Wall clock time and date at job start Wed Apr 1 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46895 * 2 1 4 4 C 1.35675 * 117.00215 * 179.97438 * 3 2 1 5 5 C 1.38911 * 119.69126 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.11609 * 179.97438 * 5 4 3 7 7 C 1.38829 * 118.48345 * 359.97438 * 6 5 4 8 8 C 1.38045 * 119.28808 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.58135 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 125.00217 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 H 1.09002 * 110.01444 * 33.61406 * 13 12 10 15 15 C 1.54267 * 110.03684 * 272.17111 * 13 12 10 16 16 C 1.54884 * 104.19823 * 217.10182 * 15 13 12 17 17 C 1.54894 * 102.74567 * 37.94184 * 16 15 13 18 18 C 1.53875 * 110.03469 * 155.00071 * 13 12 10 19 19 H 1.08997 * 110.03524 * 238.57261 * 18 13 12 20 20 C 1.53001 * 110.03171 * 0.02562 * 18 13 12 21 21 N 1.46495 * 109.47131 * 184.99879 * 20 18 13 22 22 C 1.36933 * 119.99904 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00441 * 359.97438 * 22 21 20 24 24 C 1.38818 * 120.00130 * 179.97438 * 22 21 20 25 25 N 1.31623 * 119.99973 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99732 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47346 * 89.99950 * 26 24 22 28 28 H 1.48503 * 109.46784 * 210.00247 * 26 24 22 29 29 H 1.48500 * 109.47359 * 329.99650 * 26 24 22 30 30 N 1.31964 * 120.83600 * 0.27685 * 8 7 6 31 31 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47030 * 300.00011 * 1 2 3 33 33 H 1.08997 * 109.47497 * 59.99647 * 1 2 3 34 34 H 1.09000 * 109.46958 * 240.00541 * 2 1 3 35 35 H 1.08998 * 109.47068 * 120.00039 * 2 1 3 36 36 H 1.08002 * 120.44637 * 359.95780 * 5 4 3 37 37 H 1.07995 * 120.75880 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.35836 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.47210 * 5.00510 * 9 8 7 40 40 H 1.08994 * 109.47551 * 245.00163 * 9 8 7 41 41 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 42 42 H 1.09007 * 110.48286 * 335.78460 * 15 13 12 43 43 H 1.09005 * 110.48370 * 98.42053 * 15 13 12 44 44 H 1.08999 * 110.75953 * 279.62911 * 16 15 13 45 45 H 1.09001 * 110.91727 * 156.32299 * 16 15 13 46 46 H 1.09004 * 110.48072 * 203.37406 * 17 16 15 47 47 H 1.09004 * 110.48424 * 80.73618 * 17 16 15 48 48 H 1.09003 * 109.46920 * 304.99888 * 20 18 13 49 49 H 1.08997 * 109.47078 * 64.99616 * 20 18 13 50 50 H 0.97001 * 120.00099 * 359.97438 * 21 20 18 51 51 H 0.97001 * 119.99714 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8753 2.8116 0.0011 6 6 5.2489 2.9793 0.0022 7 6 6.0539 1.8482 0.0032 8 6 5.4646 0.5999 0.0026 9 6 6.3322 -0.6324 0.0031 10 6 5.9540 -1.5124 1.1666 11 8 5.0670 -1.1727 1.9208 12 7 6.5974 -2.6799 1.3655 13 6 6.2257 -3.5383 2.4929 14 1 5.1561 -3.4573 2.6867 15 6 7.0236 -3.1346 3.7500 16 6 7.3253 -4.4795 4.4566 17 6 7.6073 -5.4335 3.2693 18 6 6.5968 -5.0000 2.1874 19 1 5.7075 -5.6285 2.2337 20 6 7.2383 -5.0992 0.8019 21 7 7.4774 -6.5069 0.4741 22 6 8.0476 -6.8434 -0.7245 23 1 8.3207 -6.0712 -1.4284 24 6 8.2746 -8.1773 -1.0349 25 7 8.8223 -8.5008 -2.1873 26 14 7.8015 -9.5130 0.1822 27 1 6.4056 -9.9477 -0.0777 28 1 8.7178 -10.6713 0.0267 29 1 7.9053 -8.9820 1.5651 30 7 4.1512 0.4719 -0.0044 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.2194 3.6697 0.0004 37 1 5.6847 3.9674 0.0022 38 1 7.1296 1.9439 0.0037 39 1 7.3784 -0.3401 0.0936 40 1 6.1870 -1.1794 -0.9284 41 1 7.3066 -2.9518 0.7622 42 1 7.9507 -2.6347 3.4692 43 1 6.4224 -2.4921 4.3934 44 1 6.4609 -4.8184 5.0275 45 1 8.2014 -4.3935 5.0994 46 1 7.4322 -6.4688 3.5621 47 1 8.6287 -5.3050 2.9109 48 1 6.5702 -4.6617 0.0600 49 1 8.1855 -4.5599 0.8007 50 1 7.2317 -7.2005 1.1061 51 1 8.9812 -9.4328 -2.4040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732626530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:37 Heat of formation + Delta-G solvation = -30.549465 kcal Electronic energy + Delta-G solvation = -30568.706681 eV Core-core repulsion = 26468.535177 eV Total energy + Delta-G solvation = -4100.171504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.91395 -39.97902 -38.44569 -37.75008 -34.56627 -33.59547 -33.23333 -32.36482 -31.58605 -31.20368 -29.08000 -28.66658 -26.98780 -24.72756 -24.14316 -22.96091 -22.33712 -22.16460 -20.74514 -20.42639 -19.20853 -18.41619 -17.70815 -17.27130 -16.72416 -16.34961 -16.17907 -15.82019 -15.31800 -15.18749 -14.58386 -14.48616 -14.21462 -14.11593 -13.91630 -13.90652 -13.48755 -13.22532 -13.13199 -12.74267 -12.73413 -12.64384 -12.30302 -12.23816 -12.08595 -11.76254 -11.64203 -11.60012 -10.98342 -10.97588 -10.91219 -10.84416 -10.54485 -10.50740 -10.36664 -10.08175 -10.02217 -9.81430 -9.63855 -9.60560 -8.99542 -8.85451 -8.57919 -7.28160 -5.81224 -3.16924 0.94690 1.15909 2.74234 2.90030 3.19880 3.34386 3.37448 3.42752 3.68931 3.92740 4.48338 4.54909 4.56665 4.72765 4.80253 4.85428 4.87596 4.90073 4.95468 5.00018 5.04873 5.20016 5.22665 5.28515 5.30163 5.45207 5.50678 5.54807 5.57114 5.59266 5.65836 5.68485 5.73353 5.75298 5.77868 5.87566 5.87685 5.97952 5.98674 6.08798 6.20283 6.26503 6.30605 6.42607 6.52041 6.64634 6.70538 7.14240 7.60920 7.79161 7.93750 8.34062 8.37797 9.16582 9.89129 10.08806 11.37061 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.002419 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.338194 B =11573.950992 C =12047.418817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.327 3.673 5 C -0.198 4.198 6 C -0.042 4.042 7 C -0.207 4.207 8 C 0.189 3.811 9 C -0.098 4.098 10 C 0.520 3.480 11 O -0.530 6.530 12 N -0.724 5.724 13 C 0.152 3.848 14 H 0.088 0.912 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.112 4.112 19 H 0.080 0.920 20 C 0.162 3.838 21 N -0.752 5.752 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.933 5.933 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.276 1.276 30 N -0.511 5.511 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.407 0.593 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.030 0.970 49 H 0.026 0.974 50 H 0.362 0.638 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 22.037 8.281 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.218 6.218 4 C 0.148 3.852 5 C -0.218 4.218 6 C -0.067 4.067 7 C -0.228 4.228 8 C 0.051 3.949 9 C -0.139 4.139 10 C 0.305 3.695 11 O -0.405 6.405 12 N -0.378 5.378 13 C 0.047 3.953 14 H 0.106 0.894 15 C -0.170 4.170 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.131 4.131 19 H 0.099 0.901 20 C 0.034 3.966 21 N -0.398 5.398 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 N -0.234 5.234 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.245 0.755 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.048 0.952 49 H 0.044 0.956 50 H 0.194 0.806 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.251 21.649 8.570 25.054 hybrid contribution 0.487 -0.688 0.420 0.942 sum -8.764 20.961 8.989 24.433 Atomic orbital electron populations 1.21817 0.93178 1.02933 1.02993 1.22610 0.94466 0.80820 1.03003 1.86193 1.16885 1.30979 1.87702 1.19738 0.84084 0.89712 0.91681 1.21035 0.95922 0.95716 1.09148 1.21321 0.92294 0.99258 0.93855 1.21750 1.01341 0.92493 1.07187 1.20168 0.88666 0.93440 0.92577 1.20690 0.99727 0.93580 0.99868 1.20182 0.81881 0.81639 0.85799 1.90705 1.30190 1.72688 1.46961 1.46364 1.39628 1.20502 1.31341 1.21562 0.99833 0.88672 0.85223 0.89365 1.22756 1.00195 0.97534 0.96473 1.22477 1.01164 0.95072 0.97504 1.22406 0.99706 0.98964 0.94220 1.22267 0.99523 0.94510 0.96842 0.90124 1.20668 0.96429 0.87430 0.92046 1.42676 1.75911 1.01481 1.19730 1.19036 1.32438 0.93121 0.92968 0.89235 1.24672 1.00789 0.96825 0.96787 1.69701 1.48970 1.17247 1.22205 0.86552 0.78150 0.82551 0.81310 1.21092 1.21736 1.20251 1.67055 1.05798 1.33047 1.17474 0.90264 0.91793 0.91832 0.91660 0.91115 0.84376 0.84170 0.84512 0.86963 0.86559 0.75464 0.91240 0.91559 0.91637 0.91580 0.91628 0.90748 0.95181 0.95642 0.80574 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.07 0.76 6.03 37.16 0.22 0.99 16 3 O -0.31 -3.95 10.12 -18.73 -0.19 -4.14 16 4 C 0.33 4.27 7.49 -17.12 -0.13 4.14 16 5 C -0.20 -2.03 10.04 -39.28 -0.39 -2.42 16 6 C -0.04 -0.36 10.17 -39.31 -0.40 -0.76 16 7 C -0.21 -1.93 9.71 -39.43 -0.38 -2.31 16 8 C 0.19 2.24 5.75 -82.61 -0.48 1.77 16 9 C -0.10 -1.00 6.10 -29.03 -0.18 -1.18 16 10 C 0.52 6.91 7.76 -10.98 -0.09 6.82 16 11 O -0.53 -8.92 15.00 5.55 0.08 -8.83 16 12 N -0.72 -9.05 4.39 -52.72 -0.23 -9.28 16 13 C 0.15 2.01 3.23 -66.81 -0.22 1.80 16 14 H 0.09 1.28 7.56 -51.93 -0.39 0.89 16 15 C -0.13 -1.55 6.53 -25.07 -0.16 -1.71 16 16 C -0.12 -1.40 6.91 -24.74 -0.17 -1.57 16 17 C -0.12 -1.57 6.08 -25.07 -0.15 -1.72 16 18 C -0.11 -1.63 2.96 -89.50 -0.27 -1.90 16 19 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.16 2.86 4.18 -4.04 -0.02 2.84 16 21 N -0.75 -17.08 5.25 -59.91 -0.31 -17.40 16 22 C -0.25 -6.74 10.47 -15.06 -0.16 -6.90 16 23 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 25 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16 26 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 30 N -0.51 -7.13 8.09 -9.55 -0.08 -7.20 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.14 0.88 7.94 -52.49 -0.42 0.47 16 39 H 0.11 0.78 7.86 -51.93 -0.41 0.37 16 40 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.41 4.74 5.90 -40.82 -0.24 4.50 16 42 H 0.07 0.80 8.05 -51.92 -0.42 0.38 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 48 H 0.03 0.55 7.42 -51.93 -0.39 0.16 16 49 H 0.03 0.44 7.10 -51.93 -0.37 0.07 16 50 H 0.36 8.11 5.41 -40.82 -0.22 7.88 16 51 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 411.46 15.07 6.20 6.20 Total: -1.00 -34.69 411.46 -9.48 -44.17 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -8.34 Total: 10.51 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.67 Total: -2.97 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.15 Total: -61.98 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.11 Total: -12.98 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.69 -9.48 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732626530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.620 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds