Wall clock time and date at job start Wed Apr 1 2020 04:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35676 * 116.99635 * 179.97438 * 3 2 1 5 5 C 1.38919 * 119.68419 * 179.97438 * 4 3 2 6 6 C 1.38382 * 119.11371 * 179.97438 * 5 4 3 7 7 C 1.38827 * 118.48290 * 0.02562 * 6 5 4 8 8 C 1.38043 * 119.29075 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.58228 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47087 * 125.00264 * 9 8 7 11 11 O 1.21276 * 119.99892 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00088 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00157 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47008 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46896 * 180.02562 * 14 13 12 16 16 H 1.09007 * 110.64073 * 54.29789 * 15 14 13 17 17 C 1.55156 * 110.71961 * 177.44259 * 15 14 13 18 18 C 1.55130 * 101.48361 * 153.73359 * 17 15 14 19 19 N 1.47417 * 104.94359 * 323.22146 * 18 17 15 20 20 C 1.36936 * 125.64782 * 203.96604 * 19 18 17 21 21 H 1.07997 * 120.00104 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99884 * 0.04452 * 20 19 18 23 23 N 1.31614 * 120.00074 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99649 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47331 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47041 * 120.00393 * 24 22 20 27 27 H 1.48499 * 109.46884 * 239.99956 * 24 22 20 28 28 C 1.47028 * 108.70586 * 24.00496 * 19 18 17 29 29 N 1.31964 * 120.83659 * 359.74482 * 8 7 6 30 30 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 35 35 H 1.08003 * 120.44670 * 0.02562 * 5 4 3 36 36 H 1.08003 * 120.75754 * 179.97438 * 6 5 4 37 37 H 1.08006 * 120.35268 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47445 * 245.00121 * 9 8 7 39 39 H 1.08997 * 109.47195 * 5.00443 * 9 8 7 40 40 H 0.97008 * 119.99794 * 359.97438 * 12 10 9 41 41 H 1.08994 * 109.46967 * 299.99622 * 13 12 10 42 42 H 1.09007 * 109.46958 * 59.99903 * 13 12 10 43 43 H 1.08994 * 109.47298 * 299.99848 * 14 13 12 44 44 H 1.08997 * 109.47172 * 60.00400 * 14 13 12 45 45 H 1.09004 * 111.00251 * 271.93765 * 17 15 14 46 46 H 1.08997 * 111.00409 * 35.79573 * 17 15 14 47 47 H 1.08994 * 110.41539 * 204.28988 * 18 17 15 48 48 H 1.09001 * 110.29815 * 82.09606 * 18 17 15 49 49 H 0.97002 * 119.99841 * 180.02562 * 23 22 20 50 50 H 1.08996 * 109.88035 * 239.52325 * 28 19 18 51 51 H 1.09003 * 110.01252 * 118.42568 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8752 2.8117 0.0000 6 6 5.2488 2.9794 0.0011 7 6 6.0538 1.8484 0.0022 8 6 5.4646 0.6000 0.0026 9 6 6.3322 -0.6322 0.0031 10 6 5.9550 -1.5117 1.1673 11 8 5.0685 -1.1716 1.9219 12 7 6.6026 -2.6761 1.3698 13 6 6.2363 -3.5309 2.5019 14 6 7.1171 -4.7819 2.5023 15 6 6.7340 -5.6749 3.6842 16 1 5.6668 -5.8964 3.6683 17 6 7.5667 -6.9840 3.6756 18 6 7.5619 -7.3629 5.1799 19 7 7.6484 -6.0773 5.8961 20 6 8.1272 -5.9023 7.1670 21 1 8.1486 -4.9153 7.6049 22 6 8.5854 -6.9936 7.8924 23 7 8.5592 -8.1964 7.3588 24 14 9.2392 -6.7547 9.6259 25 1 9.1611 -5.3175 9.9908 26 1 8.4230 -7.5514 10.5769 27 1 10.6526 -7.2058 9.6883 28 6 7.1346 -5.0141 5.0201 29 7 4.1512 0.4719 0.0071 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.2192 3.6698 -0.0004 36 1 5.6847 3.9676 0.0004 37 1 7.1296 1.9442 0.0026 38 1 6.1864 -1.1797 -0.9280 39 1 7.3784 -0.3399 0.0927 40 1 7.3114 -2.9483 0.7660 41 1 6.3821 -2.9831 3.4328 42 1 5.1900 -3.8235 2.4125 43 1 6.9709 -5.3296 1.5713 44 1 8.1633 -4.4896 2.5915 45 1 7.0804 -7.7525 3.0747 46 1 8.5817 -6.7991 3.3238 47 1 8.4226 -7.9881 5.4173 48 1 6.6368 -7.8790 5.4369 49 1 8.8790 -8.9590 7.8659 50 1 7.9110 -4.2690 4.8469 51 1 6.2640 -4.5430 5.4764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664731998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:27 Heat of formation + Delta-G solvation = -49.141244 kcal Electronic energy + Delta-G solvation = -29534.896161 eV Core-core repulsion = 25433.918457 eV Total energy + Delta-G solvation = -4100.977704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72676 -40.57073 -39.43059 -38.94651 -36.41605 -34.74756 -34.09029 -33.16380 -32.60571 -31.91707 -30.71935 -29.20635 -27.87613 -26.47747 -24.95640 -23.99326 -23.47987 -22.95863 -21.95597 -21.55398 -20.65908 -19.29876 -18.90007 -18.17143 -17.56385 -17.24611 -17.07838 -16.88100 -16.74130 -16.64624 -16.20049 -15.59343 -15.24121 -15.08073 -14.98398 -14.74770 -14.36847 -14.27513 -13.95090 -13.79533 -13.54552 -13.43533 -13.39019 -13.32914 -13.11186 -12.91650 -12.82960 -12.78038 -12.69593 -12.46874 -12.20808 -11.98543 -11.78756 -11.72033 -11.55039 -11.43283 -11.25688 -10.90075 -10.77916 -10.74810 -10.48356 -10.03467 -9.39704 -8.88880 -7.78896 -5.23252 0.15058 0.40150 1.44357 1.45605 1.56134 1.73745 2.08573 2.21914 2.48133 2.86147 3.12995 3.29981 3.73398 3.76697 3.79912 3.94748 3.96842 4.02151 4.06201 4.16256 4.18008 4.21025 4.33494 4.35449 4.39046 4.41749 4.51990 4.56375 4.64204 4.71490 4.74105 4.80744 4.83174 4.89370 4.89795 5.03440 5.04548 5.12689 5.16536 5.19955 5.26291 5.27177 5.43126 5.50757 5.51620 5.56790 5.68750 5.83028 6.27736 6.31590 6.65459 6.96340 7.10700 7.37366 7.78470 8.42314 9.22947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.001739 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.607860 B =16095.320938 C =16322.860520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 O -0.322 6.322 4 C 0.291 3.709 5 C -0.203 4.203 6 C -0.039 4.039 7 C -0.201 4.201 8 C 0.155 3.845 9 C -0.085 4.085 10 C 0.510 3.490 11 O -0.579 6.579 12 N -0.716 5.716 13 C 0.126 3.874 14 C -0.098 4.098 15 C -0.085 4.085 16 H 0.074 0.926 17 C -0.121 4.121 18 C 0.148 3.852 19 N -0.629 5.629 20 C -0.240 4.240 21 H 0.076 0.924 22 C -0.069 4.069 23 N -0.948 5.948 24 Si 0.981 3.019 25 H -0.269 1.269 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.134 3.866 29 N -0.542 5.542 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.154 0.846 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.419 0.581 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.072 0.928 48 H -0.019 1.019 49 H 0.247 0.753 50 H 0.027 0.973 51 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 19.959 -25.012 32.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.006 4.006 3 O -0.231 6.231 4 C 0.112 3.888 5 C -0.224 4.224 6 C -0.064 4.064 7 C -0.221 4.221 8 C 0.018 3.982 9 C -0.125 4.125 10 C 0.297 3.703 11 O -0.458 6.458 12 N -0.370 5.370 13 C 0.002 3.998 14 C -0.136 4.136 15 C -0.105 4.105 16 H 0.093 0.907 17 C -0.159 4.159 18 C 0.023 3.977 19 N -0.355 5.355 20 C -0.369 4.369 21 H 0.094 0.906 22 C -0.262 4.262 23 N -0.598 5.598 24 Si 0.809 3.191 25 H -0.194 1.194 26 H -0.219 1.219 27 H -0.214 1.214 28 C 0.009 3.991 29 N -0.266 5.266 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.171 0.829 36 H 0.196 0.804 37 H 0.190 0.810 38 H 0.154 0.846 39 H 0.170 0.830 40 H 0.257 0.743 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.090 0.910 48 H -0.001 1.001 49 H 0.057 0.943 50 H 0.045 0.955 51 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -6.641 19.455 -24.298 31.828 hybrid contribution 0.524 0.083 1.375 1.474 sum -6.117 19.538 -22.923 30.735 Atomic orbital electron populations 1.21814 0.90913 1.04051 1.03460 1.22591 0.96210 0.80471 1.01293 1.86182 1.17453 1.31325 1.88115 1.20178 0.84109 0.90857 0.93622 1.21400 0.97333 0.95197 1.08455 1.21839 0.91445 1.01050 0.92093 1.22202 1.03191 0.91653 1.05013 1.20729 0.88350 0.95421 0.93692 1.20772 1.01311 0.92145 0.98237 1.20960 0.81135 0.81777 0.86467 1.90741 1.32490 1.73655 1.48909 1.45858 1.39665 1.20724 1.30731 1.21190 0.98764 0.91068 0.88762 1.21618 0.99734 0.93844 0.98375 1.22016 0.99698 0.95485 0.93256 0.90740 1.22912 0.99922 0.96788 0.96289 1.21807 0.98709 0.88077 0.89065 1.44876 1.73191 1.04286 1.13168 1.19483 1.33214 0.94055 0.90155 0.90617 1.25654 1.02607 0.95155 1.02749 1.70069 1.53806 0.98661 1.37296 0.84971 0.77375 0.77593 0.79161 1.19368 1.21926 1.21358 1.21559 0.95197 0.91313 0.91005 1.66990 1.07188 1.33996 1.18414 0.91867 0.90792 0.88784 0.93903 0.92097 0.82871 0.80425 0.80993 0.84625 0.82963 0.74332 0.93858 0.92869 0.88305 0.90404 0.89547 0.91132 0.90976 1.00101 0.94292 0.95487 0.97521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.07 1.57 6.03 71.98 0.43 2.00 16 3 O -0.32 -8.15 10.12 -89.94 -0.91 -9.06 16 4 C 0.29 7.27 7.49 84.79 0.63 7.91 16 5 C -0.20 -3.72 10.04 22.47 0.23 -3.50 16 6 C -0.04 -0.51 10.17 22.44 0.23 -0.28 16 7 C -0.20 -2.72 9.70 22.36 0.22 -2.50 16 8 C 0.16 3.02 5.77 42.49 0.25 3.26 16 9 C -0.08 -1.11 6.10 29.10 0.18 -0.93 16 10 C 0.51 11.49 7.76 87.66 0.68 12.17 16 11 O -0.58 -19.91 15.32 -3.02 -0.05 -19.96 16 12 N -0.72 -13.00 5.56 -463.06 -2.57 -15.57 16 13 C 0.13 3.08 5.54 86.38 0.48 3.56 16 14 C -0.10 -2.17 4.72 30.60 0.14 -2.03 16 15 C -0.08 -2.74 2.95 -9.60 -0.03 -2.77 16 16 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 17 C -0.12 -4.26 6.55 32.06 0.21 -4.05 16 18 C 0.15 7.45 5.89 86.93 0.51 7.96 16 19 N -0.63 -33.69 3.40 -691.55 -2.35 -36.04 16 20 C -0.24 -14.01 10.27 84.03 0.86 -13.15 16 21 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 22 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 23 N -0.95 -57.67 10.09 21.65 0.22 -57.46 16 24 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 C 0.13 5.72 6.11 86.73 0.53 6.25 16 29 N -0.54 -14.05 8.06 -296.99 -2.39 -16.45 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 35 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.17 1.01 7.94 -2.91 -0.02 0.98 16 38 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.15 0.71 7.86 -2.39 -0.02 0.69 16 40 H 0.42 4.13 8.47 -92.70 -0.79 3.34 16 41 H 0.04 1.30 7.59 -2.39 -0.02 1.29 16 42 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.68 8.01 -2.39 -0.02 1.66 16 45 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 46 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 47 H 0.07 4.10 5.87 -2.39 -0.01 4.09 16 48 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 49 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 50 H 0.03 1.12 7.73 -2.39 -0.02 1.11 16 51 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -84.84 415.68 0.86 -83.97 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.13 Total: 12.88 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.76 Total: 8.82 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -7.10 Total: -125.52 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.96 Total: -29.02 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -84.84 0.86 -83.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664731998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.833 kcal (2) G-P(sol) polarization free energy of solvation -84.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds