Wall clock time and date at job start Wed Apr 1 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46920 * 2 1 4 4 C 1.35434 * 116.99467 * 180.02562 * 3 2 1 5 5 N 1.32232 * 119.80113 * 0.02562 * 4 3 2 6 6 C 1.31878 * 121.79789 * 179.97438 * 5 4 3 7 7 C 1.38354 * 121.19112 * 0.02562 * 6 5 4 8 8 C 1.38342 * 119.45457 * 359.74271 * 7 6 5 9 9 C 1.39990 * 118.35020 * 0.49593 * 8 7 6 10 10 C 1.47517 * 120.60211 * 179.77981 * 9 8 7 11 11 O 1.21585 * 120.00424 * 218.07522 * 10 9 8 12 12 N 1.34778 * 119.99532 * 38.06892 * 10 9 8 13 13 C 1.46959 * 120.65715 * 5.97255 * 12 10 9 14 14 C 1.53192 * 108.88775 * 126.46613 * 13 12 10 15 15 C 1.53046 * 109.30992 * 54.56185 * 14 13 12 16 16 C 1.53043 * 109.53601 * 298.63461 * 15 14 13 17 17 H 1.08998 * 109.49368 * 181.32086 * 16 15 14 18 18 C 1.53000 * 109.52142 * 301.39646 * 16 15 14 19 19 C 1.46925 * 120.62878 * 185.79647 * 12 10 9 20 20 H 1.09001 * 109.58605 * 113.67247 * 19 12 10 21 21 C 1.53004 * 109.58708 * 353.39091 * 19 12 10 22 22 N 1.46503 * 109.46941 * 69.82265 * 21 19 12 23 23 C 1.36940 * 120.00237 * 175.06648 * 22 21 19 24 24 H 1.07997 * 119.99194 * 0.27417 * 23 22 21 25 25 C 1.38808 * 120.00281 * 180.27668 * 23 22 21 26 26 N 1.31623 * 120.00044 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00113 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46852 * 59.99641 * 27 25 23 29 29 H 1.48499 * 109.47386 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47024 * 300.00238 * 27 25 23 31 31 H 1.08994 * 109.47318 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46946 * 300.00601 * 1 2 3 33 33 H 1.09004 * 109.46979 * 59.99726 * 1 2 3 34 34 H 1.08990 * 109.47001 * 239.99582 * 2 1 3 35 35 H 1.09005 * 109.46842 * 119.99739 * 2 1 3 36 36 H 1.08007 * 119.40507 * 180.02562 * 6 5 4 37 37 H 1.07997 * 120.27355 * 180.02562 * 7 6 5 38 38 H 1.08003 * 120.82610 * 180.25356 * 8 7 6 39 39 H 1.09004 * 109.59365 * 6.61486 * 13 12 10 40 40 H 1.08996 * 109.58922 * 246.32176 * 13 12 10 41 41 H 1.09002 * 109.50252 * 294.61135 * 14 13 12 42 42 H 1.08998 * 109.49649 * 174.50747 * 14 13 12 43 43 H 1.09000 * 109.45690 * 178.61294 * 15 14 13 44 44 H 1.08994 * 109.46039 * 58.65719 * 15 14 13 45 45 H 1.09000 * 109.47040 * 179.85865 * 18 16 15 46 46 H 1.09002 * 109.47195 * 299.85265 * 18 16 15 47 47 H 1.08997 * 109.47281 * 59.85933 * 18 16 15 48 48 H 1.08993 * 109.47123 * 309.82229 * 21 19 12 49 49 H 1.09004 * 109.46832 * 189.81521 * 21 19 12 50 50 H 0.97002 * 119.99845 * 355.34232 * 22 21 19 51 51 H 0.97001 * 119.99849 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0015 6 6 5.4635 0.6002 -0.0026 7 6 6.0626 1.8473 -0.0022 8 6 5.2714 2.9821 -0.0060 9 6 3.8806 2.8229 0.0004 10 6 2.9901 3.9990 0.0016 11 8 1.9651 3.9848 0.6554 12 7 3.3128 5.0892 -0.7221 13 6 4.4773 5.0759 -1.6185 14 6 4.0302 5.5075 -3.0187 15 6 3.3216 6.8610 -2.9289 16 6 2.0797 6.7308 -2.0440 17 1 1.5627 7.6893 -1.9996 18 6 1.1433 5.6722 -2.6298 19 6 2.5047 6.3130 -0.6329 20 1 3.0953 7.1085 -0.1785 21 6 1.2621 6.0461 0.2190 22 7 1.6588 5.8638 1.6175 23 6 0.7028 5.7121 2.5862 24 1 -0.3434 5.7225 2.3186 25 6 1.0785 5.5451 3.9120 26 7 2.3537 5.5319 4.2380 27 14 -0.2255 5.3375 5.2333 28 1 -1.0426 4.1333 4.9374 29 1 0.4308 5.1772 6.5557 30 1 -1.1014 6.5364 5.2569 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 6.0819 -0.2852 -0.0038 37 1 7.1391 1.9341 -0.0035 38 1 5.7157 3.9665 -0.0099 39 1 4.8936 4.0694 -1.6620 40 1 5.2327 5.7681 -1.2466 41 1 3.3451 4.7645 -3.4271 42 1 4.9015 5.5954 -3.6678 43 1 3.0242 7.1821 -3.9272 44 1 3.9992 7.5978 -2.4976 45 1 0.2603 5.5783 -1.9976 46 1 0.8411 5.9699 -3.6339 47 1 1.6611 4.7141 -2.6752 48 1 0.7637 5.1449 -0.1377 49 1 0.5803 6.8931 0.1423 50 1 2.5985 5.8544 1.8578 51 1 2.6162 5.4148 5.1645 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715481110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:20 Heat of formation + Delta-G solvation = -0.874718 kcal Electronic energy + Delta-G solvation = -33425.190466 eV Core-core repulsion = 29326.305756 eV Total energy + Delta-G solvation = -4098.884711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15346 -41.04200 -39.03993 -38.38295 -36.42766 -34.89011 -33.68163 -33.09241 -32.98255 -31.82198 -30.95408 -28.46684 -27.31485 -26.12298 -25.33335 -24.73701 -24.21517 -23.25339 -22.57063 -21.29162 -19.85969 -19.37847 -18.96850 -17.93645 -17.78785 -17.34137 -16.79711 -16.66050 -16.19357 -16.02707 -15.83628 -15.46945 -15.21634 -15.02593 -14.94693 -14.75895 -14.58428 -14.37032 -14.04512 -13.81880 -13.65920 -13.48576 -13.35579 -13.27378 -13.22092 -12.94184 -12.80663 -12.62195 -12.49701 -12.42799 -12.16813 -12.00518 -11.84042 -11.76577 -11.61339 -11.31256 -11.22795 -10.87420 -10.79018 -10.73574 -9.79537 -9.49796 -9.32105 -8.60765 -7.84248 -5.02066 -0.14085 0.26752 1.39250 1.44771 1.49671 2.00416 2.15238 2.15887 2.60449 2.82275 3.28226 3.48856 3.65617 3.80260 3.84265 3.92788 3.96729 4.00053 4.00948 4.12112 4.15197 4.26936 4.29622 4.34617 4.40893 4.45485 4.53756 4.57983 4.66462 4.75461 4.83185 4.83517 4.85369 4.91194 4.92053 4.97568 5.03135 5.11870 5.13422 5.13495 5.26959 5.29796 5.32454 5.42759 5.48834 5.51521 5.58510 5.91360 6.28637 6.37286 6.65776 6.82025 7.42963 7.62890 8.24252 8.47079 9.40454 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007346 B = 0.005590 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3810.443989 B = 5007.579602 C = 6786.147263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 O -0.313 6.313 4 C 0.338 3.662 5 N -0.559 5.559 6 C 0.150 3.850 7 C -0.203 4.203 8 C -0.017 4.017 9 C -0.218 4.218 10 C 0.524 3.476 11 O -0.489 6.489 12 N -0.604 5.604 13 C 0.094 3.906 14 C -0.130 4.130 15 C -0.106 4.106 16 C -0.094 4.094 17 H 0.086 0.914 18 C -0.136 4.136 19 C 0.154 3.846 20 H 0.063 0.937 21 C 0.164 3.836 22 N -0.703 5.703 23 C -0.206 4.206 24 H 0.058 0.942 25 C -0.085 4.085 26 N -0.973 5.973 27 Si 0.964 3.036 28 H -0.291 1.291 29 H -0.294 1.294 30 H -0.276 1.276 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.203 0.797 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.029 0.971 49 H 0.006 0.994 50 H 0.366 0.634 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.834 -6.677 -20.362 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 O -0.220 6.220 4 C 0.159 3.841 5 N -0.283 5.283 6 C -0.007 4.007 7 C -0.222 4.222 8 C -0.043 4.043 9 C -0.224 4.224 10 C 0.310 3.690 11 O -0.361 6.361 12 N -0.341 5.341 13 C -0.027 4.027 14 C -0.168 4.168 15 C -0.143 4.143 16 C -0.114 4.114 17 H 0.104 0.896 18 C -0.193 4.193 19 C 0.050 3.950 20 H 0.080 0.920 21 C 0.038 3.962 22 N -0.343 5.343 23 C -0.339 4.339 24 H 0.076 0.924 25 C -0.276 4.276 26 N -0.626 5.626 27 Si 0.794 3.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H -0.202 1.202 31 H 0.129 0.871 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.219 0.781 37 H 0.204 0.796 38 H 0.180 0.820 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.121 0.879 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.024 0.976 50 H 0.197 0.803 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.416 -7.339 -19.941 23.241 hybrid contribution -0.349 0.362 1.537 1.617 sum 9.066 -6.977 -18.405 21.670 Atomic orbital electron populations 1.21808 0.92072 1.04093 1.02393 1.22770 0.95835 0.80215 1.02262 1.86410 1.17267 1.31820 1.86482 1.19972 0.84388 0.89362 0.90356 1.67459 1.08079 1.31806 1.20974 1.23375 0.88325 0.99616 0.89342 1.22362 1.03331 0.91597 1.04958 1.22047 0.89842 1.01930 0.90482 1.20250 0.95951 0.92094 1.14145 1.18285 0.86695 0.83311 0.80668 1.91171 1.25126 1.79736 1.40094 1.47749 1.30276 1.11691 1.44349 1.22277 0.87261 1.03230 0.89967 1.21953 1.01604 0.97441 0.95802 1.21516 0.95368 0.97474 0.99940 1.21457 0.97768 0.99385 0.92772 0.89611 1.21762 0.98420 0.98579 1.00576 1.21348 0.91453 0.85947 0.96223 0.91955 1.20975 0.94795 0.96135 0.84326 1.42269 1.04791 1.85328 1.01900 1.19401 0.89030 1.37325 0.88172 0.92436 1.25325 0.97804 1.05409 0.99035 1.69808 1.15442 1.60838 1.16537 0.85327 0.78600 0.77829 0.78815 1.21880 1.21982 1.20192 0.87143 0.93809 0.91953 0.90418 0.92381 0.78084 0.79650 0.81957 0.88911 0.89946 0.92350 0.87903 0.89707 0.90871 0.94876 0.90790 0.93766 0.95379 0.97623 0.80283 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 10.28 71.98 0.74 -3.25 16 2 C 0.06 1.98 6.03 71.98 0.43 2.41 16 3 O -0.31 -12.71 8.87 -71.72 -0.64 -13.35 16 4 C 0.34 12.46 7.48 85.13 0.64 13.09 16 5 N -0.56 -16.70 9.21 -307.99 -2.84 -19.53 16 6 C 0.15 3.09 11.17 84.71 0.95 4.04 16 7 C -0.20 -3.72 10.09 22.32 0.23 -3.49 16 8 C -0.02 -0.44 7.49 22.72 0.17 -0.27 16 9 C -0.22 -7.81 5.21 -19.91 -0.10 -7.92 16 10 C 0.52 22.00 6.61 86.69 0.57 22.57 16 11 O -0.49 -26.31 9.91 11.59 0.11 -26.20 16 12 N -0.60 -19.94 2.43 -798.70 -1.94 -21.88 16 13 C 0.09 2.03 4.86 86.36 0.42 2.45 16 14 C -0.13 -2.20 5.74 30.67 0.18 -2.02 16 15 C -0.11 -1.86 5.43 30.62 0.17 -1.70 16 16 C -0.09 -2.41 2.79 -10.72 -0.03 -2.44 16 17 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.14 -3.68 8.22 71.98 0.59 -3.09 16 19 C 0.15 5.37 2.62 44.97 0.12 5.49 16 20 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 21 C 0.16 7.66 4.03 86.38 0.35 8.01 16 22 N -0.70 -40.42 3.24 -343.45 -1.11 -41.54 16 23 C -0.21 -13.11 9.72 84.03 0.82 -12.29 16 24 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 25 C -0.09 -5.46 5.50 84.86 0.47 -4.99 16 26 N -0.97 -65.27 13.06 21.65 0.28 -64.98 16 27 Si 0.96 51.79 29.55 68.60 2.03 53.82 16 28 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 29 H -0.29 -15.60 7.11 99.48 0.71 -14.89 16 30 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 31 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.06 1.80 8.11 -2.38 -0.02 1.78 16 36 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.16 3.42 6.44 -2.91 -0.02 3.40 16 39 H 0.09 1.85 4.64 -2.38 -0.01 1.84 16 40 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 41 H 0.06 1.15 6.34 -2.39 -0.02 1.13 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.03 1.06 6.57 -2.39 -0.02 1.05 16 46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.04 1.30 5.98 -2.39 -0.01 1.28 16 48 H 0.03 1.47 5.06 -2.39 -0.01 1.46 16 49 H 0.01 0.28 8.12 -2.39 -0.02 0.27 16 50 H 0.37 22.38 7.12 -92.71 -0.66 21.72 16 51 H 0.24 15.88 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -88.54 390.97 2.88 -85.66 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.28 Total: 31.39 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 6.69 Total: 16.60 kcal Atomic # 7 Polarization: -142.33 SS G_CDS: -5.60 Total: -147.93 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.52 Total: -39.55 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.03 Total: 53.82 kcal Total: -88.54 2.88 -85.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715481110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.785 kcal (2) G-P(sol) polarization free energy of solvation -88.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds