Wall clock time and date at job start Wed Apr 1 2020 04:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.47050 * 2 1 4 4 C 1.35707 * 116.99643 * 180.02562 * 3 2 1 5 5 C 1.38998 * 119.91737 * 359.72853 * 4 3 2 6 6 C 1.37701 * 120.09197 * 179.72654 * 5 4 3 7 7 C 1.39738 * 119.90576 * 0.56578 * 6 5 4 8 8 C 1.47598 * 120.08259 * 179.72549 * 7 6 5 9 9 O 1.21588 * 120.00110 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00534 * 359.97438 * 8 7 6 11 11 C 1.46493 * 120.00380 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47085 * 180.02562 * 11 10 8 13 13 N 1.46903 * 109.46853 * 180.02562 * 12 11 10 14 14 C 1.46902 * 110.99942 * 294.29578 * 13 12 11 15 15 C 1.53237 * 109.33786 * 172.74766 * 14 13 12 16 16 N 1.47081 * 108.52313 * 53.83478 * 15 14 13 17 17 C 1.36939 * 120.88270 * 128.83548 * 16 15 14 18 18 H 1.08002 * 119.99822 * 206.56754 * 17 16 15 19 19 C 1.38805 * 119.99875 * 26.55601 * 17 16 15 20 20 N 1.31622 * 120.00441 * 17.03235 * 19 17 16 21 21 Si 1.86809 * 120.00053 * 197.02945 * 19 17 16 22 22 H 1.48498 * 109.47002 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46965 * 120.00228 * 21 19 17 24 24 H 1.48498 * 109.46972 * 240.00720 * 21 19 17 25 25 C 1.47080 * 118.23662 * 308.81416 * 16 15 14 26 26 C 1.46905 * 110.99875 * 170.00084 * 13 12 11 27 27 C 1.39734 * 119.82839 * 359.71287 * 7 6 5 28 28 C 1.37699 * 119.90891 * 359.97438 * 27 7 6 29 29 H 1.09003 * 109.46769 * 299.99916 * 1 2 3 30 30 H 1.09003 * 109.46974 * 59.99494 * 1 2 3 31 31 H 1.08995 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47085 * 240.00493 * 2 1 3 33 33 H 1.08994 * 109.47078 * 120.00716 * 2 1 3 34 34 H 1.08003 * 119.94834 * 0.02562 * 5 4 3 35 35 H 1.07993 * 120.04537 * 180.25381 * 6 5 4 36 36 H 0.97008 * 119.99287 * 0.02562 * 10 8 7 37 37 H 1.09006 * 109.47204 * 299.99511 * 11 10 8 38 38 H 1.08997 * 109.47661 * 60.00025 * 11 10 8 39 39 H 1.08996 * 109.47120 * 299.99812 * 12 11 10 40 40 H 1.08998 * 109.47383 * 59.99787 * 12 11 10 41 41 H 1.08997 * 109.49614 * 292.71210 * 14 13 12 42 42 H 1.09001 * 109.48697 * 52.79205 * 14 13 12 43 43 H 1.08998 * 109.63127 * 294.12579 * 15 14 13 44 44 H 1.09004 * 109.62539 * 173.54435 * 15 14 13 45 45 H 0.97001 * 120.00179 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.62770 * 291.47715 * 25 16 15 47 47 H 1.09000 * 109.78617 * 170.98396 * 25 16 15 48 48 H 1.09004 * 109.49252 * 307.21166 * 26 13 12 49 49 H 1.09002 * 109.48990 * 67.28965 * 26 13 12 50 50 H 1.07998 * 120.04479 * 180.02562 * 27 7 6 51 51 H 1.07996 * 119.95474 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5251 -0.0005 5 6 4.1969 0.4215 0.0046 6 6 5.5625 0.5976 -0.0016 7 6 6.0986 1.8881 -0.0011 8 6 7.5618 2.0815 -0.0017 9 8 8.0266 3.2050 -0.0018 10 7 8.3829 1.0126 -0.0020 11 6 9.8352 1.2046 -0.0031 12 6 10.5298 -0.1587 -0.0040 13 7 11.9861 0.0338 -0.0045 14 6 12.4336 0.6627 -1.2544 15 6 13.9218 1.0105 -1.1430 16 7 14.6580 -0.2037 -0.7596 17 6 15.7561 -0.6130 -1.4680 18 1 16.0296 -1.6577 -1.4842 19 6 16.5174 0.3147 -2.1654 20 7 16.4056 1.5972 -1.8914 21 14 17.7010 -0.2570 -3.4929 22 1 17.6395 -1.7363 -3.6072 23 1 17.3217 0.3556 -4.7913 24 1 19.0821 0.1553 -3.1356 25 6 14.1837 -0.9664 0.4052 26 6 12.6851 -1.2363 0.2328 27 6 5.2457 2.9950 -0.0005 28 6 3.8811 2.8103 -0.0008 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.7817 -0.5755 0.0087 35 1 6.2184 -0.2603 -0.0017 36 1 8.0120 0.1163 -0.0023 37 1 10.1275 1.7613 -0.8935 38 1 10.1288 1.7617 0.8865 39 1 10.2376 -0.7159 0.8861 40 1 10.2362 -0.7156 -0.8938 41 1 12.2826 -0.0282 -2.0837 42 1 11.8595 1.5727 -1.4294 43 1 14.0624 1.7791 -0.3830 44 1 14.2864 1.3715 -2.1047 45 1 16.9380 2.2455 -2.3785 46 1 14.3493 -0.3878 1.3139 47 1 14.7210 -1.9125 0.4704 48 1 12.2935 -1.7037 1.1363 49 1 12.5306 -1.9008 -0.6173 50 1 5.6562 3.9939 -0.0006 51 1 3.2213 3.6653 -0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690080596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:17 Heat of formation + Delta-G solvation = -37.135569 kcal Electronic energy + Delta-G solvation = -29338.585272 eV Core-core repulsion = 25238.128172 eV Total energy + Delta-G solvation = -4100.457099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.51763 -40.58951 -39.72187 -38.18308 -36.86134 -35.49869 -33.42038 -32.93766 -32.00213 -31.65031 -31.25046 -29.83648 -27.60205 -25.37096 -24.84825 -24.44188 -24.16879 -22.92865 -22.40314 -21.51614 -20.82122 -19.51480 -18.78867 -18.55529 -17.57498 -17.09497 -16.99100 -16.65500 -16.49683 -16.10391 -15.93643 -15.69765 -15.39248 -15.28828 -15.10389 -14.93119 -14.75677 -14.62845 -14.35157 -14.23511 -14.06045 -13.72604 -13.21668 -13.20527 -13.01934 -12.91815 -12.83607 -12.65348 -12.63454 -12.54829 -12.20810 -12.02975 -11.85767 -11.77965 -11.66149 -11.55567 -11.43106 -11.10796 -10.60071 -10.19638 -10.13832 -9.30208 -9.29440 -8.68812 -7.87712 -5.32648 -0.15859 0.28777 1.45804 1.47248 1.58097 1.79654 1.99718 2.16173 2.50657 2.80653 3.08747 3.28181 3.66409 3.67977 3.72651 3.83767 3.88350 4.07567 4.08176 4.11397 4.19577 4.29689 4.35235 4.36788 4.39742 4.46151 4.51607 4.55443 4.65329 4.71468 4.81726 4.85268 4.92307 4.93061 4.96014 4.99078 5.04688 5.07695 5.16515 5.20927 5.28166 5.31614 5.34708 5.37992 5.61142 5.61474 5.67651 6.14069 6.23219 6.34499 6.37075 6.50270 7.12752 7.17778 7.83965 8.38133 9.19365 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025069 B = 0.001554 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.658305 B =18008.617169 C =18366.757542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.327 6.327 4 C 0.153 3.847 5 C -0.214 4.214 6 C -0.034 4.034 7 C -0.192 4.192 8 C 0.557 3.443 9 O -0.587 6.587 10 N -0.708 5.708 11 C 0.129 3.871 12 C 0.055 3.945 13 N -0.543 5.543 14 C 0.050 3.950 15 C 0.185 3.815 16 N -0.614 5.614 17 C -0.262 4.262 18 H 0.071 0.929 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.140 3.860 26 C 0.058 3.942 27 C -0.031 4.031 28 C -0.169 4.169 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.415 0.585 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.074 0.926 43 H -0.005 1.005 44 H 0.055 0.945 45 H 0.249 0.751 46 H 0.014 0.986 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.030 0.970 50 H 0.132 0.868 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.213 -8.485 4.943 35.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.106 3.894 5 C -0.232 4.232 6 C -0.053 4.053 7 C -0.195 4.195 8 C 0.347 3.653 9 O -0.469 6.469 10 N -0.361 5.361 11 C 0.005 3.995 12 C -0.073 4.073 13 N -0.268 5.268 14 C -0.080 4.080 15 C 0.059 3.941 16 N -0.338 5.338 17 C -0.393 4.393 18 H 0.088 0.912 19 C -0.249 4.249 20 N -0.584 5.584 21 Si 0.797 3.203 22 H -0.188 1.188 23 H -0.218 1.218 24 H -0.220 1.220 25 C 0.015 3.985 26 C -0.071 4.071 27 C -0.050 4.050 28 C -0.188 4.188 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.013 0.987 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.032 0.968 47 H 0.082 0.918 48 H 0.120 0.880 49 H 0.048 0.952 50 H 0.150 0.850 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -33.814 -7.184 5.267 34.967 hybrid contribution 0.937 -0.501 -1.350 1.717 sum -32.877 -7.685 3.918 33.990 Atomic orbital electron populations 1.21826 0.91752 1.04214 1.03140 1.23179 0.96806 0.80335 1.02948 1.86056 1.18539 1.31952 1.87487 1.19432 0.82991 0.94364 0.92599 1.21481 0.93522 0.99357 1.08859 1.21360 0.95450 0.95702 0.92752 1.19759 0.91435 0.95580 1.12762 1.18569 0.87282 0.84142 0.75348 1.90781 1.78396 1.25529 1.52168 1.45622 1.06151 1.09622 1.74744 1.21151 0.78790 0.97891 1.01700 1.22192 0.87069 0.95281 1.02795 1.61750 1.04620 1.25352 1.35124 1.22610 0.97364 0.98223 0.89763 1.20596 0.87863 0.87516 0.98148 1.44417 1.30540 1.28049 1.30829 1.19600 1.03243 0.92312 1.24100 0.91154 1.25820 0.99997 0.95577 1.03459 1.70210 1.44022 1.01484 1.42696 0.85188 0.78082 0.78215 0.78844 1.18831 1.21791 1.21965 1.21175 0.93205 0.95197 0.88931 1.22476 0.94638 0.89124 1.00816 1.21100 0.92163 0.99017 0.92688 1.20523 0.94576 0.96013 1.07686 0.91922 0.91992 0.88178 0.90452 0.90345 0.81865 0.82341 0.74631 0.93129 0.92110 0.87730 0.93330 0.95771 0.90767 0.98683 0.92689 0.94144 0.96764 0.91781 0.88004 0.95213 0.84998 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 71.98 0.74 0.08 16 2 C 0.04 0.26 5.45 71.98 0.39 0.65 16 3 O -0.33 -4.39 10.12 -90.27 -0.91 -5.31 16 4 C 0.15 2.23 6.70 22.64 0.15 2.38 16 5 C -0.21 -2.33 9.01 22.33 0.20 -2.13 16 6 C -0.03 -0.42 9.53 22.51 0.21 -0.21 16 7 C -0.19 -3.79 5.87 -20.08 -0.12 -3.90 16 8 C 0.56 14.27 7.76 86.71 0.67 14.95 16 9 O -0.59 -20.76 16.34 -3.99 -0.07 -20.83 16 10 N -0.71 -14.29 5.51 -466.21 -2.57 -16.85 16 11 C 0.13 3.31 5.60 86.38 0.48 3.79 16 12 C 0.05 1.26 5.08 86.30 0.44 1.69 16 13 N -0.54 -17.82 4.63 -895.22 -4.15 -21.97 16 14 C 0.05 1.94 5.46 86.38 0.47 2.41 16 15 C 0.18 9.37 5.42 86.35 0.47 9.84 16 16 N -0.61 -31.69 3.04 -698.13 -2.12 -33.81 16 17 C -0.26 -14.66 9.63 84.03 0.81 -13.85 16 18 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 19 C -0.05 -3.04 4.94 84.86 0.42 -2.62 16 20 N -0.94 -57.09 11.15 21.65 0.24 -56.85 16 21 Si 0.97 45.45 29.59 68.60 2.03 47.48 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 C 0.14 5.83 6.69 86.35 0.58 6.41 16 26 C 0.06 1.86 5.62 86.38 0.49 2.35 16 27 C -0.03 -0.61 9.58 22.50 0.22 -0.40 16 28 C -0.17 -2.82 9.97 22.33 0.22 -2.60 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 32 H 0.08 0.30 7.66 -2.39 -0.02 0.29 16 33 H 0.08 0.29 7.64 -2.39 -0.02 0.27 16 34 H 0.16 0.76 6.28 -2.91 -0.02 0.74 16 35 H 0.16 0.92 6.39 -2.91 -0.02 0.90 16 36 H 0.42 4.97 6.49 -92.70 -0.60 4.36 16 37 H 0.05 1.54 6.40 -2.38 -0.02 1.52 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 1.83 7.97 -2.39 -0.02 1.81 16 40 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 2.74 6.16 -2.39 -0.01 2.72 16 43 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.05 3.13 6.12 -2.39 -0.01 3.11 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 46 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.06 2.51 7.96 -2.39 -0.02 2.49 16 48 H 0.10 2.49 7.99 -2.39 -0.02 2.47 16 49 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.13 2.85 7.64 -2.91 -0.02 2.83 16 51 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -76.98 406.52 -0.36 -77.35 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.33 Total: 11.93 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.85 Total: 18.85 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -8.59 Total: -129.48 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.98 Total: -26.13 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.98 -0.36 -77.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690080596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.214 kcal (2) G-P(sol) polarization free energy of solvation -76.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds