Wall clock time and date at job start Wed Apr 1 2020 04:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46895 * 2 1 4 4 C 1.35675 * 117.00215 * 179.97438 * 3 2 1 5 5 C 1.38911 * 119.69126 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.11609 * 179.97438 * 5 4 3 7 7 C 1.38829 * 118.48345 * 359.97438 * 6 5 4 8 8 C 1.38045 * 119.28808 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.58135 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 125.00217 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 H 1.09002 * 110.01444 * 33.61406 * 13 12 10 15 15 C 1.54267 * 110.03684 * 272.17111 * 13 12 10 16 16 C 1.54884 * 104.19823 * 217.10182 * 15 13 12 17 17 C 1.54894 * 102.74567 * 37.94184 * 16 15 13 18 18 C 1.53875 * 110.03469 * 155.00071 * 13 12 10 19 19 H 1.08997 * 110.03524 * 238.57261 * 18 13 12 20 20 C 1.53001 * 110.03171 * 0.02562 * 18 13 12 21 21 N 1.46495 * 109.47131 * 184.99879 * 20 18 13 22 22 C 1.36933 * 119.99904 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00441 * 359.97438 * 22 21 20 24 24 C 1.38818 * 120.00130 * 179.97438 * 22 21 20 25 25 N 1.31623 * 119.99973 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99732 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47346 * 89.99950 * 26 24 22 28 28 H 1.48503 * 109.46784 * 210.00247 * 26 24 22 29 29 H 1.48500 * 109.47359 * 329.99650 * 26 24 22 30 30 N 1.31964 * 120.83600 * 0.27685 * 8 7 6 31 31 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47030 * 300.00011 * 1 2 3 33 33 H 1.08997 * 109.47497 * 59.99647 * 1 2 3 34 34 H 1.09000 * 109.46958 * 240.00541 * 2 1 3 35 35 H 1.08998 * 109.47068 * 120.00039 * 2 1 3 36 36 H 1.08002 * 120.44637 * 359.95780 * 5 4 3 37 37 H 1.07995 * 120.75880 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.35836 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.47210 * 5.00510 * 9 8 7 40 40 H 1.08994 * 109.47551 * 245.00163 * 9 8 7 41 41 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 42 42 H 1.09007 * 110.48286 * 335.78460 * 15 13 12 43 43 H 1.09005 * 110.48370 * 98.42053 * 15 13 12 44 44 H 1.08999 * 110.75953 * 279.62911 * 16 15 13 45 45 H 1.09001 * 110.91727 * 156.32299 * 16 15 13 46 46 H 1.09004 * 110.48072 * 203.37406 * 17 16 15 47 47 H 1.09004 * 110.48424 * 80.73618 * 17 16 15 48 48 H 1.09003 * 109.46920 * 304.99888 * 20 18 13 49 49 H 1.08997 * 109.47078 * 64.99616 * 20 18 13 50 50 H 0.97001 * 120.00099 * 359.97438 * 21 20 18 51 51 H 0.97001 * 119.99714 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8753 2.8116 0.0011 6 6 5.2489 2.9793 0.0022 7 6 6.0539 1.8482 0.0032 8 6 5.4646 0.5999 0.0026 9 6 6.3322 -0.6324 0.0031 10 6 5.9540 -1.5124 1.1666 11 8 5.0670 -1.1727 1.9208 12 7 6.5974 -2.6799 1.3655 13 6 6.2257 -3.5383 2.4929 14 1 5.1561 -3.4573 2.6867 15 6 7.0236 -3.1346 3.7500 16 6 7.3253 -4.4795 4.4566 17 6 7.6073 -5.4335 3.2693 18 6 6.5968 -5.0000 2.1874 19 1 5.7075 -5.6285 2.2337 20 6 7.2383 -5.0992 0.8019 21 7 7.4774 -6.5069 0.4741 22 6 8.0476 -6.8434 -0.7245 23 1 8.3207 -6.0712 -1.4284 24 6 8.2746 -8.1773 -1.0349 25 7 8.8223 -8.5008 -2.1873 26 14 7.8015 -9.5130 0.1822 27 1 6.4056 -9.9477 -0.0777 28 1 8.7178 -10.6713 0.0267 29 1 7.9053 -8.9820 1.5651 30 7 4.1512 0.4719 -0.0044 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.2194 3.6697 0.0004 37 1 5.6847 3.9674 0.0022 38 1 7.1296 1.9439 0.0037 39 1 7.3784 -0.3401 0.0936 40 1 6.1870 -1.1794 -0.9284 41 1 7.3066 -2.9518 0.7622 42 1 7.9507 -2.6347 3.4692 43 1 6.4224 -2.4921 4.3934 44 1 6.4609 -4.8184 5.0275 45 1 8.2014 -4.3935 5.0994 46 1 7.4322 -6.4688 3.5621 47 1 8.6287 -5.3050 2.9109 48 1 6.5702 -4.6617 0.0600 49 1 8.1855 -4.5599 0.8007 50 1 7.2317 -7.2005 1.1061 51 1 8.9812 -9.4328 -2.4040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732626530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:36 Heat of formation + Delta-G solvation = -54.377637 kcal Electronic energy + Delta-G solvation = -30569.739948 eV Core-core repulsion = 26468.535177 eV Total energy + Delta-G solvation = -4101.204771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.76997 -41.03413 -39.44091 -38.76069 -36.35096 -34.66876 -34.03763 -33.54899 -33.14921 -32.04077 -30.56379 -29.57717 -27.94121 -26.32642 -24.94606 -23.94281 -23.80818 -23.15662 -21.75380 -21.45183 -20.57373 -19.54435 -19.25734 -18.35798 -17.62979 -17.28097 -16.94420 -16.86166 -16.59554 -16.34112 -16.08944 -15.68398 -15.40206 -15.10977 -14.98740 -14.96740 -14.71985 -14.55455 -14.28006 -13.93705 -13.60455 -13.55821 -13.43696 -13.39043 -12.98337 -12.93191 -12.86609 -12.67072 -12.47258 -12.30134 -12.05872 -11.95375 -11.81610 -11.74272 -11.72378 -11.56719 -11.46595 -10.96203 -10.90749 -10.77244 -10.47473 -9.98634 -9.39885 -9.28183 -8.01677 -5.34608 0.15331 0.40792 1.38470 1.41276 1.48586 1.71749 2.08422 2.22653 2.49259 2.85634 3.12456 3.29881 3.37288 3.66811 3.77760 3.81439 3.94082 4.01656 4.02031 4.06264 4.16213 4.20946 4.36069 4.36433 4.40647 4.48314 4.48776 4.51995 4.53890 4.54392 4.63026 4.76375 4.79255 4.83122 4.89118 4.91759 4.99491 5.03746 5.08771 5.16072 5.21636 5.24144 5.26119 5.33766 5.47982 5.56646 5.60955 5.77603 6.22158 6.27308 6.58812 6.97065 7.09160 7.31784 7.85530 8.03675 9.19624 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.002419 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.338194 B =11573.950992 C =12047.418817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 O -0.321 6.321 4 C 0.291 3.709 5 C -0.201 4.201 6 C -0.037 4.037 7 C -0.200 4.200 8 C 0.159 3.841 9 C -0.094 4.094 10 C 0.517 3.483 11 O -0.569 6.569 12 N -0.720 5.720 13 C 0.156 3.844 14 H 0.072 0.928 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.104 4.104 19 H 0.076 0.924 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.231 4.231 23 H 0.062 0.938 24 C -0.064 4.064 25 N -0.984 5.984 26 Si 0.950 3.050 27 H -0.283 1.283 28 H -0.297 1.297 29 H -0.248 1.248 30 N -0.544 5.544 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.156 0.844 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.412 0.588 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.026 0.974 49 H 0.038 0.962 50 H 0.365 0.635 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 23.540 10.044 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.006 4.006 3 O -0.229 6.229 4 C 0.113 3.887 5 C -0.221 4.221 6 C -0.062 4.062 7 C -0.220 4.220 8 C 0.022 3.978 9 C -0.134 4.134 10 C 0.304 3.696 11 O -0.447 6.447 12 N -0.374 5.374 13 C 0.050 3.950 14 H 0.090 0.910 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.123 4.123 19 H 0.094 0.906 20 C 0.035 3.965 21 N -0.401 5.401 22 C -0.362 4.362 23 H 0.080 0.920 24 C -0.255 4.255 25 N -0.634 5.634 26 Si 0.778 3.222 27 H -0.209 1.209 28 H -0.224 1.224 29 H -0.172 1.172 30 N -0.267 5.267 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.174 0.826 37 H 0.198 0.802 38 H 0.188 0.812 39 H 0.168 0.832 40 H 0.139 0.861 41 H 0.251 0.749 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.044 0.956 49 H 0.055 0.945 50 H 0.198 0.802 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.629 23.187 10.365 26.824 hybrid contribution 0.321 -1.026 -0.182 1.090 sum -8.308 22.162 10.183 25.766 Atomic orbital electron populations 1.21805 0.90761 1.03992 1.03564 1.22576 0.96299 0.80530 1.01182 1.86174 1.17405 1.31165 1.88135 1.20192 0.84098 0.90839 0.93612 1.21400 0.97287 0.95108 1.08315 1.21835 0.91413 1.00922 0.92014 1.22172 1.03160 0.91577 1.05056 1.20588 0.88303 0.95096 0.93830 1.20785 1.01519 0.92708 0.98351 1.20729 0.81034 0.81725 0.86078 1.90690 1.31847 1.73572 1.48617 1.46342 1.39538 1.20314 1.31197 1.21471 0.99270 0.87950 0.86280 0.90954 1.22690 1.00032 0.97951 0.95538 1.22433 1.02284 0.93678 0.96739 1.22384 0.98693 0.99497 0.94687 1.22170 0.99419 0.95483 0.95257 0.90562 1.20823 0.97047 0.84802 0.93835 1.42691 1.75414 1.03708 1.18249 1.19052 1.30826 0.92447 0.93831 0.92012 1.25470 1.01791 0.99457 0.98799 1.69877 1.51390 1.17509 1.24658 0.85475 0.77365 0.79080 0.80308 1.20938 1.22413 1.17222 1.66973 1.07134 1.34179 1.18441 0.88954 0.91410 0.90964 0.92776 0.93621 0.82598 0.80183 0.81156 0.83209 0.86147 0.74915 0.90631 0.91696 0.90776 0.89887 0.91761 0.91528 0.95642 0.94469 0.80169 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 10.28 71.98 0.74 -1.74 16 2 C 0.07 1.72 6.03 71.98 0.43 2.15 16 3 O -0.32 -8.57 10.12 -89.92 -0.91 -9.48 16 4 C 0.29 7.79 7.49 84.79 0.63 8.43 16 5 C -0.20 -3.90 10.04 22.47 0.23 -3.67 16 6 C -0.04 -0.53 10.17 22.45 0.23 -0.30 16 7 C -0.20 -3.20 9.71 22.37 0.22 -2.98 16 8 C 0.16 3.64 5.75 42.49 0.24 3.89 16 9 C -0.09 -1.80 6.10 29.10 0.18 -1.62 16 10 C 0.52 13.57 7.76 87.66 0.68 14.25 16 11 O -0.57 -19.51 15.00 -3.04 -0.05 -19.56 16 12 N -0.72 -17.40 4.39 -439.09 -1.93 -19.33 16 13 C 0.16 3.97 3.23 45.72 0.15 4.12 16 14 H 0.07 2.11 7.56 -2.39 -0.02 2.09 16 15 C -0.12 -2.67 6.53 31.67 0.21 -2.47 16 16 C -0.11 -2.25 6.91 31.89 0.22 -2.03 16 17 C -0.11 -2.87 6.08 31.67 0.19 -2.67 16 18 C -0.10 -2.89 2.96 -10.07 -0.03 -2.91 16 19 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 20 C 0.16 5.54 4.18 86.38 0.36 5.90 16 21 N -0.76 -33.51 5.25 -343.46 -1.80 -35.31 16 22 C -0.23 -12.70 10.47 84.04 0.88 -11.82 16 23 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 24 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 25 N -0.98 -62.17 13.97 21.65 0.30 -61.87 16 26 Si 0.95 44.68 27.74 68.60 1.90 46.58 16 27 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 28 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 29 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 30 N -0.54 -15.62 8.09 -296.99 -2.40 -18.02 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 35 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 36 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.17 1.47 7.94 -2.91 -0.02 1.45 16 39 H 0.15 1.63 7.86 -2.38 -0.02 1.62 16 40 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.41 9.11 5.90 -92.71 -0.55 8.56 16 42 H 0.08 1.56 8.05 -2.38 -0.02 1.54 16 43 H 0.06 1.45 8.14 -2.38 -0.02 1.44 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.07 1.78 7.76 -2.38 -0.02 1.76 16 48 H 0.03 0.92 7.42 -2.39 -0.02 0.90 16 49 H 0.04 1.23 7.10 -2.39 -0.02 1.21 16 50 H 0.37 15.65 5.41 -92.71 -0.50 15.15 16 51 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -78.04 411.46 0.97 -77.07 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.17 Total: 36.62 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 6.03 Total: 3.30 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -5.83 Total: -134.53 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.96 Total: -29.04 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.58 kcal Total: -78.04 0.97 -77.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732626530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.693 kcal (2) G-P(sol) polarization free energy of solvation -78.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds