Wall clock time and date at job start Wed Apr 1 2020 04:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47272 * 2 1 4 4 C 1.35424 * 117.00127 * 179.97438 * 3 2 1 5 5 N 1.32231 * 119.79932 * 359.97438 * 4 3 2 6 6 C 1.31889 * 121.80164 * 180.02562 * 5 4 3 7 7 C 1.50703 * 119.40893 * 179.97438 * 6 5 4 8 8 C 1.38361 * 121.18256 * 359.97438 * 6 5 4 9 9 C 1.38329 * 119.45586 * 0.04185 * 8 6 5 10 10 C 1.39986 * 118.35297 * 359.95926 * 9 8 6 11 11 C 1.47531 * 120.59652 * 180.29420 * 10 9 8 12 12 O 1.21579 * 120.00145 * 223.63721 * 11 10 9 13 13 N 1.34784 * 119.99609 * 43.63600 * 11 10 9 14 14 C 1.47023 * 125.65112 * 4.99195 * 13 11 10 15 15 C 1.54330 * 107.26280 * 178.84955 * 14 13 11 16 16 C 1.55153 * 103.02073 * 338.13343 * 15 14 13 17 17 H 1.08998 * 111.04258 * 277.21789 * 16 15 14 18 18 C 1.53005 * 111.00064 * 153.38268 * 16 15 14 19 19 C 1.53000 * 109.47042 * 181.35218 * 18 16 15 20 20 N 1.46505 * 109.47232 * 180.02562 * 19 18 16 21 21 C 1.36934 * 120.00154 * 179.97438 * 20 19 18 22 22 H 1.07996 * 119.99787 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99829 * 179.97438 * 21 20 19 24 24 N 1.31613 * 119.99987 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99794 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47021 * 59.99831 * 25 23 21 27 27 H 1.48498 * 109.46890 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47009 * 299.99851 * 25 23 21 29 29 C 1.47428 * 125.64512 * 185.29204 * 13 11 10 30 30 H 1.09001 * 109.46421 * 60.00389 * 1 2 3 31 31 H 1.09000 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47427 * 300.00206 * 1 2 3 33 33 H 1.08996 * 109.47427 * 239.99794 * 2 1 3 34 34 H 1.09003 * 109.46823 * 119.99953 * 2 1 3 35 35 H 1.09002 * 109.46466 * 89.99978 * 7 6 5 36 36 H 1.08995 * 109.47102 * 209.99649 * 7 6 5 37 37 H 1.08999 * 109.47177 * 330.00440 * 7 6 5 38 38 H 1.07993 * 120.26945 * 180.02562 * 8 6 5 39 39 H 1.08005 * 120.82412 * 180.02562 * 9 8 6 40 40 H 1.08995 * 109.87711 * 298.39136 * 14 13 11 41 41 H 1.08999 * 109.88153 * 59.55292 * 14 13 11 42 42 H 1.09007 * 110.84794 * 219.67086 * 15 14 13 43 43 H 1.08995 * 110.67241 * 96.52178 * 15 14 13 44 44 H 1.08993 * 109.47685 * 301.35383 * 18 16 15 45 45 H 1.09009 * 109.47037 * 61.35685 * 18 16 15 46 46 H 1.09003 * 109.46953 * 300.00067 * 19 18 16 47 47 H 1.08997 * 109.47176 * 60.00083 * 19 18 16 48 48 H 0.97005 * 119.99674 * 359.97438 * 20 19 18 49 49 H 0.97007 * 119.99937 * 180.02562 * 24 23 21 50 50 H 1.08996 * 110.36892 * 322.93695 * 29 13 11 51 51 H 1.09007 * 110.36202 * 85.14725 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5247 0.0005 5 7 4.1507 0.4732 0.0015 6 6 5.4635 0.6002 0.0026 7 6 6.3265 -0.6352 0.0043 8 6 6.0626 1.8474 0.0022 9 6 5.2714 2.9821 0.0015 10 6 3.8806 2.8228 0.0004 11 6 2.9900 3.9990 -0.0069 12 8 2.0145 4.0274 0.7182 13 7 3.2579 5.0420 -0.8174 14 6 4.3373 5.0975 -1.8142 15 6 4.2397 6.4670 -2.5191 16 6 2.7671 6.8856 -2.2673 17 1 2.0991 6.4232 -2.9939 18 6 2.6197 8.4085 -2.2828 19 6 1.1637 8.7828 -1.9982 20 7 1.0223 10.2409 -2.0137 21 6 -0.2003 10.8128 -1.7831 22 1 -1.0603 10.1889 -1.5893 23 6 -0.3341 12.1944 -1.7972 24 7 0.7141 12.9546 -2.0328 25 14 -2.0019 12.9745 -1.4818 26 1 -2.4855 12.5810 -0.1341 27 1 -1.8780 14.4527 -1.5518 28 1 -2.9679 12.5100 -2.5096 29 6 2.5210 6.3186 -0.8470 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 6.5354 -0.9338 -1.0230 36 1 7.2637 -0.4231 0.5187 37 1 5.8045 -1.4424 0.5182 38 1 7.1390 1.9343 0.0026 39 1 5.7156 3.9665 0.0007 40 1 5.3037 5.0009 -1.3197 41 1 4.2100 4.2974 -2.5434 42 1 4.4355 6.3685 -3.5869 43 1 4.9267 7.1823 -2.0669 44 1 3.2628 8.8437 -1.5180 45 1 2.9086 8.7916 -3.2616 46 1 0.5205 8.3476 -2.7632 47 1 0.8747 8.3998 -1.0196 48 1 1.7949 10.8013 -2.1873 49 1 0.6207 13.9201 -2.0423 50 1 1.4568 6.1461 -0.6865 51 1 2.9124 7.0000 -0.0915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717105290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:13 Heat of formation + Delta-G solvation = -54.697122 kcal Electronic energy + Delta-G solvation = -30185.133735 eV Core-core repulsion = 26083.915110 eV Total energy + Delta-G solvation = -4101.218625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.12537 -40.79606 -39.27784 -38.82446 -36.85896 -34.85577 -34.05209 -33.32603 -32.57059 -31.93239 -30.73413 -29.34044 -28.22868 -26.07247 -24.93927 -24.74758 -23.78737 -23.20722 -22.61162 -21.32862 -20.90222 -19.36255 -19.16346 -18.50221 -18.00873 -17.46615 -16.97433 -16.68767 -16.65710 -16.09643 -15.66340 -15.38444 -15.33082 -15.23793 -15.11409 -14.97548 -14.51093 -14.35310 -14.02962 -13.89848 -13.81162 -13.50097 -13.39212 -13.30507 -13.06550 -12.98849 -12.95881 -12.87624 -12.80148 -12.53428 -12.29568 -12.23216 -12.01506 -11.74963 -11.71159 -11.55826 -11.45069 -11.31514 -10.97501 -10.93427 -10.67741 -9.76895 -9.48643 -9.01748 -7.97236 -5.26051 -0.33230 0.18443 1.45294 1.48637 1.54859 1.55796 1.85767 1.93043 2.54444 2.61434 3.03132 3.34489 3.36002 3.60284 3.60786 3.74590 3.79950 3.84770 3.98506 4.06899 4.13449 4.15788 4.27297 4.29559 4.32976 4.36215 4.49058 4.53725 4.58877 4.69827 4.75067 4.75924 4.81679 4.82940 4.84117 4.89666 4.91972 4.94646 4.98207 5.12125 5.13184 5.16270 5.17245 5.29571 5.37603 5.45646 5.47646 5.47894 6.15326 6.25835 6.39570 6.71075 7.00875 7.31844 8.07847 8.32231 9.25869 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.001996 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.633390 B =14021.734005 C =15310.513291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.317 6.317 4 C 0.351 3.649 5 N -0.557 5.557 6 C 0.180 3.820 7 C -0.105 4.105 8 C -0.202 4.202 9 C -0.002 4.002 10 C -0.232 4.232 11 C 0.578 3.422 12 O -0.577 6.577 13 N -0.613 5.613 14 C 0.095 3.905 15 C -0.116 4.116 16 C -0.085 4.085 17 H 0.084 0.916 18 C -0.098 4.098 19 C 0.147 3.853 20 N -0.746 5.746 21 C -0.251 4.251 22 H 0.070 0.930 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.974 3.026 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.278 1.278 29 C 0.109 3.891 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.187 0.813 39 H 0.172 0.828 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.376 0.624 49 H 0.253 0.747 50 H 0.051 0.949 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.514 -31.856 0.317 36.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.223 6.223 4 C 0.172 3.828 5 N -0.283 5.283 6 C 0.043 3.957 7 C -0.162 4.162 8 C -0.221 4.221 9 C -0.027 4.027 10 C -0.238 4.238 11 C 0.368 3.632 12 O -0.457 6.457 13 N -0.346 5.346 14 C -0.026 4.026 15 C -0.154 4.154 16 C -0.105 4.105 17 H 0.102 0.898 18 C -0.136 4.136 19 C 0.021 3.979 20 N -0.389 5.389 21 C -0.383 4.383 22 H 0.088 0.912 23 C -0.267 4.267 24 N -0.617 5.617 25 Si 0.802 3.198 26 H -0.207 1.207 27 H -0.216 1.216 28 H -0.204 1.204 29 C -0.013 4.013 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.204 0.796 39 H 0.189 0.811 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.033 0.967 47 H 0.029 0.971 48 H 0.208 0.792 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.177 -32.562 0.776 36.823 hybrid contribution -1.011 1.653 0.340 1.967 sum 16.166 -30.909 1.115 34.899 Atomic orbital electron populations 1.21843 0.91858 1.04286 1.02715 1.22830 0.95895 0.79764 1.02664 1.86366 1.17110 1.32417 1.86438 1.19870 0.84380 0.89022 0.89561 1.67326 1.07343 1.31760 1.21827 1.21966 0.88122 0.97552 0.88109 1.20951 0.98220 0.92264 1.04777 1.22186 1.03397 0.90774 1.05757 1.21996 0.89230 1.01951 0.89559 1.19804 0.95617 0.90819 1.17541 1.17918 0.84132 0.81972 0.79223 1.90783 1.30424 1.81084 1.43362 1.48483 1.33899 1.14520 1.37715 1.22473 0.90409 0.99252 0.90486 1.22743 0.94744 0.95152 1.02768 1.22194 0.98876 0.94597 0.94850 0.89805 1.21512 0.95238 0.94166 1.02682 1.20863 0.96276 0.83707 0.97073 1.42564 1.08262 1.02045 1.86047 1.19584 0.88688 0.90537 1.39522 0.91228 1.25574 1.01047 0.96692 1.03372 1.69795 1.30245 1.03855 1.57802 0.85213 0.79438 0.76979 0.78143 1.20651 1.21633 1.20371 1.22310 0.96412 0.84049 0.98537 0.92333 0.87345 0.92680 0.90886 0.91384 0.88292 0.87321 0.90742 0.79614 0.81090 0.88328 0.90568 0.87455 0.88905 0.91421 0.90546 0.96714 0.97056 0.79194 0.93848 0.93080 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.06 1.32 6.03 71.98 0.43 1.75 16 3 O -0.32 -9.31 9.02 -74.46 -0.67 -9.98 16 4 C 0.35 9.19 7.48 85.13 0.64 9.82 16 5 N -0.56 -11.61 9.11 -296.06 -2.70 -14.31 16 6 C 0.18 2.40 6.78 42.58 0.29 2.69 16 7 C -0.11 -0.56 10.16 71.24 0.72 0.16 16 8 C -0.20 -1.98 9.71 22.32 0.22 -1.77 16 9 C 0.00 -0.03 8.57 22.72 0.19 0.16 16 10 C -0.23 -5.66 5.43 -19.91 -0.11 -5.77 16 11 C 0.58 17.93 7.21 86.69 0.63 18.56 16 12 O -0.58 -23.69 16.56 8.77 0.15 -23.54 16 13 N -0.61 -15.61 3.33 -815.54 -2.71 -18.33 16 14 C 0.10 1.47 5.90 86.73 0.51 1.98 16 15 C -0.12 -1.77 6.42 31.78 0.20 -1.56 16 16 C -0.09 -2.04 3.08 -9.40 -0.03 -2.06 16 17 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.10 -2.94 4.84 30.60 0.15 -2.79 16 19 C 0.15 6.11 6.11 86.38 0.53 6.64 16 20 N -0.75 -39.42 5.60 -343.45 -1.92 -41.34 16 21 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 24 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 25 Si 0.97 47.53 29.55 68.60 2.03 49.56 16 26 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 29 C 0.11 3.13 5.59 86.85 0.49 3.62 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.11 0.02 8.07 -2.39 -0.02 0.00 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 39 H 0.17 1.56 6.10 -2.91 -0.02 1.55 16 40 H 0.10 0.94 5.70 -2.39 -0.01 0.93 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.09 1.25 8.04 -2.39 -0.02 1.23 16 44 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 45 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.01 0.50 7.46 -2.39 -0.02 0.48 16 48 H 0.38 20.59 7.67 -92.70 -0.71 19.88 16 49 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 50 H 0.05 1.76 7.91 -2.39 -0.02 1.75 16 51 H 0.07 2.00 8.01 -2.38 -0.02 1.98 16 Total: -1.00 -83.64 415.50 1.57 -82.07 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.21 Total: 23.93 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.91 Total: 11.71 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -7.05 Total: -133.73 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.53 Total: -33.53 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -83.64 1.57 -82.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717105290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.369 kcal (2) G-P(sol) polarization free energy of solvation -83.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds