Wall clock time and date at job start Wed Apr 1 2020 04:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.35682 * 116.99724 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.68529 * 179.97438 * 4 3 2 6 6 C 1.38379 * 119.11224 * 179.97438 * 5 4 3 7 7 C 1.38825 * 118.48256 * 359.97438 * 6 5 4 8 8 C 1.38044 * 119.29350 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.58399 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47465 * 125.00221 * 9 8 7 11 11 O 1.21281 * 119.99761 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99989 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99936 * 179.97438 * 12 10 9 14 14 H 1.09007 * 110.67251 * 34.29453 * 13 12 10 15 15 C 1.54886 * 110.75543 * 271.06157 * 13 12 10 16 16 C 1.54473 * 104.10124 * 203.89516 * 15 13 12 17 17 C 1.53874 * 106.68559 * 23.33935 * 16 15 13 18 18 H 1.08996 * 110.07051 * 240.85571 * 17 16 15 19 19 C 1.52998 * 110.03260 * 119.44481 * 17 16 15 20 20 N 1.46496 * 109.46955 * 67.83619 * 19 17 16 21 21 C 1.36941 * 119.99803 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00303 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99960 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99792 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47104 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46957 * 120.00196 * 25 23 21 28 28 H 1.48501 * 109.46845 * 239.99796 * 25 23 21 29 29 C 1.54273 * 106.59723 * 0.16154 * 17 16 15 30 30 N 1.31961 * 120.83110 * 359.74340 * 8 7 6 31 31 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 34 34 H 1.09001 * 109.46998 * 119.99473 * 2 1 3 35 35 H 1.09000 * 109.47050 * 239.99764 * 2 1 3 36 36 H 1.08001 * 120.44011 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.75356 * 179.97438 * 6 5 4 38 38 H 1.08007 * 120.35107 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.46750 * 245.00285 * 9 8 7 40 40 H 1.09000 * 109.47447 * 4.99817 * 9 8 7 41 41 H 0.97000 * 120.00179 * 359.97438 * 12 10 9 42 42 H 1.09006 * 110.48943 * 322.41714 * 15 13 12 43 43 H 1.08995 * 110.48942 * 85.06730 * 15 13 12 44 44 H 1.08999 * 109.85448 * 264.10318 * 16 15 13 45 45 H 1.09002 * 110.16415 * 142.74831 * 16 15 13 46 46 H 1.08998 * 109.47127 * 187.83310 * 19 17 16 47 47 H 1.09002 * 109.47198 * 307.83086 * 19 17 16 48 48 H 0.96999 * 120.00247 * 359.97438 * 20 19 17 49 49 H 0.97006 * 120.00162 * 180.02562 * 24 23 21 50 50 H 1.09008 * 110.48325 * 217.71409 * 29 17 16 51 51 H 1.08998 * 110.48366 * 95.07072 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8754 2.8116 0.0000 6 6 5.2491 2.9791 0.0011 7 6 6.0540 1.8481 0.0033 8 6 5.4647 0.5997 0.0037 9 6 6.3322 -0.6325 0.0066 10 6 5.9530 -1.5111 1.1707 11 8 5.0660 -1.1700 1.9242 12 7 6.6003 -2.6754 1.3751 13 6 6.2321 -3.5293 2.5071 14 1 5.1615 -3.4682 2.7030 15 6 7.0438 -3.1472 3.7697 16 6 7.0329 -4.4320 4.6273 17 6 6.7868 -5.6051 3.6624 18 1 5.8653 -6.1222 3.9297 19 6 7.9662 -6.5785 3.7093 20 7 8.0027 -7.2387 5.0166 21 6 8.9794 -8.1582 5.2922 22 1 9.7223 -8.3971 4.5458 23 6 9.0143 -8.7834 6.5311 24 7 8.1091 -8.4919 7.4411 25 14 10.3461 -10.0382 6.9068 26 1 11.2341 -10.1861 5.7259 27 1 11.1438 -9.5795 8.0723 28 1 9.7186 -11.3470 7.2207 29 6 6.6604 -4.9956 2.2508 30 7 4.1513 0.4718 0.0071 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 3.2194 3.6696 -0.0004 37 1 5.6849 3.9673 0.0004 38 1 7.1298 1.9438 0.0037 39 1 6.1878 -1.1806 -0.9245 40 1 7.3783 -0.3402 0.0976 41 1 7.3100 -2.9481 0.7727 42 1 8.0653 -2.8791 3.4999 43 1 6.5605 -2.3267 4.3001 44 1 6.2304 -4.3791 5.3631 45 1 7.9922 -4.5566 5.1296 46 1 7.8498 -7.3283 2.9269 47 1 8.8956 -6.0311 3.5526 48 1 7.3357 -7.0239 5.6873 49 1 8.1337 -8.9285 8.3070 50 1 5.8979 -5.5207 1.6754 51 1 7.6196 -5.0281 1.7341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725660899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:04 Heat of formation + Delta-G solvation = -43.562907 kcal Electronic energy + Delta-G solvation = -29594.932026 eV Core-core repulsion = 25494.196216 eV Total energy + Delta-G solvation = -4100.735809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.03366 -39.87010 -38.44871 -37.82594 -34.80318 -33.51546 -33.28240 -32.48539 -31.42881 -30.93720 -28.73749 -28.72759 -27.18717 -24.48284 -24.16047 -23.07276 -22.43652 -22.19474 -20.78714 -20.58801 -19.11126 -18.54447 -17.40636 -17.06941 -16.85128 -16.45142 -16.30760 -16.05281 -15.59353 -15.23945 -14.61204 -14.48123 -14.31054 -14.21553 -13.76303 -13.43146 -13.34870 -13.29808 -13.13001 -12.84180 -12.77849 -12.73291 -12.37150 -12.24458 -11.94682 -11.80666 -11.75733 -11.39350 -11.08362 -10.96281 -10.87134 -10.75705 -10.49054 -10.35044 -10.14645 -10.08722 -9.96711 -9.85732 -9.76024 -9.65014 -9.03070 -8.85346 -8.70485 -6.89070 -5.74649 -3.02953 0.81284 1.03472 2.57320 2.78416 3.01131 3.43942 3.49259 3.51756 3.54866 3.76986 4.34203 4.59354 4.59954 4.68027 4.74510 4.76918 4.79158 4.82571 4.88930 4.93082 5.02321 5.03535 5.07623 5.15895 5.36274 5.45887 5.54412 5.57961 5.58708 5.61788 5.63972 5.67234 5.72349 5.77514 5.86725 5.87274 5.95067 6.13072 6.16064 6.20624 6.31003 6.36079 6.48306 6.60339 6.70274 6.85269 6.96699 7.02456 7.42611 7.65074 7.71788 8.17589 8.44513 9.55567 10.14932 10.49470 11.48333 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.001675 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.738632 B =16712.822131 C =17450.013404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.309 6.309 4 C 0.328 3.672 5 C -0.196 4.196 6 C -0.041 4.041 7 C -0.207 4.207 8 C 0.185 3.815 9 C -0.095 4.095 10 C 0.518 3.482 11 O -0.522 6.522 12 N -0.724 5.724 13 C 0.140 3.860 14 H 0.093 0.907 15 C -0.131 4.131 16 C -0.115 4.115 17 C -0.095 4.095 18 H 0.074 0.926 19 C 0.161 3.839 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.120 4.120 30 N -0.512 5.512 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.399 0.601 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.016 0.984 47 H 0.019 0.981 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.068 0.932 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.098 23.719 -20.881 32.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.148 3.852 5 C -0.216 4.216 6 C -0.067 4.067 7 C -0.227 4.227 8 C 0.047 3.953 9 C -0.136 4.136 10 C 0.303 3.697 11 O -0.397 6.397 12 N -0.376 5.376 13 C 0.036 3.964 14 H 0.111 0.889 15 C -0.170 4.170 16 C -0.153 4.153 17 C -0.115 4.115 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.377 5.377 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.582 5.582 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.158 4.158 30 N -0.235 5.235 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.233 0.767 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.034 0.966 47 H 0.036 0.964 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.229 23.208 -20.342 32.212 hybrid contribution 1.308 -0.243 0.267 1.356 sum -7.922 22.965 -20.075 31.515 Atomic orbital electron populations 1.21821 0.93087 1.02969 1.03099 1.22613 0.94562 0.80812 1.02871 1.86208 1.16826 1.30982 1.87654 1.19738 0.84081 0.89704 0.91648 1.21066 0.95956 0.95780 1.08824 1.21338 0.92295 0.99325 0.93706 1.21749 1.01341 0.92508 1.07117 1.20142 0.88699 0.93418 0.93012 1.20665 0.99778 0.93611 0.99504 1.20185 0.82033 0.81560 0.85957 1.90744 1.30017 1.72111 1.46793 1.46024 1.39216 1.21332 1.30979 1.22043 1.00059 0.89087 0.85218 0.88902 1.22757 0.99848 0.98389 0.95972 1.22160 1.03127 0.92518 0.97499 1.21866 1.00209 0.96268 0.93135 0.90774 1.20734 0.93962 0.92573 0.89396 1.42383 1.35004 1.48360 1.11909 1.19281 1.05396 1.14434 0.97827 0.91205 1.24747 0.99058 1.00742 0.96605 1.69674 1.36291 1.46264 1.05957 0.86122 0.81162 0.81168 0.77779 1.20603 1.21906 1.21907 1.22599 1.01527 0.93609 0.98086 1.67031 1.05771 1.33145 1.17567 0.91841 0.90241 0.91658 0.91053 0.91837 0.84264 0.84080 0.84513 0.86933 0.87003 0.76705 0.91655 0.91771 0.92018 0.90353 0.96590 0.96370 0.78216 0.93595 0.91296 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.73 16 2 C 0.07 0.67 6.03 37.16 0.22 0.90 16 3 O -0.31 -3.57 10.12 -18.75 -0.19 -3.76 16 4 C 0.33 3.84 7.49 -17.12 -0.13 3.71 16 5 C -0.20 -1.78 10.04 -39.28 -0.39 -2.18 16 6 C -0.04 -0.30 10.17 -39.31 -0.40 -0.70 16 7 C -0.21 -1.62 9.70 -39.44 -0.38 -2.00 16 8 C 0.18 1.85 5.77 -82.61 -0.48 1.37 16 9 C -0.10 -0.71 6.10 -29.04 -0.18 -0.89 16 10 C 0.52 5.80 7.76 -10.99 -0.09 5.72 16 11 O -0.52 -8.26 15.01 5.56 0.08 -8.18 16 12 N -0.72 -7.00 5.19 -51.88 -0.27 -7.27 16 13 C 0.14 1.70 3.21 -65.94 -0.21 1.49 16 14 H 0.09 1.30 7.62 -51.93 -0.40 0.91 16 15 C -0.13 -1.75 6.53 -24.96 -0.16 -1.91 16 16 C -0.11 -1.81 6.19 -25.50 -0.16 -1.97 16 17 C -0.10 -1.52 2.96 -89.50 -0.27 -1.78 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.16 3.19 5.27 -4.04 -0.02 3.17 16 20 N -0.73 -18.58 5.39 -59.91 -0.32 -18.90 16 21 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 C -0.12 -1.45 5.98 -25.07 -0.15 -1.60 16 30 N -0.51 -6.30 8.06 -9.55 -0.08 -6.37 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.68 7.94 -52.48 -0.42 0.26 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.49 7.86 -51.93 -0.41 0.08 16 41 H 0.40 2.65 8.55 -40.82 -0.35 2.30 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.41 7.61 -51.93 -0.40 1.02 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.28 7.55 -40.82 -0.31 9.97 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 51 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 LS Contribution 419.57 15.07 6.32 6.32 Total: -1.00 -35.65 419.57 -9.96 -45.62 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.56 Total: 7.62 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.65 Total: -4.83 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.06 Total: -60.30 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.11 Total: -11.94 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.65 -9.96 -45.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725660899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.054 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds