Wall clock time and date at job start Wed Apr 1 2020 04:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.35682 * 116.99724 * 179.97438 * 3 2 1 5 5 C 1.38922 * 119.68529 * 179.97438 * 4 3 2 6 6 C 1.38379 * 119.11224 * 179.97438 * 5 4 3 7 7 C 1.38825 * 118.48256 * 359.97438 * 6 5 4 8 8 C 1.38044 * 119.29350 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.58399 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47465 * 125.00221 * 9 8 7 11 11 O 1.21281 * 119.99761 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99989 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99936 * 179.97438 * 12 10 9 14 14 H 1.09007 * 110.67251 * 34.29453 * 13 12 10 15 15 C 1.54886 * 110.75543 * 271.06157 * 13 12 10 16 16 C 1.54473 * 104.10124 * 203.89516 * 15 13 12 17 17 C 1.53874 * 106.68559 * 23.33935 * 16 15 13 18 18 H 1.08996 * 110.07051 * 240.85571 * 17 16 15 19 19 C 1.52998 * 110.03260 * 119.44481 * 17 16 15 20 20 N 1.46496 * 109.46955 * 67.83619 * 19 17 16 21 21 C 1.36941 * 119.99803 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00303 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99960 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99792 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47104 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46957 * 120.00196 * 25 23 21 28 28 H 1.48501 * 109.46845 * 239.99796 * 25 23 21 29 29 C 1.54273 * 106.59723 * 0.16154 * 17 16 15 30 30 N 1.31961 * 120.83110 * 359.74340 * 8 7 6 31 31 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 34 34 H 1.09001 * 109.46998 * 119.99473 * 2 1 3 35 35 H 1.09000 * 109.47050 * 239.99764 * 2 1 3 36 36 H 1.08001 * 120.44011 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.75356 * 179.97438 * 6 5 4 38 38 H 1.08007 * 120.35107 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.46750 * 245.00285 * 9 8 7 40 40 H 1.09000 * 109.47447 * 4.99817 * 9 8 7 41 41 H 0.97000 * 120.00179 * 359.97438 * 12 10 9 42 42 H 1.09006 * 110.48943 * 322.41714 * 15 13 12 43 43 H 1.08995 * 110.48942 * 85.06730 * 15 13 12 44 44 H 1.08999 * 109.85448 * 264.10318 * 16 15 13 45 45 H 1.09002 * 110.16415 * 142.74831 * 16 15 13 46 46 H 1.08998 * 109.47127 * 187.83310 * 19 17 16 47 47 H 1.09002 * 109.47198 * 307.83086 * 19 17 16 48 48 H 0.96999 * 120.00247 * 359.97438 * 20 19 17 49 49 H 0.97006 * 120.00162 * 180.02562 * 24 23 21 50 50 H 1.09008 * 110.48325 * 217.71409 * 29 17 16 51 51 H 1.08998 * 110.48366 * 95.07072 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5250 0.0005 5 6 3.8754 2.8116 0.0000 6 6 5.2491 2.9791 0.0011 7 6 6.0540 1.8481 0.0033 8 6 5.4647 0.5997 0.0037 9 6 6.3322 -0.6325 0.0066 10 6 5.9530 -1.5111 1.1707 11 8 5.0660 -1.1700 1.9242 12 7 6.6003 -2.6754 1.3751 13 6 6.2321 -3.5293 2.5071 14 1 5.1615 -3.4682 2.7030 15 6 7.0438 -3.1472 3.7697 16 6 7.0329 -4.4320 4.6273 17 6 6.7868 -5.6051 3.6624 18 1 5.8653 -6.1222 3.9297 19 6 7.9662 -6.5785 3.7093 20 7 8.0027 -7.2387 5.0166 21 6 8.9794 -8.1582 5.2922 22 1 9.7223 -8.3971 4.5458 23 6 9.0143 -8.7834 6.5311 24 7 8.1091 -8.4919 7.4411 25 14 10.3461 -10.0382 6.9068 26 1 11.2341 -10.1861 5.7259 27 1 11.1438 -9.5795 8.0723 28 1 9.7186 -11.3470 7.2207 29 6 6.6604 -4.9956 2.2508 30 7 4.1513 0.4718 0.0071 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 3.2194 3.6696 -0.0004 37 1 5.6849 3.9673 0.0004 38 1 7.1298 1.9438 0.0037 39 1 6.1878 -1.1806 -0.9245 40 1 7.3783 -0.3402 0.0976 41 1 7.3100 -2.9481 0.7727 42 1 8.0653 -2.8791 3.4999 43 1 6.5605 -2.3267 4.3001 44 1 6.2304 -4.3791 5.3631 45 1 7.9922 -4.5566 5.1296 46 1 7.8498 -7.3283 2.9269 47 1 8.8956 -6.0311 3.5526 48 1 7.3357 -7.0239 5.6873 49 1 8.1337 -8.9285 8.3070 50 1 5.8979 -5.5207 1.6754 51 1 7.6196 -5.0281 1.7341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725660899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:03 Heat of formation + Delta-G solvation = -68.699890 kcal Electronic energy + Delta-G solvation = -29596.022047 eV Core-core repulsion = 25494.196216 eV Total energy + Delta-G solvation = -4101.825831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73571 -40.79970 -39.39491 -38.80641 -36.42108 -34.77362 -34.06535 -33.16168 -32.91093 -31.98220 -30.13049 -29.61420 -28.26924 -26.13958 -24.93497 -23.97432 -23.79358 -23.15672 -21.70868 -21.56836 -20.44639 -19.28755 -19.09150 -18.18638 -17.67330 -17.28036 -17.06421 -16.86583 -16.77622 -16.49801 -16.06190 -15.52100 -15.17468 -15.05390 -15.00032 -14.95960 -14.53669 -14.34268 -14.18062 -13.95090 -13.48814 -13.43458 -13.32567 -13.26771 -12.96184 -12.91983 -12.83231 -12.75055 -12.47620 -12.41285 -12.11652 -12.08804 -11.84271 -11.72095 -11.71495 -11.51186 -11.28862 -10.92161 -10.90173 -10.76828 -10.47941 -9.97668 -9.39093 -8.97745 -7.94361 -5.22872 0.15662 0.40638 1.47387 1.48405 1.58542 1.74600 2.09036 2.20479 2.56868 2.86339 3.13606 3.39355 3.58923 3.65953 3.80251 3.85253 4.01457 4.02601 4.06712 4.16679 4.21032 4.22188 4.36846 4.38078 4.41380 4.48157 4.51731 4.52966 4.57010 4.61753 4.69767 4.79654 4.81252 4.83620 4.90062 4.92441 5.01350 5.04059 5.15135 5.16937 5.19661 5.26583 5.27328 5.40940 5.49908 5.53662 5.57222 5.64160 6.28247 6.28340 6.67350 6.96911 7.34098 7.39043 8.12164 8.34231 9.29644 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.001675 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.738632 B =16712.822131 C =17450.013404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 O -0.323 6.323 4 C 0.292 3.708 5 C -0.204 4.204 6 C -0.039 4.039 7 C -0.201 4.201 8 C 0.157 3.843 9 C -0.087 4.087 10 C 0.514 3.486 11 O -0.575 6.575 12 N -0.709 5.709 13 C 0.150 3.850 14 H 0.071 0.929 15 C -0.120 4.120 16 C -0.112 4.112 17 C -0.090 4.090 18 H 0.061 0.939 19 C 0.160 3.840 20 N -0.747 5.747 21 C -0.242 4.242 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.975 3.025 26 H -0.264 1.264 27 H -0.294 1.294 28 H -0.294 1.294 29 C -0.104 4.104 30 N -0.542 5.542 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.153 0.847 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.418 0.582 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.022 0.978 47 H 0.025 0.975 48 H 0.373 0.627 49 H 0.250 0.750 50 H 0.081 0.919 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 24.770 -23.392 34.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.005 4.005 3 O -0.231 6.231 4 C 0.113 3.887 5 C -0.224 4.224 6 C -0.064 4.064 7 C -0.221 4.221 8 C 0.019 3.981 9 C -0.126 4.126 10 C 0.301 3.699 11 O -0.453 6.453 12 N -0.362 5.362 13 C 0.044 3.956 14 H 0.089 0.911 15 C -0.159 4.159 16 C -0.150 4.150 17 C -0.109 4.109 18 H 0.079 0.921 19 C 0.034 3.966 20 N -0.389 5.389 21 C -0.374 4.374 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.188 1.188 27 H -0.221 1.221 28 H -0.222 1.222 29 C -0.143 4.143 30 N -0.266 5.266 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.171 0.829 37 H 0.195 0.805 38 H 0.190 0.810 39 H 0.152 0.848 40 H 0.170 0.830 41 H 0.256 0.744 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.040 0.960 47 H 0.043 0.957 48 H 0.204 0.796 49 H 0.059 0.941 50 H 0.100 0.900 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.083 24.261 -22.933 34.128 hybrid contribution 0.685 -0.513 1.022 1.333 sum -6.398 23.748 -21.911 32.939 Atomic orbital electron populations 1.21815 0.90959 1.04034 1.03450 1.22587 0.96175 0.80468 1.01309 1.86183 1.17476 1.31327 1.88112 1.20169 0.84094 0.90843 0.93600 1.21397 0.97332 0.95207 1.08496 1.21831 0.91440 1.01046 0.92098 1.22198 1.03170 0.91662 1.05041 1.20713 0.88324 0.95379 0.93639 1.20778 1.01305 0.92204 0.98342 1.20897 0.81009 0.81740 0.86267 1.90737 1.32358 1.73313 1.48933 1.45834 1.39441 1.20613 1.30308 1.21705 0.98614 0.89579 0.85665 0.91090 1.22648 1.00722 0.96526 0.95995 1.22062 1.01237 0.94082 0.97655 1.21762 0.97942 0.95417 0.95785 0.92070 1.20913 0.95745 0.93058 0.86865 1.42629 1.34179 1.48424 1.13673 1.19714 1.05617 1.14207 0.97879 0.90423 1.25606 1.01589 1.03271 0.96746 1.69838 1.38387 1.47815 1.06239 0.85050 0.78553 0.78257 0.77771 1.18790 1.22147 1.22168 1.22485 1.03157 0.93001 0.95644 1.66985 1.07185 1.33974 1.18424 0.90862 0.88810 0.91824 0.93789 0.92168 0.82925 0.80475 0.81025 0.84797 0.82991 0.74414 0.90275 0.92902 0.93206 0.92770 0.96028 0.95698 0.79584 0.94106 0.89990 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.07 1.52 6.03 71.98 0.43 1.96 16 3 O -0.32 -7.91 10.12 -90.01 -0.91 -8.82 16 4 C 0.29 7.04 7.49 84.79 0.63 7.68 16 5 C -0.20 -3.58 10.04 22.47 0.23 -3.35 16 6 C -0.04 -0.48 10.17 22.44 0.23 -0.25 16 7 C -0.20 -2.55 9.70 22.36 0.22 -2.33 16 8 C 0.16 2.89 5.77 42.49 0.25 3.13 16 9 C -0.09 -1.05 6.10 29.10 0.18 -0.87 16 10 C 0.51 10.75 7.76 87.66 0.68 11.43 16 11 O -0.57 -18.46 15.01 -3.03 -0.05 -18.51 16 12 N -0.71 -12.02 5.19 -436.44 -2.27 -14.29 16 13 C 0.15 3.46 3.21 46.28 0.15 3.61 16 14 H 0.07 2.01 7.62 -2.38 -0.02 1.99 16 15 C -0.12 -3.14 6.53 31.74 0.21 -2.93 16 16 C -0.11 -3.60 6.19 31.39 0.19 -3.40 16 17 C -0.09 -2.81 2.96 -10.07 -0.03 -2.84 16 18 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 19 C 0.16 6.22 5.27 86.38 0.46 6.67 16 20 N -0.75 -38.22 5.39 -343.46 -1.85 -40.07 16 21 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 22 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 23 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 24 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 25 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 26 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 C -0.10 -2.31 5.98 31.67 0.19 -2.12 16 30 N -0.54 -13.52 8.06 -296.99 -2.39 -15.92 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 1.16 8.10 -2.39 -0.02 1.15 16 35 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.17 0.86 7.94 -2.91 -0.02 0.84 16 39 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.15 0.57 7.86 -2.39 -0.02 0.55 16 41 H 0.42 3.93 8.55 -92.71 -0.79 3.14 16 42 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 1.99 7.61 -2.39 -0.02 1.98 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.37 20.53 7.55 -92.71 -0.70 19.83 16 49 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 50 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 51 H 0.09 1.73 7.73 -2.39 -0.02 1.71 16 Total: -1.00 -81.26 419.57 0.34 -80.93 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.56 Total: 30.47 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 6.05 Total: -2.03 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -6.23 Total: -130.50 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.96 Total: -27.33 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -81.26 0.34 -80.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725660899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.229 kcal (2) G-P(sol) polarization free energy of solvation -81.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds