1.08003 * 120.75754 * 179.97438 * 6 5 4 37 37 H 1.08006 * 120.35268 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47445 * 245.00121 * 9 8 7 39 39 H 1.08997 * 109.47195 * 5.00443 * 9 8 7 40 40 H 0.97008 * 119.99794 * 359.97438 * 12 10 9 41 41 H 1.08994 * 109.46967 * 299.99622 * 13 12 10 42 42 H 1.09007 * 109.46958 * 59.99903 * 13 12 10 43 43 H 1.08994 * 109.47298 * 299.99848 * 14 13 12 44 44 H 1.08997 * 109.47172 * 60.00400 * 14 13 12 45 45 H 1.09004 * 111.00251 * 271.93765 * 17 15 14 46 46 H 1.08997 * 111.00409 * 35.79573 * 17 15 14 47 47 H 1.08994 * 110.41539 * 204.28988 * 18 17 15 48 48 H 1.09001 * 110.29815 * 82.09606 * 18 17 15 49 49 H 0.97002 * 119.99841 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.88035 * 239.52325 * 28 19 18 51 51 H 1.09003 * 110.01252 * 118.42568 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8752 2.8117 0.0000 6 6 5.2488 2.9794 0.0011 7 6 6.0538 1.8484 0.0022 8 6 5.4646 0.6000 0.0026 9 6 6.3322 -0.6322 0.0031 10 6 5.9550 -1.5117 1.1673 11 8 5.0685 -1.1716 1.9219 12 7 6.6026 -2.6761 1.3698 13 6 6.2363 -3.5309 2.5019 14 6 7.1171 -4.7819 2.5023 15 6 6.7340 -5.6749 3.6842 16 1 5.6668 -5.8964 3.6683 17 6 7.5667 -6.9840 3.6756 18 6 7.5619 -7.3629 5.1799 19 7 7.6484 -6.0773 5.8961 20 6 8.1272 -5.9023 7.1670 21 1 8.1486 -4.9153 7.6049 22 6 8.5854 -6.9936 7.8924 23 7 8.5592 -8.1964 7.3588 24 14 9.2392 -6.7547 9.6259 25 1 9.1611 -5.3175 9.9908 26 1 8.4230 -7.5514 10.5769 27 1 10.6526 -7.2058 9.6883 28 6 7.1346 -5.0141 5.0201 29 7 4.1512 0.4719 0.0071 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.2192 3.6698 -0.0004 36 1 5.6847 3.9676 0.0004 37 1 7.1296 1.9442 0.0026 38 1 6.1864 -1.1797 -0.9280 39 1 7.3784 -0.3399 0.0927 40 1 7.3114 -2.9483 0.7660 41 1 6.3821 -2.9831 3.4328 42 1 5.1900 -3.8235 2.4125 43 1 6.9709 -5.3296 1.5713 44 1 8.1633 -4.4896 2.5915 45 1 7.0804 -7.7525 3.0747 46 1 8.5817 -6.7991 3.3238 47 1 8.4226 -7.9881 5.4173 48 1 6.6368 -7.8790 5.4369 49 1 8.8790 -8.9590 7.8659 50 1 7.9110 -4.2690 4.8469 51 1 6.2640 -4.5430 5.4764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664731998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:28 Heat of formation + Delta-G solvation = -23.784692 kcal Electronic energy + Delta-G solvation = -29533.796619 eV Core-core repulsion = 25433.918457 eV Total energy + Delta-G solvation = -4099.878162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.99769 -39.63310 -38.26430 -37.73817 -35.17759 -33.41529 -33.00559 -32.46309 -31.44749 -30.70219 -29.09430 -28.27140 -26.38297 -24.73591 -24.18504 -23.07426 -22.51133 -22.02901 -20.64370 -20.07287 -19.27581 -18.52470 -17.33847 -16.89151 -16.75930 -16.39737 -16.27474 -15.85671 -15.71529 -15.10355 -14.61051 -14.36925 -14.33927 -14.22381 -13.75302 -13.64871 -13.46571 -13.30685 -12.81861 -12.67534 -12.50406 -12.35532 -12.26599 -12.17513 -11.83291 -11.72960 -11.66264 -11.56661 -11.04723 -10.93850 -10.88807 -10.75418 -10.14581 -10.12283 -10.09082 -9.94495 -9.86808 -9.76021 -9.69285 -9.43250 -9.05861 -8.67934 -8.62183 -6.78851 -5.62361 -3.03497 0.83947 1.06165 2.61336 2.80937 3.05410 3.41309 3.46936 3.49492 3.57940 3.79659 4.37114 4.51849 4.68189 4.70647 4.79022 4.81483 4.82942 4.93773 4.99800 5.03746 5.06022 5.13435 5.18160 5.31644 5.39602 5.48100 5.50825 5.61108 5.62472 5.64228 5.66558 5.79702 5.81916 5.89436 5.92175 6.04336 6.15846 6.21816 6.25350 6.40952 6.44600 6.63075 6.66812 6.80245 7.01087 7.04960 7.43738 7.56051 7.67187 7.67731 7.89146 8.20059 8.40105 9.25997 9.87039 10.52509 11.41658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.001739 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.607860 B =16095.320938 C =16322.860520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.309 6.309 4 C 0.328 3.672 5 C -0.195 4.195 6 C -0.041 4.041 7 C -0.207 4.207 8 C 0.184 3.816 9 C -0.094 4.094 10 C 0.515 3.485 11 O -0.522 6.522 12 N -0.732 5.732 13 C 0.119 3.881 14 C -0.115 4.115 15 C -0.097 4.097 16 H 0.071 0.929 17 C -0.139 4.139 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.140 3.860 29 N -0.512 5.512 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.399 0.601 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.010 0.990 49 H 0.251 0.749 50 H 0.022 0.978 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 18.447 -22.804 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.148 3.852 5 C -0.216 4.216 6 C -0.067 4.067 7 C -0.227 4.227 8 C 0.047 3.953 9 C -0.135 4.135 10 C 0.300 3.700 11 O -0.396 6.396 12 N -0.384 5.384 13 C -0.004 4.004 14 C -0.154 4.154 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.209 4.209 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.014 3.986 29 N -0.235 5.235 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.028 0.972 49 H 0.061 0.939 50 H 0.040 0.960 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.269 17.936 -22.038 29.594 hybrid contribution 1.005 0.521 0.665 1.314 sum -7.264 18.458 -21.373 29.159 Atomic orbital electron populations 1.21819 0.93096 1.02957 1.03095 1.22614 0.94555 0.80823 1.02881 1.86207 1.16829 1.30973 1.87660 1.19738 0.84082 0.89709 0.91661 1.21064 0.95955 0.95770 1.08821 1.21341 0.92295 0.99325 0.93710 1.21749 1.01350 0.92498 1.07091 1.20148 0.88707 0.93433 0.93024 1.20659 0.99790 0.93587 0.99442 1.20187 0.82185 0.81511 0.86134 1.90753 1.29927 1.72350 1.46607 1.46051 1.39489 1.21484 1.31381 1.21473 0.99243 0.90849 0.88817 1.21783 0.99693 0.94747 0.99140 1.22094 0.99778 0.95890 0.93943 0.91028 1.23074 0.98547 0.95401 1.00720 1.21954 1.01694 0.88874 0.84862 1.44528 1.73074 1.02493 1.13048 1.19143 1.33091 0.93927 0.88615 0.90500 1.24792 1.01982 0.95335 0.98814 1.69816 1.53127 0.98156 1.36126 0.85999 0.78260 0.77278 0.84007 1.20542 1.21784 1.21774 1.21361 0.95811 0.91951 0.89487 1.67036 1.05772 1.33145 1.17558 0.91649 0.91851 0.90253 0.91030 0.91848 0.84262 0.84072 0.84494 0.86953 0.86993 0.76765 0.91098 0.91643 0.91674 0.91201 0.92481 0.92217 0.87702 0.97186 0.93855 0.96006 0.96314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.07 0.70 6.03 37.16 0.22 0.92 16 3 O -0.31 -3.68 10.12 -18.73 -0.19 -3.87 16 4 C 0.33 3.97 7.49 -17.12 -0.13 3.84 16 5 C -0.20 -1.85 10.04 -39.28 -0.39 -2.25 16 6 C -0.04 -0.32 10.17 -39.31 -0.40 -0.72 16 7 C -0.21 -1.70 9.70 -39.44 -0.38 -2.08 16 8 C 0.18 1.93 5.77 -82.61 -0.48 1.45 16 9 C -0.09 -0.75 6.10 -29.03 -0.18 -0.92 16 10 C 0.52 6.15 7.76 -10.98 -0.09 6.06 16 11 O -0.52 -8.77 15.32 5.56 0.09 -8.68 16 12 N -0.73 -7.50 5.56 -60.29 -0.33 -7.83 16 13 C 0.12 1.53 5.54 -4.04 -0.02 1.51 16 14 C -0.12 -1.46 4.72 -26.73 -0.13 -1.59 16 15 C -0.10 -1.65 2.95 -88.78 -0.26 -1.91 16 16 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 17 C -0.14 -2.57 6.55 -24.46 -0.16 -2.73 16 18 C 0.15 3.71 5.89 -2.41 -0.01 3.70 16 19 N -0.61 -15.87 3.40 -169.93 -0.58 -16.45 16 20 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 23 N -0.92 -27.30 10.09 55.49 0.56 -26.74 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.14 2.96 6.11 -3.06 -0.02 2.95 16 29 N -0.51 -6.53 8.06 -9.55 -0.08 -6.60 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 36 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.14 0.73 7.94 -52.48 -0.42 0.31 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.53 7.86 -51.93 -0.41 0.12 16 40 H 0.40 2.75 8.47 -40.82 -0.35 2.40 16 41 H 0.07 1.07 7.59 -51.93 -0.39 0.67 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 47 H 0.11 2.89 5.87 -51.93 -0.31 2.58 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 415.68 15.07 6.26 6.26 Total: -1.00 -36.04 415.68 -10.15 -46.19 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.57 Total: -0.22 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.29 Total: 0.53 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.43 Total: -57.63 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.10 Total: -12.56 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.04 -10.15 -46.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664731998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.402 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds