Wall clock time and date at job start Wed Apr 1 2020 05:18:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42895 * 109.47000 * 2 1
4 4 C 1.35501 * 116.99802 * 180.02562 * 3 2 1
5 5 C 1.39173 * 119.52795 * 179.73183 * 4 3 2
6 6 C 1.37953 * 119.26363 * 179.70372 * 5 4 3
7 7 C 1.40287 * 118.35755 * 0.55068 * 6 5 4
8 8 C 1.47613 * 120.49883 * 179.75266 * 7 6 5
9 9 O 1.21580 * 120.00136 * 359.97094 * 8 7 6
10 10 N 1.34770 * 119.99865 * 179.97438 * 8 7 6
11 11 C 1.46508 * 119.99997 * 180.02562 * 10 8 7
12 12 H 1.09001 * 109.46722 * 324.99538 * 11 10 8
13 13 C 1.52992 * 109.47229 * 84.99337 * 11 10 8
14 14 C 1.53007 * 109.47067 * 60.00307 * 13 11 10
15 15 C 1.52998 * 109.47073 * 59.99854 * 14 13 11
16 16 C 1.52999 * 109.47167 * 300.00234 * 15 14 13
17 17 C 1.52994 * 109.46883 * 204.99695 * 11 10 8
18 18 H 1.09007 * 109.47233 * 179.97438 * 17 11 10
19 19 C 1.53005 * 109.47641 * 59.99905 * 17 11 10
20 20 N 1.46494 * 109.47275 * 174.99872 * 19 17 11
21 21 C 1.36945 * 119.99831 * 180.02562 * 20 19 17
22 22 H 1.07999 * 119.99481 * 359.97438 * 21 20 19
23 23 C 1.38807 * 119.99906 * 180.02562 * 21 20 19
24 24 N 1.31622 * 120.00161 * 359.97438 * 23 21 20
25 25 Si 1.86799 * 119.99906 * 180.02562 * 23 21 20
26 26 H 1.48495 * 109.47456 * 89.99768 * 25 23 21
27 27 H 1.48504 * 109.46995 * 209.99814 * 25 23 21
28 28 H 1.48503 * 109.46936 * 329.99475 * 25 23 21
29 29 C 1.39528 * 119.00317 * 359.72747 * 7 6 5
30 30 N 1.31663 * 120.62423 * 359.97438 * 29 7 6
31 31 H 1.09001 * 109.47002 * 59.99969 * 1 2 3
32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3
33 33 H 1.09000 * 109.47050 * 300.00235 * 1 2 3
34 34 H 1.09001 * 109.46998 * 119.99473 * 2 1 3
35 35 H 1.09000 * 109.47050 * 239.99764 * 2 1 3
36 36 H 1.08000 * 120.36772 * 359.97223 * 5 4 3
37 37 H 1.07997 * 120.82067 * 180.27577 * 6 5 4
38 38 H 0.96996 * 120.00511 * 359.97438 * 10 8 7
39 39 H 1.09008 * 109.47059 * 180.02562 * 13 11 10
40 40 H 1.08999 * 109.47525 * 299.99834 * 13 11 10
41 41 H 1.09005 * 109.46838 * 179.97438 * 14 13 11
42 42 H 1.08997 * 109.47015 * 299.99445 * 14 13 11
43 43 H 1.09008 * 109.47053 * 59.99992 * 15 14 13
44 44 H 1.09001 * 109.47159 * 179.97438 * 15 14 13
45 45 H 1.08999 * 109.47398 * 180.02562 * 16 15 14
46 46 H 1.09008 * 109.46937 * 299.99829 * 16 15 14
47 47 H 1.09000 * 109.46598 * 295.00144 * 19 17 11
48 48 H 1.09004 * 109.46987 * 54.99518 * 19 17 11
49 49 H 0.96997 * 120.00704 * 359.97438 * 20 19 17
50 50 H 0.97002 * 119.99526 * 180.02562 * 24 23 21
51 51 H 1.07994 * 119.68401 * 180.02562 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.3497 1.5248 -0.0005
5 6 3.8710 2.8151 -0.0062
6 6 5.2395 2.9896 -0.0005
7 6 6.0566 1.8493 -0.0010
8 6 7.5268 1.9811 -0.0005
9 8 8.0383 3.0841 -0.0003
10 7 8.3022 0.8788 -0.0005
11 6 9.7614 1.0096 0.0006
12 1 10.0484 1.8807 -0.5884
13 6 10.2572 1.1799 1.4379
14 6 9.8542 -0.0428 2.2646
15 6 10.4793 -1.2992 1.6550
16 6 9.9836 -1.4695 0.2176
17 6 10.3864 -0.2467 -0.6091
18 1 11.4721 -0.1493 -0.6087
19 6 9.8907 -0.4171 -2.0465
20 7 10.5792 -1.5502 -2.6695
21 6 10.2967 -1.8952 -3.9643
22 1 9.5660 -1.3321 -4.5259
23 6 10.9486 -2.9692 -4.5544
24 7 11.8388 -3.6557 -3.8697
25 14 10.5638 -3.4393 -6.3208
26 1 11.4716 -2.7043 -7.2378
27 1 10.7588 -4.9008 -6.4978
28 1 9.1550 -3.0867 -6.6312
29 6 5.4587 0.5886 -0.0014
30 7 4.1476 0.4681 -0.0008
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3633 0.5139 0.8900
34 1 1.8934 -0.5138 0.8900
35 1 1.8934 -0.5139 -0.8900
36 1 3.2116 3.6704 -0.0107
37 1 5.6711 3.9796 -0.0003
38 1 7.8942 -0.0012 -0.0003
39 1 11.3429 1.2777 1.4386
40 1 9.8119 2.0750 1.8722
41 1 10.2078 0.0784 3.2886
42 1 8.7686 -0.1401 2.2640
43 1 11.5651 -1.2018 1.6557
44 1 10.1927 -2.1702 2.2443
45 1 10.4286 -2.3648 -0.2166
46 1 8.8979 -1.5669 0.2169
47 1 8.8167 -0.6031 -2.0407
48 1 10.0992 0.4907 -2.6127
49 1 11.2357 -2.0557 -2.1652
50 1 12.2946 -4.4060 -4.2823
51 1 6.0772 -0.2967 -0.0013
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754343754.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:18:41
Heat of formation + Delta-G solvation = -45.085013 kcal
Electronic energy + Delta-G solvation = -30811.591565 eV
Core-core repulsion = 26710.789752 eV
Total energy + Delta-G solvation = -4100.801813 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.15326 -40.15782 -38.59777 -37.68225 -34.66506 -33.81092 -32.81454 -32.44095
-31.92737 -30.81557 -29.70950 -29.11206 -25.33893 -24.65030 -24.48300 -23.02075
-22.69456 -22.14246 -21.24623 -20.53504 -19.04474 -18.89309 -18.10369 -17.22939
-17.00367 -16.65574 -15.63189 -15.38072 -15.16740 -14.94717 -14.71947 -14.39529
-14.31282 -14.28409 -13.85749 -13.67936 -13.52702 -13.26618 -13.09494 -13.06850
-12.84824 -12.69961 -12.62479 -12.10150 -11.96668 -11.92475 -11.68315 -11.42139
-11.09678 -10.90264 -10.88959 -10.73416 -10.39513 -10.28258 -10.27556 -10.20160
-9.98638 -9.87295 -9.74263 -9.62880 -9.02827 -8.87351 -8.76162 -6.92029
-5.77321 -3.05500 0.47703 0.89611 2.62752 2.77000 3.14368 3.43332
3.48820 3.50020 3.61978 3.86083 4.48540 4.56495 4.57854 4.64144
4.65632 4.72628 4.81315 4.87363 4.88636 4.93130 5.04100 5.23805
5.26043 5.31582 5.33082 5.46411 5.49269 5.56602 5.59497 5.62450
5.66556 5.68435 5.74367 5.81048 5.82215 6.02045 6.04835 6.14130
6.15518 6.23063 6.26865 6.36811 6.46858 6.55702 6.67089 6.80177
6.85278 6.86565 7.42035 7.51288 7.70148 8.19468 8.41968 9.53330
10.10896 10.45654 11.45536
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008023 B = 0.002923 C = 0.002388
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3489.254756 B = 9578.367183 C =11721.289081
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.063 3.937
3 O -0.304 6.304
4 C 0.342 3.658
5 C -0.199 4.199
6 C 0.017 3.983
7 C -0.224 4.224
8 C 0.568 3.432
9 O -0.541 6.541
10 N -0.709 5.709
11 C 0.156 3.844
12 H 0.090 0.910
13 C -0.128 4.128
14 C -0.116 4.116
15 C -0.121 4.121
16 C -0.110 4.110
17 C -0.102 4.102
18 H 0.087 0.913
19 C 0.160 3.840
20 N -0.730 5.730
21 C -0.238 4.238
22 H 0.069 0.931
23 C -0.014 4.014
24 N -0.934 5.934
25 Si 0.906 3.094
26 H -0.290 1.290
27 H -0.291 1.291
28 H -0.282 1.282
29 C 0.181 3.819
30 N -0.542 5.542
31 H 0.065 0.935
32 H 0.080 0.920
33 H 0.064 0.936
34 H 0.068 0.932
35 H 0.070 0.930
36 H 0.148 0.852
37 H 0.155 0.845
38 H 0.399 0.601
39 H 0.072 0.928
40 H 0.064 0.936
41 H 0.057 0.943
42 H 0.058 0.942
43 H 0.063 0.937
44 H 0.059 0.941
45 H 0.080 0.920
46 H 0.053 0.947
47 H 0.017 0.983
48 H 0.018 0.982
49 H 0.384 0.616
50 H 0.255 0.745
51 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.542 9.683 14.809 24.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.012 4.012
3 O -0.211 6.211
4 C 0.164 3.836
5 C -0.219 4.219
6 C -0.009 4.009
7 C -0.229 4.229
8 C 0.355 3.645
9 O -0.420 6.420
10 N -0.361 5.361
11 C 0.051 3.949
12 H 0.108 0.892
13 C -0.167 4.167
14 C -0.154 4.154
15 C -0.159 4.159
16 C -0.148 4.148
17 C -0.122 4.122
18 H 0.105 0.895
19 C 0.032 3.968
20 N -0.375 5.375
21 C -0.369 4.369
22 H 0.087 0.913
23 C -0.209 4.209
24 N -0.583 5.583
25 Si 0.737 3.263
26 H -0.217 1.217
27 H -0.218 1.218
28 H -0.208 1.208
29 C 0.023 3.977
30 N -0.265 5.265
31 H 0.084 0.916
32 H 0.099 0.901
33 H 0.083 0.917
34 H 0.087 0.913
35 H 0.088 0.912
36 H 0.166 0.834
37 H 0.172 0.828
38 H 0.236 0.764
39 H 0.091 0.909
40 H 0.083 0.917
41 H 0.076 0.924
42 H 0.076 0.924
43 H 0.082 0.918
44 H 0.078 0.922
45 H 0.098 0.902
46 H 0.072 0.928
47 H 0.035 0.965
48 H 0.036 0.964
49 H 0.218 0.782
50 H 0.065 0.935
51 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -16.864 9.806 14.636 24.388
hybrid contribution 0.249 -0.432 -0.925 1.051
sum -16.616 9.374 13.711 23.494
Atomic orbital electron populations
1.21830 0.92863 1.03078 1.03307 1.22694 0.94857 0.80654 1.02973
1.86205 1.16752 1.31222 1.86892 1.20061 0.84112 0.90022 0.89441
1.21048 0.95603 0.95836 1.09439 1.21521 0.91452 0.99497 0.88415
1.20865 0.94895 0.95118 1.12061 1.17830 0.85675 0.84697 0.76316
1.90766 1.74953 1.25768 1.50493 1.46030 1.07314 1.08563 1.74228
1.20996 0.78328 0.99310 0.96251 0.89201 1.21906 1.01309 0.98235
0.95226 1.21497 1.00488 0.94890 0.98478 1.21591 1.00702 0.97166
0.96397 1.21533 1.00283 0.98901 0.94084 1.21642 1.01163 0.93284
0.96068 0.89492 1.20644 0.95060 0.91455 0.89633 1.42360 1.48610
1.33873 1.12651 1.19215 1.18380 1.10215 0.89087 0.91330 1.24716
0.99335 0.98607 0.98287 1.69655 1.29761 1.22486 1.36348 0.86209
0.77744 0.77435 0.84932 1.21746 1.21784 1.20806 1.22656 0.89271
0.96377 0.89361 1.67341 1.06281 1.32821 1.20101 0.91582 0.90124
0.91665 0.91318 0.91181 0.83422 0.82773 0.76423 0.90911 0.91692
0.92449 0.92362 0.91842 0.92243 0.90170 0.92849 0.96503 0.96406
0.78200 0.93547 0.81995
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16
2 C 0.06 0.52 6.02 37.16 0.22 0.75 16
3 O -0.30 -3.12 10.10 -18.20 -0.18 -3.31 16
4 C 0.34 3.78 7.49 -16.96 -0.13 3.65 16
5 C -0.20 -1.92 10.02 -39.34 -0.39 -2.31 16
6 C 0.02 0.17 9.70 -38.92 -0.38 -0.20 16
7 C -0.22 -2.59 5.89 -104.82 -0.62 -3.21 16
8 C 0.57 7.60 7.74 -12.44 -0.10 7.50 16
9 O -0.54 -8.79 16.08 5.30 0.09 -8.70 16
10 N -0.71 -8.72 3.57 -54.83 -0.20 -8.92 16
11 C 0.16 2.06 2.23 -67.93 -0.15 1.91 16
12 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16
13 C -0.13 -1.48 5.60 -26.73 -0.15 -1.63 16
14 C -0.12 -1.22 5.77 -26.73 -0.15 -1.37 16
15 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16
16 C -0.11 -1.52 4.90 -26.73 -0.13 -1.65 16
17 C -0.10 -1.53 2.02 -90.62 -0.18 -1.71 16
18 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16
19 C 0.16 3.09 5.42 -4.04 -0.02 3.07 16
20 N -0.73 -17.90 5.33 -59.91 -0.32 -18.21 16
21 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16
22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16
24 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16
25 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16
26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
28 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16
29 C 0.18 1.98 10.71 -17.14 -0.18 1.80 16
30 N -0.54 -6.28 9.18 -12.96 -0.12 -6.40 16
31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16
35 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16
36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16
37 H 0.15 1.46 7.73 -52.49 -0.41 1.05 16
38 H 0.40 4.40 4.72 -40.82 -0.19 4.21 16
39 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16
40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
42 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16
43 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16
44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
45 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16
46 H 0.05 0.68 6.51 -51.92 -0.34 0.35 16
47 H 0.02 0.33 7.61 -51.93 -0.40 -0.07 16
48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
49 H 0.38 9.81 6.85 -40.82 -0.28 9.53 16
50 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16
51 H 0.16 1.47 6.41 -52.49 -0.34 1.13 16
LS Contribution 407.40 15.07 6.14 6.14
Total: -1.00 -32.57 407.40 -9.42 -41.99
By element:
Atomic # 1 Polarization: 18.04 SS G_CDS: -8.15 Total: 9.89 kcal
Atomic # 6 Polarization: -0.32 SS G_CDS: -2.39 Total: -2.70 kcal
Atomic # 7 Polarization: -60.78 SS G_CDS: 0.09 Total: -60.69 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: -0.10 Total: -12.01 kcal
Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -32.57 -9.42 -41.99 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754343754.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.095 kcal
(2) G-P(sol) polarization free energy of solvation -32.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.660 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.085 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds