Wall clock time and date at job start Wed Apr 1 2020 05:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.35501 * 116.99802 * 180.02562 * 3 2 1 5 5 C 1.39173 * 119.52795 * 179.73183 * 4 3 2 6 6 C 1.37953 * 119.26363 * 179.70372 * 5 4 3 7 7 C 1.40287 * 118.35755 * 0.55068 * 6 5 4 8 8 C 1.47613 * 120.49883 * 179.75266 * 7 6 5 9 9 O 1.21580 * 120.00136 * 359.97094 * 8 7 6 10 10 N 1.34770 * 119.99865 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99997 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46722 * 324.99538 * 11 10 8 13 13 C 1.52992 * 109.47229 * 84.99337 * 11 10 8 14 14 C 1.53007 * 109.47067 * 60.00307 * 13 11 10 15 15 C 1.52998 * 109.47073 * 59.99854 * 14 13 11 16 16 C 1.52999 * 109.47167 * 300.00234 * 15 14 13 17 17 C 1.52994 * 109.46883 * 204.99695 * 11 10 8 18 18 H 1.09007 * 109.47233 * 179.97438 * 17 11 10 19 19 C 1.53005 * 109.47641 * 59.99905 * 17 11 10 20 20 N 1.46494 * 109.47275 * 174.99872 * 19 17 11 21 21 C 1.36945 * 119.99831 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99481 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99906 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00161 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99906 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47456 * 89.99768 * 25 23 21 27 27 H 1.48504 * 109.46995 * 209.99814 * 25 23 21 28 28 H 1.48503 * 109.46936 * 329.99475 * 25 23 21 29 29 C 1.39528 * 119.00317 * 359.72747 * 7 6 5 30 30 N 1.31663 * 120.62423 * 359.97438 * 29 7 6 31 31 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 34 34 H 1.09001 * 109.46998 * 119.99473 * 2 1 3 35 35 H 1.09000 * 109.47050 * 239.99764 * 2 1 3 36 36 H 1.08000 * 120.36772 * 359.97223 * 5 4 3 37 37 H 1.07997 * 120.82067 * 180.27577 * 6 5 4 38 38 H 0.96996 * 120.00511 * 359.97438 * 10 8 7 39 39 H 1.09008 * 109.47059 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47525 * 299.99834 * 13 11 10 41 41 H 1.09005 * 109.46838 * 179.97438 * 14 13 11 42 42 H 1.08997 * 109.47015 * 299.99445 * 14 13 11 43 43 H 1.09008 * 109.47053 * 59.99992 * 15 14 13 44 44 H 1.09001 * 109.47159 * 179.97438 * 15 14 13 45 45 H 1.08999 * 109.47398 * 180.02562 * 16 15 14 46 46 H 1.09008 * 109.46937 * 299.99829 * 16 15 14 47 47 H 1.09000 * 109.46598 * 295.00144 * 19 17 11 48 48 H 1.09004 * 109.46987 * 54.99518 * 19 17 11 49 49 H 0.96997 * 120.00704 * 359.97438 * 20 19 17 50 50 H 0.97002 * 119.99526 * 180.02562 * 24 23 21 51 51 H 1.07994 * 119.68401 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8710 2.8151 -0.0062 6 6 5.2395 2.9896 -0.0005 7 6 6.0566 1.8493 -0.0010 8 6 7.5268 1.9811 -0.0005 9 8 8.0383 3.0841 -0.0003 10 7 8.3022 0.8788 -0.0005 11 6 9.7614 1.0096 0.0006 12 1 10.0484 1.8807 -0.5884 13 6 10.2572 1.1799 1.4379 14 6 9.8542 -0.0428 2.2646 15 6 10.4793 -1.2992 1.6550 16 6 9.9836 -1.4695 0.2176 17 6 10.3864 -0.2467 -0.6091 18 1 11.4721 -0.1493 -0.6087 19 6 9.8907 -0.4171 -2.0465 20 7 10.5792 -1.5502 -2.6695 21 6 10.2967 -1.8952 -3.9643 22 1 9.5660 -1.3321 -4.5259 23 6 10.9486 -2.9692 -4.5544 24 7 11.8388 -3.6557 -3.8697 25 14 10.5638 -3.4393 -6.3208 26 1 11.4716 -2.7043 -7.2378 27 1 10.7588 -4.9008 -6.4978 28 1 9.1550 -3.0867 -6.6312 29 6 5.4587 0.5886 -0.0014 30 7 4.1476 0.4681 -0.0008 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 3.2116 3.6704 -0.0107 37 1 5.6711 3.9796 -0.0003 38 1 7.8942 -0.0012 -0.0003 39 1 11.3429 1.2777 1.4386 40 1 9.8119 2.0750 1.8722 41 1 10.2078 0.0784 3.2886 42 1 8.7686 -0.1401 2.2640 43 1 11.5651 -1.2018 1.6557 44 1 10.1927 -2.1702 2.2443 45 1 10.4286 -2.3648 -0.2166 46 1 8.8979 -1.5669 0.2169 47 1 8.8167 -0.6031 -2.0407 48 1 10.0992 0.4907 -2.6127 49 1 11.2357 -2.0557 -2.1652 50 1 12.2946 -4.4060 -4.2823 51 1 6.0772 -0.2967 -0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754343754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:41 Heat of formation + Delta-G solvation = -45.085013 kcal Electronic energy + Delta-G solvation = -30811.591565 eV Core-core repulsion = 26710.789752 eV Total energy + Delta-G solvation = -4100.801813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15326 -40.15782 -38.59777 -37.68225 -34.66506 -33.81092 -32.81454 -32.44095 -31.92737 -30.81557 -29.70950 -29.11206 -25.33893 -24.65030 -24.48300 -23.02075 -22.69456 -22.14246 -21.24623 -20.53504 -19.04474 -18.89309 -18.10369 -17.22939 -17.00367 -16.65574 -15.63189 -15.38072 -15.16740 -14.94717 -14.71947 -14.39529 -14.31282 -14.28409 -13.85749 -13.67936 -13.52702 -13.26618 -13.09494 -13.06850 -12.84824 -12.69961 -12.62479 -12.10150 -11.96668 -11.92475 -11.68315 -11.42139 -11.09678 -10.90264 -10.88959 -10.73416 -10.39513 -10.28258 -10.27556 -10.20160 -9.98638 -9.87295 -9.74263 -9.62880 -9.02827 -8.87351 -8.76162 -6.92029 -5.77321 -3.05500 0.47703 0.89611 2.62752 2.77000 3.14368 3.43332 3.48820 3.50020 3.61978 3.86083 4.48540 4.56495 4.57854 4.64144 4.65632 4.72628 4.81315 4.87363 4.88636 4.93130 5.04100 5.23805 5.26043 5.31582 5.33082 5.46411 5.49269 5.56602 5.59497 5.62450 5.66556 5.68435 5.74367 5.81048 5.82215 6.02045 6.04835 6.14130 6.15518 6.23063 6.26865 6.36811 6.46858 6.55702 6.67089 6.80177 6.85278 6.86565 7.42035 7.51288 7.70148 8.19468 8.41968 9.53330 10.10896 10.45654 11.45536 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008023 B = 0.002923 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.254756 B = 9578.367183 C =11721.289081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.304 6.304 4 C 0.342 3.658 5 C -0.199 4.199 6 C 0.017 3.983 7 C -0.224 4.224 8 C 0.568 3.432 9 O -0.541 6.541 10 N -0.709 5.709 11 C 0.156 3.844 12 H 0.090 0.910 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.110 4.110 17 C -0.102 4.102 18 H 0.087 0.913 19 C 0.160 3.840 20 N -0.730 5.730 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.181 3.819 30 N -0.542 5.542 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.017 0.983 48 H 0.018 0.982 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.542 9.683 14.809 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.211 6.211 4 C 0.164 3.836 5 C -0.219 4.219 6 C -0.009 4.009 7 C -0.229 4.229 8 C 0.355 3.645 9 O -0.420 6.420 10 N -0.361 5.361 11 C 0.051 3.949 12 H 0.108 0.892 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.122 4.122 18 H 0.105 0.895 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.023 3.977 30 N -0.265 5.265 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.236 0.764 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.036 0.964 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.864 9.806 14.636 24.388 hybrid contribution 0.249 -0.432 -0.925 1.051 sum -16.616 9.374 13.711 23.494 Atomic orbital electron populations 1.21830 0.92863 1.03078 1.03307 1.22694 0.94857 0.80654 1.02973 1.86205 1.16752 1.31222 1.86892 1.20061 0.84112 0.90022 0.89441 1.21048 0.95603 0.95836 1.09439 1.21521 0.91452 0.99497 0.88415 1.20865 0.94895 0.95118 1.12061 1.17830 0.85675 0.84697 0.76316 1.90766 1.74953 1.25768 1.50493 1.46030 1.07314 1.08563 1.74228 1.20996 0.78328 0.99310 0.96251 0.89201 1.21906 1.01309 0.98235 0.95226 1.21497 1.00488 0.94890 0.98478 1.21591 1.00702 0.97166 0.96397 1.21533 1.00283 0.98901 0.94084 1.21642 1.01163 0.93284 0.96068 0.89492 1.20644 0.95060 0.91455 0.89633 1.42360 1.48610 1.33873 1.12651 1.19215 1.18380 1.10215 0.89087 0.91330 1.24716 0.99335 0.98607 0.98287 1.69655 1.29761 1.22486 1.36348 0.86209 0.77744 0.77435 0.84932 1.21746 1.21784 1.20806 1.22656 0.89271 0.96377 0.89361 1.67341 1.06281 1.32821 1.20101 0.91582 0.90124 0.91665 0.91318 0.91181 0.83422 0.82773 0.76423 0.90911 0.91692 0.92449 0.92362 0.91842 0.92243 0.90170 0.92849 0.96503 0.96406 0.78200 0.93547 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.52 6.02 37.16 0.22 0.75 16 3 O -0.30 -3.12 10.10 -18.20 -0.18 -3.31 16 4 C 0.34 3.78 7.49 -16.96 -0.13 3.65 16 5 C -0.20 -1.92 10.02 -39.34 -0.39 -2.31 16 6 C 0.02 0.17 9.70 -38.92 -0.38 -0.20 16 7 C -0.22 -2.59 5.89 -104.82 -0.62 -3.21 16 8 C 0.57 7.60 7.74 -12.44 -0.10 7.50 16 9 O -0.54 -8.79 16.08 5.30 0.09 -8.70 16 10 N -0.71 -8.72 3.57 -54.83 -0.20 -8.92 16 11 C 0.16 2.06 2.23 -67.93 -0.15 1.91 16 12 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 13 C -0.13 -1.48 5.60 -26.73 -0.15 -1.63 16 14 C -0.12 -1.22 5.77 -26.73 -0.15 -1.37 16 15 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 16 C -0.11 -1.52 4.90 -26.73 -0.13 -1.65 16 17 C -0.10 -1.53 2.02 -90.62 -0.18 -1.71 16 18 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 19 C 0.16 3.09 5.42 -4.04 -0.02 3.07 16 20 N -0.73 -17.90 5.33 -59.91 -0.32 -18.21 16 21 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 25 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 29 C 0.18 1.98 10.71 -17.14 -0.18 1.80 16 30 N -0.54 -6.28 9.18 -12.96 -0.12 -6.40 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.15 1.46 7.73 -52.49 -0.41 1.05 16 38 H 0.40 4.40 4.72 -40.82 -0.19 4.21 16 39 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 43 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 46 H 0.05 0.68 6.51 -51.92 -0.34 0.35 16 47 H 0.02 0.33 7.61 -51.93 -0.40 -0.07 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.38 9.81 6.85 -40.82 -0.28 9.53 16 50 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.16 1.47 6.41 -52.49 -0.34 1.13 16 LS Contribution 407.40 15.07 6.14 6.14 Total: -1.00 -32.57 407.40 -9.42 -41.99 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -8.15 Total: 9.89 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.39 Total: -2.70 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.09 Total: -60.69 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.10 Total: -12.01 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.57 -9.42 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754343754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.095 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds