Wall clock time and date at job start Wed Apr 1 2020 05:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46830 * 2 1 4 4 C 1.35500 * 116.99523 * 180.02562 * 3 2 1 5 5 C 1.39174 * 119.52274 * 180.02562 * 4 3 2 6 6 C 1.37961 * 119.26035 * 179.72618 * 5 4 3 7 7 C 1.40289 * 118.35697 * 0.50906 * 6 5 4 8 8 C 1.47618 * 120.49664 * 179.75691 * 7 6 5 9 9 O 1.21583 * 119.99547 * 36.07376 * 8 7 6 10 10 N 1.34767 * 119.99942 * 216.07315 * 8 7 6 11 11 C 1.46925 * 120.63343 * 6.49845 * 10 8 7 12 12 C 1.53194 * 108.77547 * 126.37229 * 11 10 8 13 13 C 1.53035 * 109.31536 * 54.63419 * 12 11 10 14 14 C 1.53038 * 109.54046 * 298.64245 * 13 12 11 15 15 H 1.08998 * 109.50152 * 181.31810 * 14 13 12 16 16 C 1.53010 * 109.52068 * 301.39113 * 14 13 12 17 17 C 1.46933 * 120.63133 * 186.48104 * 10 8 7 18 18 H 1.08994 * 109.70285 * 113.76991 * 17 10 8 19 19 C 1.53001 * 109.58094 * 353.41552 * 17 10 8 20 20 N 1.46494 * 109.47396 * 69.58443 * 19 17 10 21 21 C 1.36936 * 120.00358 * 175.22704 * 20 19 17 22 22 H 1.08005 * 120.00040 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00347 * 180.27684 * 21 20 19 24 24 N 1.31621 * 119.99785 * 359.72422 * 23 21 20 25 25 Si 1.86794 * 119.99905 * 179.72713 * 23 21 20 26 26 H 1.48500 * 109.47577 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47075 * 120.00337 * 25 23 21 28 28 H 1.48501 * 109.46752 * 239.99678 * 25 23 21 29 29 C 1.39522 * 119.00330 * 359.49196 * 7 6 5 30 30 N 1.31664 * 120.62730 * 0.24941 * 29 7 6 31 31 H 1.08998 * 109.46904 * 59.99298 * 1 2 3 32 32 H 1.08991 * 109.47132 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46890 * 299.99778 * 1 2 3 34 34 H 1.08999 * 109.46890 * 240.00222 * 2 1 3 35 35 H 1.08993 * 109.47302 * 120.00120 * 2 1 3 36 36 H 1.08001 * 120.37221 * 359.97438 * 5 4 3 37 37 H 1.07995 * 120.81983 * 180.27582 * 6 5 4 38 38 H 1.08997 * 109.58748 * 6.58324 * 11 10 8 39 39 H 1.09000 * 109.70725 * 246.22771 * 11 10 8 40 40 H 1.09007 * 109.49564 * 294.68271 * 12 11 10 41 41 H 1.09001 * 109.49664 * 174.59350 * 12 11 10 42 42 H 1.08998 * 109.46665 * 178.61615 * 13 12 11 43 43 H 1.09003 * 109.45507 * 58.65583 * 13 12 11 44 44 H 1.08996 * 109.47357 * 179.85572 * 16 14 13 45 45 H 1.08993 * 109.46988 * 299.85847 * 16 14 13 46 46 H 1.09006 * 109.46567 * 59.85511 * 16 14 13 47 47 H 1.08997 * 109.47349 * 309.57735 * 19 17 10 48 48 H 1.09005 * 109.46689 * 189.58559 * 19 17 10 49 49 H 0.97002 * 120.00067 * 355.23369 * 20 19 17 50 50 H 0.96995 * 120.00257 * 180.02562 * 24 23 21 51 51 H 1.07996 * 119.68292 * 180.27015 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8709 2.8153 0.0000 6 6 5.2394 2.9897 0.0052 7 6 6.0565 1.8494 -0.0012 8 6 7.5268 1.9813 -0.0014 9 8 8.0566 2.8801 0.6229 10 7 8.2818 1.1055 -0.6936 11 6 7.6553 0.1026 -1.5656 12 6 8.2699 0.2126 -2.9646 13 6 9.7918 0.0914 -2.8598 14 6 10.3383 1.2340 -2.0008 15 1 11.4244 1.1606 -1.9458 16 6 9.9482 2.5752 -2.6256 17 6 9.7472 1.1356 -0.5910 18 1 10.1007 0.2239 -0.1094 19 6 10.1787 2.3510 0.2322 20 7 9.7937 2.1545 1.6319 21 6 10.1640 3.0714 2.5792 22 1 10.7403 3.9393 2.2944 23 6 9.8040 2.8822 3.9064 24 7 9.1021 1.8243 4.2536 25 14 10.3158 4.1291 5.1997 26 1 11.0926 5.2191 4.5565 27 1 9.1054 4.6976 5.8455 28 1 11.1567 3.4614 6.2255 29 6 5.4587 0.5887 -0.0017 30 7 4.1476 0.4682 -0.0012 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.2115 3.6706 0.0004 37 1 5.6710 3.9797 0.0102 38 1 6.5825 0.2867 -1.6223 39 1 7.8340 -0.8955 -1.1655 40 1 8.0109 1.1774 -3.4009 41 1 7.8837 -0.5879 -3.5956 42 1 10.2299 0.1448 -3.8564 43 1 10.0493 -0.8631 -2.4007 44 1 10.3356 3.3883 -2.0119 45 1 10.3690 2.6447 -3.6286 46 1 8.8620 2.6476 -2.6814 47 1 9.6912 3.2449 -0.1567 48 1 11.2603 2.4691 0.1660 49 1 9.2764 1.3747 1.8878 50 1 8.8503 1.6922 5.1809 51 1 6.0772 -0.2965 -0.0021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753816220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:33 Heat of formation + Delta-G solvation = 21.312669 kcal Electronic energy + Delta-G solvation = -32352.779106 eV Core-core repulsion = 28254.856513 eV Total energy + Delta-G solvation = -4097.922593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97382 -40.04640 -38.10968 -37.07059 -34.57491 -33.42757 -32.45803 -32.16757 -31.95477 -30.21265 -29.85602 -27.01270 -26.13970 -24.52255 -24.40386 -23.50522 -22.73609 -22.32082 -21.13975 -20.10941 -18.66176 -18.37613 -17.41580 -16.77028 -16.46035 -16.39359 -15.46447 -15.15424 -14.98726 -14.60599 -14.40793 -14.23464 -14.15943 -13.89061 -13.63702 -13.58371 -13.22787 -12.97878 -12.89206 -12.74057 -12.49864 -12.46084 -12.34484 -12.17286 -12.00497 -11.72144 -11.52803 -11.30670 -10.98173 -10.91871 -10.78525 -10.70793 -10.60483 -10.31108 -10.16462 -9.86504 -9.82208 -9.72301 -9.49878 -8.73642 -8.52265 -8.20592 -8.05369 -6.50787 -5.54726 -2.73863 0.97054 1.26584 2.92069 3.31123 3.35970 3.55608 3.60375 3.62658 3.94884 4.23281 4.70793 4.74390 4.80105 4.81692 4.84217 4.91591 4.96417 4.97532 5.09406 5.12094 5.14160 5.24826 5.31875 5.44198 5.51307 5.55683 5.62330 5.65640 5.72947 5.77649 5.79687 5.81178 5.83201 5.87892 5.94313 5.97076 6.03227 6.15498 6.21791 6.22817 6.33387 6.38953 6.52231 6.56621 6.70461 6.96242 7.17553 7.32316 7.77912 7.88910 7.94019 8.63431 8.90994 9.74686 10.34810 10.68654 11.69186 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008234 B = 0.004107 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.797634 B = 6816.571324 C = 9416.454107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.307 6.307 4 C 0.327 3.673 5 C -0.195 4.195 6 C 0.006 3.994 7 C -0.196 4.196 8 C 0.524 3.476 9 O -0.436 6.436 10 N -0.608 5.608 11 C 0.100 3.900 12 C -0.135 4.135 13 C -0.112 4.112 14 C -0.100 4.100 15 H 0.079 0.921 16 C -0.144 4.144 17 C 0.149 3.851 18 H 0.069 0.931 19 C 0.158 3.842 20 N -0.698 5.698 21 C -0.205 4.205 22 H 0.066 0.934 23 C -0.022 4.022 24 N -0.937 5.937 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.296 1.296 29 C 0.164 3.836 30 N -0.544 5.544 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.013 0.987 49 H 0.379 0.621 50 H 0.249 0.751 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 -5.932 -17.962 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.215 6.215 4 C 0.149 3.851 5 C -0.216 4.216 6 C -0.019 4.019 7 C -0.202 4.202 8 C 0.309 3.691 9 O -0.304 6.304 10 N -0.346 5.346 11 C -0.023 4.023 12 C -0.174 4.174 13 C -0.150 4.150 14 C -0.120 4.120 15 H 0.097 0.903 16 C -0.201 4.201 17 C 0.046 3.954 18 H 0.087 0.913 19 C 0.031 3.969 20 N -0.340 5.340 21 C -0.337 4.337 22 H 0.084 0.916 23 C -0.217 4.217 24 N -0.588 5.588 25 Si 0.733 3.267 26 H -0.208 1.208 27 H -0.223 1.223 28 H -0.223 1.223 29 C 0.007 3.993 30 N -0.268 5.268 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.030 0.970 49 H 0.212 0.788 50 H 0.059 0.941 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.076 -5.867 -17.501 21.526 hybrid contribution 0.358 0.771 0.968 1.288 sum -10.718 -5.095 -16.533 20.351 Atomic orbital electron populations 1.21820 0.93165 1.02809 1.03238 1.22601 0.94578 0.81148 1.02661 1.86183 1.17074 1.30673 1.87543 1.19932 0.83831 0.90072 0.91286 1.20967 0.95565 0.95656 1.09381 1.21452 0.91498 0.99305 0.89685 1.21039 0.95955 0.94700 1.08499 1.17867 0.85199 0.84651 0.81369 1.91191 1.70620 1.30521 1.38082 1.47643 1.06112 1.34343 1.46489 1.21970 0.97951 0.92271 0.90145 1.21957 0.96242 1.02403 0.96762 1.21529 0.95248 0.98511 0.99716 1.21464 1.00128 0.95516 0.94853 0.90300 1.21849 1.01711 0.96944 0.99594 1.21504 0.78488 1.00725 0.94728 0.91316 1.21011 0.95224 0.94626 0.86060 1.42281 1.63809 1.26834 1.01079 1.19186 1.25497 1.01449 0.87585 0.91646 1.24612 1.01761 0.98206 0.97072 1.69661 1.43988 1.28753 1.16365 0.86175 0.77450 0.80793 0.82245 1.20811 1.22291 1.22329 1.22800 0.88917 0.96788 0.90777 1.67303 1.06373 1.32805 1.20302 0.91752 0.90364 0.91653 0.91605 0.91470 0.83880 0.83375 0.89722 0.91667 0.91236 0.91337 0.92045 0.91887 0.91963 0.93503 0.92499 0.93373 0.96963 0.78790 0.94102 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.07 0.67 6.02 37.16 0.22 0.89 16 3 O -0.31 -3.96 10.10 -18.19 -0.18 -4.14 16 4 C 0.33 4.65 7.49 -16.96 -0.13 4.52 16 5 C -0.20 -2.64 10.02 -39.34 -0.39 -3.04 16 6 C 0.01 0.10 9.75 -38.91 -0.38 -0.28 16 7 C -0.20 -3.18 5.25 -104.82 -0.55 -3.73 16 8 C 0.52 9.70 6.77 -12.44 -0.08 9.62 16 9 O -0.44 -10.15 10.73 5.29 0.06 -10.10 16 10 N -0.61 -9.35 2.41 -166.41 -0.40 -9.75 16 11 C 0.10 1.14 4.80 -3.71 -0.02 1.13 16 12 C -0.14 -1.31 5.74 -26.61 -0.15 -1.46 16 13 C -0.11 -1.13 5.43 -26.69 -0.14 -1.27 16 14 C -0.10 -1.25 2.80 -90.50 -0.25 -1.51 16 15 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 16 C -0.14 -1.81 8.22 37.16 0.31 -1.50 16 17 C 0.15 2.42 2.63 -67.60 -0.18 2.24 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.16 3.32 4.05 -4.04 -0.02 3.30 16 20 N -0.70 -18.39 3.25 -59.91 -0.19 -18.59 16 21 C -0.21 -6.04 9.71 -15.06 -0.15 -6.19 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 23 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 24 N -0.94 -29.76 13.06 55.49 0.72 -29.03 16 25 Si 0.90 23.79 29.55 -169.99 -5.02 18.76 16 26 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 28 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 29 C 0.16 2.39 8.54 -17.14 -0.15 2.25 16 30 N -0.54 -7.90 9.18 -12.96 -0.12 -8.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.08 0.94 4.59 -51.93 -0.24 0.70 16 39 H 0.07 0.68 8.06 -51.93 -0.42 0.27 16 40 H 0.07 0.72 6.34 -51.92 -0.33 0.39 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 47 H 0.05 1.08 5.03 -51.93 -0.26 0.82 16 48 H 0.01 0.27 8.13 -51.93 -0.42 -0.15 16 49 H 0.38 10.66 7.10 -40.82 -0.29 10.37 16 50 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 51 H 0.17 2.14 6.19 -52.49 -0.33 1.82 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -34.87 392.30 -8.98 -43.85 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.97 Total: 7.65 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.78 Total: 3.46 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: 0.01 Total: -65.39 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.13 Total: -14.24 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.02 Total: 18.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.87 -8.98 -43.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753816220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.159 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds