Wall clock time and date at job start Wed Apr 1 2020 04:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.47050 * 2 1 4 4 C 1.35707 * 116.99643 * 180.02562 * 3 2 1 5 5 C 1.38998 * 119.91737 * 359.72853 * 4 3 2 6 6 C 1.37701 * 120.09197 * 179.72654 * 5 4 3 7 7 C 1.39738 * 119.90576 * 0.56578 * 6 5 4 8 8 C 1.47598 * 120.08259 * 179.72549 * 7 6 5 9 9 O 1.21588 * 120.00110 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00534 * 359.97438 * 8 7 6 11 11 C 1.46493 * 120.00380 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47085 * 180.02562 * 11 10 8 13 13 N 1.46903 * 109.46853 * 180.02562 * 12 11 10 14 14 C 1.46902 * 110.99942 * 294.29578 * 13 12 11 15 15 C 1.53237 * 109.33786 * 172.74766 * 14 13 12 16 16 N 1.47081 * 108.52313 * 53.83478 * 15 14 13 17 17 C 1.36939 * 120.88270 * 128.83548 * 16 15 14 18 18 H 1.08002 * 119.99822 * 206.56754 * 17 16 15 19 19 C 1.38805 * 119.99875 * 26.55601 * 17 16 15 20 20 N 1.31622 * 120.00441 * 17.03235 * 19 17 16 21 21 Si 1.86809 * 120.00053 * 197.02945 * 19 17 16 22 22 H 1.48498 * 109.47002 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46965 * 120.00228 * 21 19 17 24 24 H 1.48498 * 109.46972 * 240.00720 * 21 19 17 25 25 C 1.47080 * 118.23662 * 308.81416 * 16 15 14 26 26 C 1.46905 * 110.99875 * 170.00084 * 13 12 11 27 27 C 1.39734 * 119.82839 * 359.71287 * 7 6 5 28 28 C 1.37699 * 119.90891 * 359.97438 * 27 7 6 29 29 H 1.09003 * 109.46769 * 299.99916 * 1 2 3 30 30 H 1.09003 * 109.46974 * 59.99494 * 1 2 3 31 31 H 1.08995 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47085 * 240.00493 * 2 1 3 33 33 H 1.08994 * 109.47078 * 120.00716 * 2 1 3 34 34 H 1.08003 * 119.94834 * 0.02562 * 5 4 3 35 35 H 1.07993 * 120.04537 * 180.25381 * 6 5 4 36 36 H 0.97008 * 119.99287 * 0.02562 * 10 8 7 37 37 H 1.09006 * 109.47204 * 299.99511 * 11 10 8 38 38 H 1.08997 * 109.47661 * 60.00025 * 11 10 8 39 39 H 1.08996 * 109.47120 * 299.99812 * 12 11 10 40 40 H 1.08998 * 109.47383 * 59.99787 * 12 11 10 41 41 H 1.08997 * 109.49614 * 292.71210 * 14 13 12 42 42 H 1.09001 * 109.48697 * 52.79205 * 14 13 12 43 43 H 1.08998 * 109.63127 * 294.12579 * 15 14 13 44 44 H 1.09004 * 109.62539 * 173.54435 * 15 14 13 45 45 H 0.97001 * 120.00179 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.62770 * 291.47715 * 25 16 15 47 47 H 1.09000 * 109.78617 * 170.98396 * 25 16 15 48 48 H 1.09004 * 109.49252 * 307.21166 * 26 13 12 49 49 H 1.09002 * 109.48990 * 67.28965 * 26 13 12 50 50 H 1.07998 * 120.04479 * 180.02562 * 27 7 6 51 51 H 1.07996 * 119.95474 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5251 -0.0005 5 6 4.1969 0.4215 0.0046 6 6 5.5625 0.5976 -0.0016 7 6 6.0986 1.8881 -0.0011 8 6 7.5618 2.0815 -0.0017 9 8 8.0266 3.2050 -0.0018 10 7 8.3829 1.0126 -0.0020 11 6 9.8352 1.2046 -0.0031 12 6 10.5298 -0.1587 -0.0040 13 7 11.9861 0.0338 -0.0045 14 6 12.4336 0.6627 -1.2544 15 6 13.9218 1.0105 -1.1430 16 7 14.6580 -0.2037 -0.7596 17 6 15.7561 -0.6130 -1.4680 18 1 16.0296 -1.6577 -1.4842 19 6 16.5174 0.3147 -2.1654 20 7 16.4056 1.5972 -1.8914 21 14 17.7010 -0.2570 -3.4929 22 1 17.6395 -1.7363 -3.6072 23 1 17.3217 0.3556 -4.7913 24 1 19.0821 0.1553 -3.1356 25 6 14.1837 -0.9664 0.4052 26 6 12.6851 -1.2363 0.2328 27 6 5.2457 2.9950 -0.0005 28 6 3.8811 2.8103 -0.0008 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.7817 -0.5755 0.0087 35 1 6.2184 -0.2603 -0.0017 36 1 8.0120 0.1163 -0.0023 37 1 10.1275 1.7613 -0.8935 38 1 10.1288 1.7617 0.8865 39 1 10.2376 -0.7159 0.8861 40 1 10.2362 -0.7156 -0.8938 41 1 12.2826 -0.0282 -2.0837 42 1 11.8595 1.5727 -1.4294 43 1 14.0624 1.7791 -0.3830 44 1 14.2864 1.3715 -2.1047 45 1 16.9380 2.2455 -2.3785 46 1 14.3493 -0.3878 1.3139 47 1 14.7210 -1.9125 0.4704 48 1 12.2935 -1.7037 1.1363 49 1 12.5306 -1.9008 -0.6173 50 1 5.6562 3.9939 -0.0006 51 1 3.2213 3.6653 -0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690080596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:18 Heat of formation + Delta-G solvation = -14.004887 kcal Electronic energy + Delta-G solvation = -29337.582250 eV Core-core repulsion = 25238.128172 eV Total energy + Delta-G solvation = -4099.454077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.82533 -39.73891 -38.26725 -37.47230 -35.44686 -34.02014 -32.61544 -31.58326 -31.32767 -30.39583 -29.93812 -28.60354 -25.97711 -24.62321 -23.84001 -23.22149 -22.59278 -22.13638 -21.30469 -20.62175 -19.11337 -18.92556 -17.81834 -16.87141 -16.67676 -16.60755 -15.77890 -15.58519 -15.34003 -14.87868 -14.57437 -14.47608 -14.32141 -14.08481 -13.93957 -13.80587 -13.58455 -13.48480 -13.41647 -13.21004 -12.94007 -12.72645 -12.59169 -12.31606 -12.22810 -11.64576 -11.43210 -11.34542 -11.25970 -11.22304 -11.05534 -10.75207 -10.43847 -10.31201 -10.07924 -10.04850 -9.74725 -9.60702 -9.52300 -9.14165 -8.65315 -8.50200 -7.89071 -6.65871 -5.76753 -3.18140 0.55333 0.89411 2.61750 2.64657 2.97711 3.37948 3.45668 3.47721 3.54399 4.18583 4.33836 4.34177 4.37394 4.46376 4.51205 4.56989 4.65410 4.76855 4.90382 4.96645 5.03720 5.16636 5.20909 5.26074 5.40763 5.42846 5.45267 5.50787 5.51008 5.68907 5.79707 5.82482 5.90500 5.93197 6.00268 6.07932 6.11126 6.19825 6.22638 6.31890 6.36282 6.54222 6.69170 6.85992 6.92817 7.24491 7.35035 7.54531 7.64487 7.70434 7.82427 8.10317 8.44584 9.22384 9.85841 10.44249 11.32059 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025069 B = 0.001554 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.658305 B =18008.617169 C =18366.757542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.313 6.313 4 C 0.154 3.846 5 C -0.218 4.218 6 C -0.044 4.044 7 C -0.171 4.171 8 C 0.560 3.440 9 O -0.535 6.535 10 N -0.725 5.725 11 C 0.121 3.879 12 C 0.045 3.955 13 N -0.529 5.529 14 C 0.031 3.969 15 C 0.178 3.822 16 N -0.595 5.595 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.148 3.852 26 C 0.046 3.954 27 C -0.018 4.018 28 C -0.161 4.161 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.396 0.604 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.026 0.974 42 H 0.064 0.936 43 H 0.028 0.972 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.028 0.972 50 H 0.145 0.855 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.747 -4.959 4.742 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.226 6.226 4 C 0.108 3.892 5 C -0.237 4.237 6 C -0.063 4.063 7 C -0.175 4.175 8 C 0.347 3.653 9 O -0.413 6.413 10 N -0.377 5.377 11 C -0.002 4.002 12 C -0.084 4.084 13 N -0.254 5.254 14 C -0.098 4.098 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.021 3.979 26 C -0.083 4.083 27 C -0.037 4.037 28 C -0.179 4.179 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.231 0.769 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.163 0.837 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -31.299 -3.582 5.045 31.905 hybrid contribution 0.290 -1.567 -1.371 2.102 sum -31.009 -5.149 3.675 31.647 Atomic orbital electron populations 1.21789 0.92478 1.03068 1.03680 1.22870 0.96135 0.81609 1.01713 1.86055 1.18945 1.29802 1.87810 1.19270 0.82354 0.94201 0.93397 1.21165 0.94001 0.98347 1.10182 1.21091 0.94669 0.96155 0.94366 1.19883 0.93230 0.94112 1.10258 1.18106 0.86046 0.84671 0.76473 1.90809 1.77384 1.23491 1.49633 1.45862 1.07361 1.08900 1.75626 1.21410 0.77345 0.97875 1.03607 1.22198 0.90316 0.95374 1.00537 1.61877 1.01837 1.24993 1.36702 1.23011 1.00853 0.97461 0.88498 1.20870 0.84624 0.88201 1.01137 1.44131 1.30657 1.27696 1.29399 1.19229 1.02863 0.92043 1.24082 0.91611 1.25025 0.97901 0.95515 1.01263 1.70040 1.42753 1.00354 1.41521 0.86238 0.80625 0.78063 0.81937 1.20341 1.21593 1.21697 1.20971 0.90140 0.95763 0.90983 1.22629 0.97545 0.89224 0.98914 1.21119 0.91447 0.99326 0.91841 1.20435 0.95042 0.94995 1.07460 0.91400 0.91402 0.90182 0.91710 0.91709 0.84876 0.85294 0.76926 0.90896 0.90237 0.90893 0.95013 0.95601 0.91724 0.95414 0.89303 0.93632 0.95596 0.92564 0.91987 0.95363 0.83740 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 10.28 37.16 0.38 -0.12 16 2 C 0.05 0.24 5.45 37.16 0.20 0.44 16 3 O -0.31 -2.41 10.12 -18.82 -0.19 -2.61 16 4 C 0.15 1.27 6.70 -39.02 -0.26 1.01 16 5 C -0.22 -1.56 9.01 -39.50 -0.36 -1.91 16 6 C -0.04 -0.34 9.53 -39.22 -0.37 -0.71 16 7 C -0.17 -1.77 5.87 -104.96 -0.62 -2.38 16 8 C 0.56 7.24 7.76 -12.44 -0.10 7.15 16 9 O -0.54 -9.07 16.34 5.29 0.09 -8.98 16 10 N -0.73 -8.01 5.51 -61.33 -0.34 -8.35 16 11 C 0.12 1.63 5.60 -4.04 -0.02 1.60 16 12 C 0.04 0.59 5.08 -3.82 -0.02 0.57 16 13 N -0.53 -9.19 4.63 -234.31 -1.08 -10.28 16 14 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 15 C 0.18 4.34 5.42 -3.60 -0.02 4.32 16 16 N -0.60 -15.17 3.04 -172.01 -0.52 -15.69 16 17 C -0.25 -6.99 9.63 -15.06 -0.15 -7.14 16 18 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 19 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 20 N -0.90 -26.48 11.15 55.49 0.62 -25.86 16 21 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C 0.15 3.14 6.69 -3.60 -0.02 3.12 16 26 C 0.05 0.81 5.62 -3.70 -0.02 0.79 16 27 C -0.02 -0.18 9.58 -39.22 -0.38 -0.56 16 28 C -0.16 -1.37 9.97 -39.49 -0.39 -1.77 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 33 H 0.06 0.24 7.64 -51.93 -0.40 -0.16 16 34 H 0.13 0.63 6.28 -52.48 -0.33 0.30 16 35 H 0.13 0.67 6.39 -52.49 -0.34 0.34 16 36 H 0.40 3.10 6.49 -40.82 -0.27 2.84 16 37 H 0.07 1.11 6.40 -51.93 -0.33 0.78 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 0.83 7.97 -51.93 -0.41 0.42 16 40 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 48 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 49 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.14 1.42 7.64 -52.49 -0.40 1.01 16 51 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 406.52 15.07 6.13 6.13 Total: -1.00 -33.65 406.52 -10.69 -44.35 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.11 Total: -0.42 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.25 Total: 4.94 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -1.33 Total: -60.17 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.10 Total: -11.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.65 -10.69 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690080596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.342 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds