Wall clock time and date at job start Wed Apr 1 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47272 * 2 1 4 4 C 1.35424 * 117.00127 * 179.97438 * 3 2 1 5 5 N 1.32231 * 119.79932 * 359.97438 * 4 3 2 6 6 C 1.31889 * 121.80164 * 180.02562 * 5 4 3 7 7 C 1.50703 * 119.40893 * 179.97438 * 6 5 4 8 8 C 1.38361 * 121.18256 * 359.97438 * 6 5 4 9 9 C 1.38329 * 119.45586 * 0.04185 * 8 6 5 10 10 C 1.39986 * 118.35297 * 359.95926 * 9 8 6 11 11 C 1.47531 * 120.59652 * 180.29420 * 10 9 8 12 12 O 1.21579 * 120.00145 * 223.63721 * 11 10 9 13 13 N 1.34784 * 119.99609 * 43.63600 * 11 10 9 14 14 C 1.47023 * 125.65112 * 4.99195 * 13 11 10 15 15 C 1.54330 * 107.26280 * 178.84955 * 14 13 11 16 16 C 1.55153 * 103.02073 * 338.13343 * 15 14 13 17 17 H 1.08998 * 111.04258 * 277.21789 * 16 15 14 18 18 C 1.53005 * 111.00064 * 153.38268 * 16 15 14 19 19 C 1.53000 * 109.47042 * 181.35218 * 18 16 15 20 20 N 1.46505 * 109.47232 * 180.02562 * 19 18 16 21 21 C 1.36934 * 120.00154 * 179.97438 * 20 19 18 22 22 H 1.07996 * 119.99787 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99829 * 179.97438 * 21 20 19 24 24 N 1.31613 * 119.99987 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99794 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47021 * 59.99831 * 25 23 21 27 27 H 1.48498 * 109.46890 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47009 * 299.99851 * 25 23 21 29 29 C 1.47428 * 125.64512 * 185.29204 * 13 11 10 30 30 H 1.09001 * 109.46421 * 60.00389 * 1 2 3 31 31 H 1.09000 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47427 * 300.00206 * 1 2 3 33 33 H 1.08996 * 109.47427 * 239.99794 * 2 1 3 34 34 H 1.09003 * 109.46823 * 119.99953 * 2 1 3 35 35 H 1.09002 * 109.46466 * 89.99978 * 7 6 5 36 36 H 1.08995 * 109.47102 * 209.99649 * 7 6 5 37 37 H 1.08999 * 109.47177 * 330.00440 * 7 6 5 38 38 H 1.07993 * 120.26945 * 180.02562 * 8 6 5 39 39 H 1.08005 * 120.82412 * 180.02562 * 9 8 6 40 40 H 1.08995 * 109.87711 * 298.39136 * 14 13 11 41 41 H 1.08999 * 109.88153 * 59.55292 * 14 13 11 42 42 H 1.09007 * 110.84794 * 219.67086 * 15 14 13 43 43 H 1.08995 * 110.67241 * 96.52178 * 15 14 13 44 44 H 1.08993 * 109.47685 * 301.35383 * 18 16 15 45 45 H 1.09009 * 109.47037 * 61.35685 * 18 16 15 46 46 H 1.09003 * 109.46953 * 300.00067 * 19 18 16 47 47 H 1.08997 * 109.47176 * 60.00083 * 19 18 16 48 48 H 0.97005 * 119.99674 * 359.97438 * 20 19 18 49 49 H 0.97007 * 119.99937 * 180.02562 * 24 23 21 50 50 H 1.08996 * 110.36892 * 322.93695 * 29 13 11 51 51 H 1.09007 * 110.36202 * 85.14725 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1507 0.4732 0.0015 6 6 5.4635 0.6002 0.0026 7 6 6.3265 -0.6352 0.0043 8 6 6.0626 1.8474 0.0022 9 6 5.2714 2.9821 0.0015 10 6 3.8806 2.8228 0.0004 11 6 2.9900 3.9990 -0.0069 12 8 2.0145 4.0274 0.7182 13 7 3.2579 5.0420 -0.8174 14 6 4.3373 5.0975 -1.8142 15 6 4.2397 6.4670 -2.5191 16 6 2.7671 6.8856 -2.2673 17 1 2.0991 6.4232 -2.9939 18 6 2.6197 8.4085 -2.2828 19 6 1.1637 8.7828 -1.9982 20 7 1.0223 10.2409 -2.0137 21 6 -0.2003 10.8128 -1.7831 22 1 -1.0603 10.1889 -1.5893 23 6 -0.3341 12.1944 -1.7972 24 7 0.7141 12.9546 -2.0328 25 14 -2.0019 12.9745 -1.4818 26 1 -2.4855 12.5810 -0.1341 27 1 -1.8780 14.4527 -1.5518 28 1 -2.9679 12.5100 -2.5096 29 6 2.5210 6.3186 -0.8470 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 6.5354 -0.9338 -1.0230 36 1 7.2637 -0.4231 0.5187 37 1 5.8045 -1.4424 0.5182 38 1 7.1390 1.9343 0.0026 39 1 5.7156 3.9665 0.0007 40 1 5.3037 5.0009 -1.3197 41 1 4.2100 4.2974 -2.5434 42 1 4.4355 6.3685 -3.5869 43 1 4.9267 7.1823 -2.0669 44 1 3.2628 8.8437 -1.5180 45 1 2.9086 8.7916 -3.2616 46 1 0.5205 8.3476 -2.7632 47 1 0.8747 8.3998 -1.0196 48 1 1.7949 10.8013 -2.1873 49 1 0.6207 13.9201 -2.0423 50 1 1.4568 6.1461 -0.6865 51 1 2.9124 7.0000 -0.0915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717105290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:14 Heat of formation + Delta-G solvation = -29.891893 kcal Electronic energy + Delta-G solvation = -30184.058100 eV Core-core repulsion = 26083.915110 eV Total energy + Delta-G solvation = -4100.142990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32572 -39.82039 -38.50561 -37.68212 -35.13246 -33.77246 -32.84407 -32.52700 -31.26968 -30.96498 -29.53448 -28.54311 -26.95585 -24.65394 -24.22352 -23.32113 -22.96469 -22.34656 -21.24985 -20.27442 -19.88262 -18.57911 -17.56931 -17.25485 -16.99207 -16.64419 -15.94819 -15.70563 -15.24354 -14.87719 -14.68011 -14.59974 -14.37527 -14.05759 -13.69423 -13.52815 -13.40731 -13.33022 -13.15788 -12.91139 -12.88341 -12.73158 -12.61172 -12.54623 -12.26507 -12.19528 -11.79114 -11.66115 -11.32658 -11.04455 -11.01560 -10.79147 -10.64707 -10.48143 -10.36769 -10.32878 -10.25421 -9.97422 -9.79571 -9.63274 -8.83768 -8.82185 -8.65656 -6.87686 -5.72456 -3.00740 0.39610 0.86010 2.54391 2.68207 2.83535 3.35750 3.48029 3.51756 3.53281 3.68378 4.19915 4.23504 4.46787 4.51789 4.60237 4.67709 4.68379 4.72750 4.78869 4.82842 4.93573 5.04244 5.07198 5.08941 5.11426 5.26390 5.37398 5.41942 5.46942 5.49804 5.55986 5.57002 5.60897 5.61567 5.69355 5.81655 5.82174 5.85055 5.94650 5.99256 6.11160 6.18646 6.27798 6.40209 6.42278 6.88451 6.91762 6.92569 7.34545 7.45251 7.74487 8.07945 8.46911 9.57772 10.16163 10.50752 11.50521 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.001996 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.633390 B =14021.734005 C =15310.513291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.284 6.284 4 C 0.375 3.625 5 N -0.544 5.544 6 C 0.187 3.813 7 C -0.108 4.108 8 C -0.218 4.218 9 C -0.008 4.008 10 C -0.205 4.205 11 C 0.584 3.416 12 O -0.517 6.517 13 N -0.616 5.616 14 C 0.098 3.902 15 C -0.128 4.128 16 C -0.094 4.094 17 H 0.085 0.915 18 C -0.114 4.114 19 C 0.150 3.850 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.111 3.889 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.018 0.982 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.083 0.917 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.571 -30.339 1.170 34.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.189 6.189 4 C 0.195 3.805 5 N -0.269 5.269 6 C 0.050 3.950 7 C -0.165 4.165 8 C -0.238 4.238 9 C -0.033 4.033 10 C -0.211 4.211 11 C 0.371 3.629 12 O -0.393 6.393 13 N -0.350 5.350 14 C -0.025 4.025 15 C -0.166 4.166 16 C -0.114 4.114 17 H 0.103 0.897 18 C -0.152 4.152 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.011 4.011 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.101 0.899 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.201 -31.007 1.659 34.145 hybrid contribution -0.173 1.293 0.068 1.306 sum 14.028 -29.715 1.728 32.905 Atomic orbital electron populations 1.21819 0.92674 1.02770 1.03870 1.22686 0.95231 0.80749 1.02344 1.86399 1.15858 1.30663 1.85967 1.19641 0.84442 0.88203 0.88205 1.67263 1.06033 1.32399 1.21244 1.21168 0.88730 0.95382 0.89747 1.20817 0.98000 0.94129 1.03567 1.21725 1.01556 0.92143 1.08393 1.21703 0.90906 1.00105 0.90615 1.19847 0.94392 0.92248 1.14653 1.17385 0.84450 0.81110 0.79951 1.90833 1.27765 1.79840 1.40824 1.48411 1.33387 1.15588 1.37656 1.22189 0.90369 0.98967 0.90941 1.22731 0.97669 0.95165 1.01051 1.22338 0.95929 0.97022 0.96065 0.89672 1.21681 0.99032 0.92090 1.02411 1.20689 0.92630 0.86662 0.97734 1.42357 1.09352 0.99929 1.86176 1.19207 0.87539 0.89991 1.40200 0.91239 1.24742 0.97365 0.96147 1.02895 1.69650 1.28319 1.03913 1.56530 0.86256 0.83610 0.78186 0.78088 1.21249 1.21698 1.21289 1.22423 0.97974 0.83162 0.97497 0.91511 0.90258 0.91287 0.91601 0.91504 0.89774 0.90065 0.90190 0.83863 0.83359 0.91466 0.91582 0.89865 0.90111 0.91570 0.91288 0.96444 0.96212 0.78343 0.93528 0.89851 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 2 C 0.07 0.64 6.03 37.16 0.22 0.87 16 3 O -0.28 -3.88 9.02 -31.28 -0.28 -4.16 16 4 C 0.38 4.79 7.48 -16.61 -0.12 4.66 16 5 N -0.54 -5.86 9.11 -9.21 -0.08 -5.95 16 6 C 0.19 1.51 6.78 -82.52 -0.56 0.95 16 7 C -0.11 -0.48 10.16 36.01 0.37 -0.12 16 8 C -0.22 -1.51 9.71 -39.50 -0.38 -1.89 16 9 C -0.01 -0.07 8.57 -38.89 -0.33 -0.40 16 10 C -0.21 -2.52 5.43 -104.69 -0.57 -3.09 16 11 C 0.58 8.68 7.21 -12.47 -0.09 8.59 16 12 O -0.52 -9.79 16.56 -8.02 -0.13 -9.92 16 13 N -0.62 -7.86 3.33 -171.75 -0.57 -8.43 16 14 C 0.10 0.89 5.90 -3.06 -0.02 0.87 16 15 C -0.13 -1.18 6.42 -24.90 -0.16 -1.34 16 16 C -0.09 -1.16 3.08 -88.47 -0.27 -1.43 16 17 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 18 C -0.11 -1.74 4.84 -26.73 -0.13 -1.87 16 19 C 0.15 3.06 6.11 -4.04 -0.02 3.03 16 20 N -0.73 -19.04 5.60 -59.91 -0.34 -19.38 16 21 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 24 N -0.94 -28.73 13.06 55.49 0.72 -28.01 16 25 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 29 C 0.11 1.54 5.59 -2.53 -0.01 1.52 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.15 0.97 6.10 -52.48 -0.32 0.65 16 40 H 0.07 0.47 5.70 -51.93 -0.30 0.17 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 43 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 44 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 45 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.42 7.46 -51.93 -0.39 0.03 16 48 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 49 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.08 1.32 7.91 -51.93 -0.41 0.91 16 51 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 LS Contribution 415.50 15.07 6.26 6.26 Total: -1.00 -36.22 415.50 -9.83 -46.06 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.44 Total: 3.73 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.95 Total: 1.88 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.27 Total: -61.76 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.41 Total: -14.08 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.22 -9.83 -46.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717105290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.164 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds