Wall clock time and date at job start Wed Apr 1 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46920 * 2 1 4 4 C 1.35434 * 116.99467 * 180.02562 * 3 2 1 5 5 N 1.32232 * 119.80113 * 0.02562 * 4 3 2 6 6 C 1.31878 * 121.79789 * 179.97438 * 5 4 3 7 7 C 1.38354 * 121.19112 * 0.02562 * 6 5 4 8 8 C 1.38342 * 119.45457 * 359.74271 * 7 6 5 9 9 C 1.39990 * 118.35020 * 0.49593 * 8 7 6 10 10 C 1.47517 * 120.60211 * 179.77981 * 9 8 7 11 11 O 1.21585 * 120.00424 * 218.07522 * 10 9 8 12 12 N 1.34778 * 119.99532 * 38.06892 * 10 9 8 13 13 C 1.46959 * 120.65715 * 5.97255 * 12 10 9 14 14 C 1.53192 * 108.88775 * 126.46613 * 13 12 10 15 15 C 1.53046 * 109.30992 * 54.56185 * 14 13 12 16 16 C 1.53043 * 109.53601 * 298.63461 * 15 14 13 17 17 H 1.08998 * 109.49368 * 181.32086 * 16 15 14 18 18 C 1.53000 * 109.52142 * 301.39646 * 16 15 14 19 19 C 1.46925 * 120.62878 * 185.79647 * 12 10 9 20 20 H 1.09001 * 109.58605 * 113.67247 * 19 12 10 21 21 C 1.53004 * 109.58708 * 353.39091 * 19 12 10 22 22 N 1.46503 * 109.46941 * 69.82265 * 21 19 12 23 23 C 1.36940 * 120.00237 * 175.06648 * 22 21 19 24 24 H 1.07997 * 119.99194 * 0.27417 * 23 22 21 25 25 C 1.38808 * 120.00281 * 180.27668 * 23 22 21 26 26 N 1.31623 * 120.00044 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00113 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46852 * 59.99641 * 27 25 23 29 29 H 1.48499 * 109.47386 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47024 * 300.00238 * 27 25 23 31 31 H 1.08994 * 109.47318 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46946 * 300.00601 * 1 2 3 33 33 H 1.09004 * 109.46979 * 59.99726 * 1 2 3 34 34 H 1.08990 * 109.47001 * 239.99582 * 2 1 3 35 35 H 1.09005 * 109.46842 * 119.99739 * 2 1 3 36 36 H 1.08007 * 119.40507 * 180.02562 * 6 5 4 37 37 H 1.07997 * 120.27355 * 180.02562 * 7 6 5 38 38 H 1.08003 * 120.82610 * 180.25356 * 8 7 6 39 39 H 1.09004 * 109.59365 * 6.61486 * 13 12 10 40 40 H 1.08996 * 109.58922 * 246.32176 * 13 12 10 41 41 H 1.09002 * 109.50252 * 294.61135 * 14 13 12 42 42 H 1.08998 * 109.49649 * 174.50747 * 14 13 12 43 43 H 1.09000 * 109.45690 * 178.61294 * 15 14 13 44 44 H 1.08994 * 109.46039 * 58.65719 * 15 14 13 45 45 H 1.09000 * 109.47040 * 179.85865 * 18 16 15 46 46 H 1.09002 * 109.47195 * 299.85265 * 18 16 15 47 47 H 1.08997 * 109.47281 * 59.85933 * 18 16 15 48 48 H 1.08993 * 109.47123 * 309.82229 * 21 19 12 49 49 H 1.09004 * 109.46832 * 189.81521 * 21 19 12 50 50 H 0.97002 * 119.99845 * 355.34232 * 22 21 19 51 51 H 0.97001 * 119.99849 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0015 6 6 5.4635 0.6002 -0.0026 7 6 6.0626 1.8473 -0.0022 8 6 5.2714 2.9821 -0.0060 9 6 3.8806 2.8229 0.0004 10 6 2.9901 3.9990 0.0016 11 8 1.9651 3.9848 0.6554 12 7 3.3128 5.0892 -0.7221 13 6 4.4773 5.0759 -1.6185 14 6 4.0302 5.5075 -3.0187 15 6 3.3216 6.8610 -2.9289 16 6 2.0797 6.7308 -2.0440 17 1 1.5627 7.6893 -1.9996 18 6 1.1433 5.6722 -2.6298 19 6 2.5047 6.3130 -0.6329 20 1 3.0953 7.1085 -0.1785 21 6 1.2621 6.0461 0.2190 22 7 1.6588 5.8638 1.6175 23 6 0.7028 5.7121 2.5862 24 1 -0.3434 5.7225 2.3186 25 6 1.0785 5.5451 3.9120 26 7 2.3537 5.5319 4.2380 27 14 -0.2255 5.3375 5.2333 28 1 -1.0426 4.1333 4.9374 29 1 0.4308 5.1772 6.5557 30 1 -1.1014 6.5364 5.2569 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 6.0819 -0.2852 -0.0038 37 1 7.1391 1.9341 -0.0035 38 1 5.7157 3.9665 -0.0099 39 1 4.8936 4.0694 -1.6620 40 1 5.2327 5.7681 -1.2466 41 1 3.3451 4.7645 -3.4271 42 1 4.9015 5.5954 -3.6678 43 1 3.0242 7.1821 -3.9272 44 1 3.9992 7.5978 -2.4976 45 1 0.2603 5.5783 -1.9976 46 1 0.8411 5.9699 -3.6339 47 1 1.6611 4.7141 -2.6752 48 1 0.7637 5.1449 -0.1377 49 1 0.5803 6.8931 0.1423 50 1 2.5985 5.8544 1.8578 51 1 2.6162 5.4148 5.1645 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715481110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:21 Heat of formation + Delta-G solvation = 24.453763 kcal Electronic energy + Delta-G solvation = -33424.092141 eV Core-core repulsion = 29326.305756 eV Total energy + Delta-G solvation = -4097.786385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.91743 -39.79913 -37.85134 -37.05394 -34.65431 -33.42852 -32.14840 -31.94290 -31.78996 -30.12610 -29.74424 -27.00484 -26.09747 -24.61600 -24.05272 -23.53027 -22.63795 -22.06161 -21.16984 -20.05305 -18.60295 -18.10966 -17.17445 -16.68823 -16.39164 -16.12101 -15.41174 -15.14721 -15.02949 -14.81623 -14.28308 -14.14687 -13.81291 -13.71635 -13.63283 -13.47547 -13.18636 -12.86550 -12.73174 -12.47637 -12.41923 -12.21573 -12.20378 -12.13472 -11.95146 -11.46264 -11.35341 -11.27750 -10.92753 -10.84898 -10.64229 -10.62358 -10.56572 -10.30320 -10.16652 -9.82258 -9.70292 -9.59285 -9.44375 -8.66953 -8.40638 -8.11152 -7.95574 -6.44706 -5.49661 -2.68051 0.97498 1.35087 3.16072 3.42735 3.45242 3.59445 3.62358 3.64088 4.01747 4.33337 4.75399 4.79214 4.83850 4.87356 4.96088 5.06127 5.08903 5.14248 5.15194 5.17892 5.28080 5.36909 5.46223 5.48694 5.52985 5.61972 5.77325 5.78788 5.83178 5.85704 5.87354 5.94365 5.97978 5.98903 6.01146 6.07434 6.14695 6.19659 6.23401 6.26504 6.38068 6.45448 6.57991 6.62126 6.77168 7.03797 7.39723 7.45505 7.86070 7.92835 8.06023 8.68775 9.05843 9.79806 10.40405 10.74456 11.74386 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007346 B = 0.005590 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3810.443989 B = 5007.579602 C = 6786.147263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.277 6.277 4 C 0.364 3.636 5 N -0.547 5.547 6 C 0.148 3.852 7 C -0.223 4.223 8 C -0.020 4.020 9 C -0.180 4.180 10 C 0.524 3.476 11 O -0.418 6.418 12 N -0.610 5.610 13 C 0.102 3.898 14 C -0.136 4.136 15 C -0.112 4.112 16 C -0.100 4.100 17 H 0.078 0.922 18 C -0.143 4.143 19 C 0.150 3.850 20 H 0.067 0.933 21 C 0.158 3.842 22 N -0.696 5.696 23 C -0.203 4.203 24 H 0.064 0.936 25 C -0.022 4.022 26 N -0.939 5.939 27 Si 0.901 3.099 28 H -0.290 1.290 29 H -0.294 1.294 30 H -0.290 1.290 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.158 0.842 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.012 0.988 50 H 0.378 0.622 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -6.315 -17.949 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.182 6.182 4 C 0.184 3.816 5 N -0.271 5.271 6 C -0.009 4.009 7 C -0.243 4.243 8 C -0.045 4.045 9 C -0.187 4.187 10 C 0.308 3.692 11 O -0.285 6.285 12 N -0.348 5.348 13 C -0.021 4.021 14 C -0.174 4.174 15 C -0.149 4.149 16 C -0.120 4.120 17 H 0.096 0.904 18 C -0.200 4.200 19 C 0.046 3.954 20 H 0.085 0.915 21 C 0.031 3.969 22 N -0.339 5.339 23 C -0.335 4.335 24 H 0.082 0.918 25 C -0.217 4.217 26 N -0.590 5.590 27 Si 0.733 3.267 28 H -0.217 1.217 29 H -0.221 1.221 30 H -0.217 1.217 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.175 0.825 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.029 0.971 50 H 0.212 0.788 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.594 -6.998 -17.444 19.919 hybrid contribution 0.389 0.378 0.938 1.083 sum 6.983 -6.620 -16.506 19.106 Atomic orbital electron populations 1.21792 0.92978 1.02297 1.03923 1.22599 0.95084 0.81333 1.01873 1.86443 1.15891 1.29828 1.85992 1.19741 0.84424 0.88492 0.88895 1.67392 1.06579 1.32650 1.20525 1.22473 0.89220 0.97361 0.91843 1.21855 1.01305 0.93108 1.08037 1.21757 0.91455 0.99933 0.91387 1.20230 0.94450 0.93134 1.10868 1.17715 0.87348 0.82282 0.81887 1.91211 1.22227 1.78059 1.37018 1.47642 1.29448 1.13052 1.44698 1.21915 0.88607 1.01919 0.89676 1.21963 1.00487 0.98137 0.96833 1.21525 0.96962 0.96908 0.99550 1.21463 0.96075 0.99533 0.94889 0.90354 1.21839 0.99636 0.98907 0.99652 1.21471 0.93512 0.85719 0.94648 0.91487 1.21011 0.92364 0.97720 0.85830 1.42246 1.06117 1.85090 1.00402 1.19098 0.88647 1.38677 0.87043 0.91807 1.24587 0.95728 1.04337 0.97001 1.69644 1.13759 1.58805 1.16754 0.86335 0.80931 0.77744 0.81681 1.21707 1.22060 1.21696 0.90692 0.91040 0.91781 0.92097 0.91760 0.82484 0.84398 0.83681 0.89813 0.91948 0.91301 0.91418 0.92107 0.91939 0.91973 0.93579 0.92494 0.93271 0.97062 0.78835 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 37.16 0.38 -1.59 16 2 C 0.07 0.98 6.03 37.16 0.22 1.20 16 3 O -0.28 -5.23 8.87 -34.29 -0.30 -5.53 16 4 C 0.36 6.51 7.48 -16.61 -0.12 6.39 16 5 N -0.55 -8.41 9.21 -12.98 -0.12 -8.53 16 6 C 0.15 1.77 11.17 -17.49 -0.20 1.57 16 7 C -0.22 -2.49 10.09 -39.50 -0.40 -2.89 16 8 C -0.02 -0.27 7.49 -38.89 -0.29 -0.56 16 9 C -0.18 -3.17 5.21 -104.69 -0.55 -3.71 16 10 C 0.52 10.44 6.61 -12.48 -0.08 10.36 16 11 O -0.42 -10.41 9.91 -11.00 -0.11 -10.52 16 12 N -0.61 -9.95 2.43 -166.42 -0.40 -10.35 16 13 C 0.10 1.22 4.86 -3.69 -0.02 1.20 16 14 C -0.14 -1.38 5.74 -26.61 -0.15 -1.53 16 15 C -0.11 -1.18 5.43 -26.69 -0.14 -1.32 16 16 C -0.10 -1.32 2.79 -90.50 -0.25 -1.58 16 17 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.14 -1.93 8.22 37.16 0.31 -1.63 16 19 C 0.15 2.56 2.62 -67.60 -0.18 2.38 16 20 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 21 C 0.16 3.46 4.03 -4.04 -0.02 3.44 16 22 N -0.70 -18.86 3.24 -59.91 -0.19 -19.05 16 23 C -0.20 -6.10 9.72 -15.06 -0.15 -6.25 16 24 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 26 N -0.94 -30.25 13.06 55.49 0.72 -29.52 16 27 Si 0.90 24.21 29.55 -169.99 -5.02 19.19 16 28 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 29 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 30 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.15 1.72 6.44 -52.48 -0.34 1.38 16 39 H 0.08 0.94 4.64 -51.93 -0.24 0.70 16 40 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.07 0.76 6.34 -51.93 -0.33 0.43 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.95 6.57 -51.93 -0.34 0.60 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.82 5.98 -51.93 -0.31 0.51 16 48 H 0.05 1.17 5.06 -51.93 -0.26 0.91 16 49 H 0.01 0.26 8.12 -51.93 -0.42 -0.16 16 50 H 0.38 10.92 7.12 -40.82 -0.29 10.63 16 51 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -36.66 390.97 -9.26 -45.92 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.99 Total: 7.80 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -1.73 Total: 4.70 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: 0.01 Total: -67.46 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.41 Total: -16.05 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.02 Total: 19.19 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.66 -9.26 -45.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715481110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.378 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds