Wall clock time and date at job start Wed Apr 1 2020 04:49:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.42898 * 109.47272 * 2 1
4 4 C 1.35424 * 117.00127 * 179.97438 * 3 2 1
5 5 N 1.32231 * 119.79932 * 359.97438 * 4 3 2
6 6 C 1.31889 * 121.80164 * 180.02562 * 5 4 3
7 7 C 1.50703 * 119.40893 * 179.97438 * 6 5 4
8 8 C 1.38361 * 121.18256 * 359.97438 * 6 5 4
9 9 C 1.38329 * 119.45586 * 0.04185 * 8 6 5
10 10 C 1.39986 * 118.35297 * 359.95926 * 9 8 6
11 11 C 1.47531 * 120.59652 * 180.29420 * 10 9 8
12 12 O 1.21579 * 120.00145 * 223.63721 * 11 10 9
13 13 N 1.34784 * 119.99609 * 43.63600 * 11 10 9
14 14 C 1.47023 * 125.65112 * 4.99195 * 13 11 10
15 15 C 1.54330 * 107.26280 * 178.84955 * 14 13 11
16 16 C 1.55153 * 103.02073 * 338.13343 * 15 14 13
17 17 H 1.08998 * 111.04258 * 277.21789 * 16 15 14
18 18 C 1.53005 * 111.00064 * 153.38268 * 16 15 14
19 19 C 1.53000 * 109.47042 * 181.35218 * 18 16 15
20 20 N 1.46505 * 109.47232 * 180.02562 * 19 18 16
21 21 C 1.36934 * 120.00154 * 179.97438 * 20 19 18
22 22 H 1.07996 * 119.99787 * 0.02562 * 21 20 19
23 23 C 1.38812 * 119.99829 * 179.97438 * 21 20 19
24 24 N 1.31613 * 119.99987 * 0.02562 * 23 21 20
25 25 Si 1.86806 * 119.99794 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47021 * 59.99831 * 25 23 21
27 27 H 1.48498 * 109.46890 * 180.02562 * 25 23 21
28 28 H 1.48504 * 109.47009 * 299.99851 * 25 23 21
29 29 C 1.47428 * 125.64512 * 185.29204 * 13 11 10
30 30 H 1.09001 * 109.46421 * 60.00389 * 1 2 3
31 31 H 1.09000 * 109.46841 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47427 * 300.00206 * 1 2 3
33 33 H 1.08996 * 109.47427 * 239.99794 * 2 1 3
34 34 H 1.09003 * 109.46823 * 119.99953 * 2 1 3
35 35 H 1.09002 * 109.46466 * 89.99978 * 7 6 5
36 36 H 1.08995 * 109.47102 * 209.99649 * 7 6 5
37 37 H 1.08999 * 109.47177 * 330.00440 * 7 6 5
38 38 H 1.07993 * 120.26945 * 180.02562 * 8 6 5
39 39 H 1.08005 * 120.82412 * 180.02562 * 9 8 6
40 40 H 1.08995 * 109.87711 * 298.39136 * 14 13 11
41 41 H 1.08999 * 109.88153 * 59.55292 * 14 13 11
42 42 H 1.09007 * 110.84794 * 219.67086 * 15 14 13
43 43 H 1.08995 * 110.67241 * 96.52178 * 15 14 13
44 44 H 1.08993 * 109.47685 * 301.35383 * 18 16 15
45 45 H 1.09009 * 109.47037 * 61.35685 * 18 16 15
46 46 H 1.09003 * 109.46953 * 300.00067 * 19 18 16
47 47 H 1.08997 * 109.47176 * 60.00083 * 19 18 16
48 48 H 0.97005 * 119.99674 * 359.97438 * 20 19 18
49 49 H 0.97007 * 119.99937 * 180.02562 * 24 23 21
50 50 H 1.08996 * 110.36892 * 322.93695 * 29 13 11
51 51 H 1.09007 * 110.36202 * 85.14725 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.3489 1.5247 0.0005
5 7 4.1507 0.4732 0.0015
6 6 5.4635 0.6002 0.0026
7 6 6.3265 -0.6352 0.0043
8 6 6.0626 1.8474 0.0022
9 6 5.2714 2.9821 0.0015
10 6 3.8806 2.8228 0.0004
11 6 2.9900 3.9990 -0.0069
12 8 2.0145 4.0274 0.7182
13 7 3.2579 5.0420 -0.8174
14 6 4.3373 5.0975 -1.8142
15 6 4.2397 6.4670 -2.5191
16 6 2.7671 6.8856 -2.2673
17 1 2.0991 6.4232 -2.9939
18 6 2.6197 8.4085 -2.2828
19 6 1.1637 8.7828 -1.9982
20 7 1.0223 10.2409 -2.0137
21 6 -0.2003 10.8128 -1.7831
22 1 -1.0603 10.1889 -1.5893
23 6 -0.3341 12.1944 -1.7972
24 7 0.7141 12.9546 -2.0328
25 14 -2.0019 12.9745 -1.4818
26 1 -2.4855 12.5810 -0.1341
27 1 -1.8780 14.4527 -1.5518
28 1 -2.9679 12.5100 -2.5096
29 6 2.5210 6.3186 -0.8470
30 1 -0.3632 0.5138 -0.8901
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 1.8934 -0.5138 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 6.5354 -0.9338 -1.0230
36 1 7.2637 -0.4231 0.5187
37 1 5.8045 -1.4424 0.5182
38 1 7.1390 1.9343 0.0026
39 1 5.7156 3.9665 0.0007
40 1 5.3037 5.0009 -1.3197
41 1 4.2100 4.2974 -2.5434
42 1 4.4355 6.3685 -3.5869
43 1 4.9267 7.1823 -2.0669
44 1 3.2628 8.8437 -1.5180
45 1 2.9086 8.7916 -3.2616
46 1 0.5205 8.3476 -2.7632
47 1 0.8747 8.3998 -1.0196
48 1 1.7949 10.8013 -2.1873
49 1 0.6207 13.9201 -2.0423
50 1 1.4568 6.1461 -0.6865
51 1 2.9124 7.0000 -0.0915
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717105290.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:49:14
Heat of formation + Delta-G solvation = -29.891893 kcal
Electronic energy + Delta-G solvation = -30184.058100 eV
Core-core repulsion = 26083.915110 eV
Total energy + Delta-G solvation = -4100.142990 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.32572 -39.82039 -38.50561 -37.68212 -35.13246 -33.77246 -32.84407 -32.52700
-31.26968 -30.96498 -29.53448 -28.54311 -26.95585 -24.65394 -24.22352 -23.32113
-22.96469 -22.34656 -21.24985 -20.27442 -19.88262 -18.57911 -17.56931 -17.25485
-16.99207 -16.64419 -15.94819 -15.70563 -15.24354 -14.87719 -14.68011 -14.59974
-14.37527 -14.05759 -13.69423 -13.52815 -13.40731 -13.33022 -13.15788 -12.91139
-12.88341 -12.73158 -12.61172 -12.54623 -12.26507 -12.19528 -11.79114 -11.66115
-11.32658 -11.04455 -11.01560 -10.79147 -10.64707 -10.48143 -10.36769 -10.32878
-10.25421 -9.97422 -9.79571 -9.63274 -8.83768 -8.82185 -8.65656 -6.87686
-5.72456 -3.00740 0.39610 0.86010 2.54391 2.68207 2.83535 3.35750
3.48029 3.51756 3.53281 3.68378 4.19915 4.23504 4.46787 4.51789
4.60237 4.67709 4.68379 4.72750 4.78869 4.82842 4.93573 5.04244
5.07198 5.08941 5.11426 5.26390 5.37398 5.41942 5.46942 5.49804
5.55986 5.57002 5.60897 5.61567 5.69355 5.81655 5.82174 5.85055
5.94650 5.99256 6.11160 6.18646 6.27798 6.40209 6.42278 6.88451
6.91762 6.92569 7.34545 7.45251 7.74487 8.07945 8.46911 9.57772
10.16163 10.50752 11.50521
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016364 B = 0.001996 C = 0.001828
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1710.633390 B =14021.734005 C =15310.513291
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.065 3.935
3 O -0.284 6.284
4 C 0.375 3.625
5 N -0.544 5.544
6 C 0.187 3.813
7 C -0.108 4.108
8 C -0.218 4.218
9 C -0.008 4.008
10 C -0.205 4.205
11 C 0.584 3.416
12 O -0.517 6.517
13 N -0.616 5.616
14 C 0.098 3.902
15 C -0.128 4.128
16 C -0.094 4.094
17 H 0.085 0.915
18 C -0.114 4.114
19 C 0.150 3.850
20 N -0.734 5.734
21 C -0.238 4.238
22 H 0.070 0.930
23 C -0.016 4.016
24 N -0.935 5.935
25 Si 0.908 3.092
26 H -0.286 1.286
27 H -0.291 1.291
28 H -0.286 1.286
29 C 0.111 3.889
30 H 0.066 0.934
31 H 0.079 0.921
32 H 0.068 0.932
33 H 0.066 0.934
34 H 0.067 0.933
35 H 0.084 0.916
36 H 0.081 0.919
37 H 0.079 0.921
38 H 0.144 0.856
39 H 0.149 0.851
40 H 0.067 0.933
41 H 0.066 0.934
42 H 0.083 0.917
43 H 0.080 0.920
44 H 0.066 0.934
45 H 0.068 0.932
46 H 0.018 0.982
47 H 0.020 0.980
48 H 0.383 0.617
49 H 0.255 0.745
50 H 0.083 0.917
51 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.571 -30.339 1.170 34.122
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.010 4.010
3 O -0.189 6.189
4 C 0.195 3.805
5 N -0.269 5.269
6 C 0.050 3.950
7 C -0.165 4.165
8 C -0.238 4.238
9 C -0.033 4.033
10 C -0.211 4.211
11 C 0.371 3.629
12 O -0.393 6.393
13 N -0.350 5.350
14 C -0.025 4.025
15 C -0.166 4.166
16 C -0.114 4.114
17 H 0.103 0.897
18 C -0.152 4.152
19 C 0.023 3.977
20 N -0.378 5.378
21 C -0.369 4.369
22 H 0.088 0.912
23 C -0.211 4.211
24 N -0.584 5.584
25 Si 0.739 3.261
26 H -0.212 1.212
27 H -0.217 1.217
28 H -0.213 1.213
29 C -0.011 4.011
30 H 0.085 0.915
31 H 0.097 0.903
32 H 0.087 0.913
33 H 0.084 0.916
34 H 0.085 0.915
35 H 0.102 0.898
36 H 0.099 0.901
37 H 0.098 0.902
38 H 0.161 0.839
39 H 0.166 0.834
40 H 0.085 0.915
41 H 0.084 0.916
42 H 0.101 0.899
43 H 0.099 0.901
44 H 0.084 0.916
45 H 0.087 0.913
46 H 0.036 0.964
47 H 0.038 0.962
48 H 0.217 0.783
49 H 0.065 0.935
50 H 0.101 0.899
51 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 14.201 -31.007 1.659 34.145
hybrid contribution -0.173 1.293 0.068 1.306
sum 14.028 -29.715 1.728 32.905
Atomic orbital electron populations
1.21819 0.92674 1.02770 1.03870 1.22686 0.95231 0.80749 1.02344
1.86399 1.15858 1.30663 1.85967 1.19641 0.84442 0.88203 0.88205
1.67263 1.06033 1.32399 1.21244 1.21168 0.88730 0.95382 0.89747
1.20817 0.98000 0.94129 1.03567 1.21725 1.01556 0.92143 1.08393
1.21703 0.90906 1.00105 0.90615 1.19847 0.94392 0.92248 1.14653
1.17385 0.84450 0.81110 0.79951 1.90833 1.27765 1.79840 1.40824
1.48411 1.33387 1.15588 1.37656 1.22189 0.90369 0.98967 0.90941
1.22731 0.97669 0.95165 1.01051 1.22338 0.95929 0.97022 0.96065
0.89672 1.21681 0.99032 0.92090 1.02411 1.20689 0.92630 0.86662
0.97734 1.42357 1.09352 0.99929 1.86176 1.19207 0.87539 0.89991
1.40200 0.91239 1.24742 0.97365 0.96147 1.02895 1.69650 1.28319
1.03913 1.56530 0.86256 0.83610 0.78186 0.78088 1.21249 1.21698
1.21289 1.22423 0.97974 0.83162 0.97497 0.91511 0.90258 0.91287
0.91601 0.91504 0.89774 0.90065 0.90190 0.83863 0.83359 0.91466
0.91582 0.89865 0.90111 0.91570 0.91288 0.96444 0.96212 0.78343
0.93528 0.89851 0.90821
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16
2 C 0.07 0.64 6.03 37.16 0.22 0.87 16
3 O -0.28 -3.88 9.02 -31.28 -0.28 -4.16 16
4 C 0.38 4.79 7.48 -16.61 -0.12 4.66 16
5 N -0.54 -5.86 9.11 -9.21 -0.08 -5.95 16
6 C 0.19 1.51 6.78 -82.52 -0.56 0.95 16
7 C -0.11 -0.48 10.16 36.01 0.37 -0.12 16
8 C -0.22 -1.51 9.71 -39.50 -0.38 -1.89 16
9 C -0.01 -0.07 8.57 -38.89 -0.33 -0.40 16
10 C -0.21 -2.52 5.43 -104.69 -0.57 -3.09 16
11 C 0.58 8.68 7.21 -12.47 -0.09 8.59 16
12 O -0.52 -9.79 16.56 -8.02 -0.13 -9.92 16
13 N -0.62 -7.86 3.33 -171.75 -0.57 -8.43 16
14 C 0.10 0.89 5.90 -3.06 -0.02 0.87 16
15 C -0.13 -1.18 6.42 -24.90 -0.16 -1.34 16
16 C -0.09 -1.16 3.08 -88.47 -0.27 -1.43 16
17 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
18 C -0.11 -1.74 4.84 -26.73 -0.13 -1.87 16
19 C 0.15 3.06 6.11 -4.04 -0.02 3.03 16
20 N -0.73 -19.04 5.60 -59.91 -0.34 -19.38 16
21 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16
22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
23 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16
24 N -0.94 -28.73 13.06 55.49 0.72 -28.01 16
25 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16
26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
28 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16
29 C 0.11 1.54 5.59 -2.53 -0.01 1.52 16
30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16
34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16
35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16
36 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16
37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
38 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16
39 H 0.15 0.97 6.10 -52.48 -0.32 0.65 16
40 H 0.07 0.47 5.70 -51.93 -0.30 0.17 16
41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
42 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16
43 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16
44 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16
45 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16
46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
47 H 0.02 0.42 7.46 -51.93 -0.39 0.03 16
48 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16
49 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16
50 H 0.08 1.32 7.91 -51.93 -0.41 0.91 16
51 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16
LS Contribution 415.50 15.07 6.26 6.26
Total: -1.00 -36.22 415.50 -9.83 -46.06
By element:
Atomic # 1 Polarization: 12.17 SS G_CDS: -8.44 Total: 3.73 kcal
Atomic # 6 Polarization: 3.83 SS G_CDS: -1.95 Total: 1.88 kcal
Atomic # 7 Polarization: -61.50 SS G_CDS: -0.27 Total: -61.76 kcal
Atomic # 8 Polarization: -13.67 SS G_CDS: -0.41 Total: -14.08 kcal
Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -36.22 -9.83 -46.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717105290.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.164 kcal
(2) G-P(sol) polarization free energy of solvation -36.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.059 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.892 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds