Wall clock time and date at job start Wed Apr 1 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.35501 * 116.99802 * 180.02562 * 3 2 1 5 5 C 1.39173 * 119.52795 * 179.73183 * 4 3 2 6 6 C 1.37953 * 119.26363 * 179.70372 * 5 4 3 7 7 C 1.40287 * 118.35755 * 0.55068 * 6 5 4 8 8 C 1.47613 * 120.49883 * 179.75266 * 7 6 5 9 9 O 1.21580 * 120.00136 * 359.97094 * 8 7 6 10 10 N 1.34770 * 119.99865 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99997 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46722 * 324.99538 * 11 10 8 13 13 C 1.52992 * 109.47229 * 84.99337 * 11 10 8 14 14 C 1.53007 * 109.47067 * 60.00307 * 13 11 10 15 15 C 1.52998 * 109.47073 * 59.99854 * 14 13 11 16 16 C 1.52999 * 109.47167 * 300.00234 * 15 14 13 17 17 C 1.52994 * 109.46883 * 204.99695 * 11 10 8 18 18 H 1.09007 * 109.47233 * 179.97438 * 17 11 10 19 19 C 1.53005 * 109.47641 * 59.99905 * 17 11 10 20 20 N 1.46494 * 109.47275 * 174.99872 * 19 17 11 21 21 C 1.36945 * 119.99831 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99481 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99906 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00161 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99906 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47456 * 89.99768 * 25 23 21 27 27 H 1.48504 * 109.46995 * 209.99814 * 25 23 21 28 28 H 1.48503 * 109.46936 * 329.99475 * 25 23 21 29 29 C 1.39528 * 119.00317 * 359.72747 * 7 6 5 30 30 N 1.31663 * 120.62423 * 359.97438 * 29 7 6 31 31 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 34 34 H 1.09001 * 109.46998 * 119.99473 * 2 1 3 35 35 H 1.09000 * 109.47050 * 239.99764 * 2 1 3 36 36 H 1.08000 * 120.36772 * 359.97223 * 5 4 3 37 37 H 1.07997 * 120.82067 * 180.27577 * 6 5 4 38 38 H 0.96996 * 120.00511 * 359.97438 * 10 8 7 39 39 H 1.09008 * 109.47059 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47525 * 299.99834 * 13 11 10 41 41 H 1.09005 * 109.46838 * 179.97438 * 14 13 11 42 42 H 1.08997 * 109.47015 * 299.99445 * 14 13 11 43 43 H 1.09008 * 109.47053 * 59.99992 * 15 14 13 44 44 H 1.09001 * 109.47159 * 179.97438 * 15 14 13 45 45 H 1.08999 * 109.47398 * 180.02562 * 16 15 14 46 46 H 1.09008 * 109.46937 * 299.99829 * 16 15 14 47 47 H 1.09000 * 109.46598 * 295.00144 * 19 17 11 48 48 H 1.09004 * 109.46987 * 54.99518 * 19 17 11 49 49 H 0.96997 * 120.00704 * 359.97438 * 20 19 17 50 50 H 0.97002 * 119.99526 * 180.02562 * 24 23 21 51 51 H 1.07994 * 119.68401 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8710 2.8151 -0.0062 6 6 5.2395 2.9896 -0.0005 7 6 6.0566 1.8493 -0.0010 8 6 7.5268 1.9811 -0.0005 9 8 8.0383 3.0841 -0.0003 10 7 8.3022 0.8788 -0.0005 11 6 9.7614 1.0096 0.0006 12 1 10.0484 1.8807 -0.5884 13 6 10.2572 1.1799 1.4379 14 6 9.8542 -0.0428 2.2646 15 6 10.4793 -1.2992 1.6550 16 6 9.9836 -1.4695 0.2176 17 6 10.3864 -0.2467 -0.6091 18 1 11.4721 -0.1493 -0.6087 19 6 9.8907 -0.4171 -2.0465 20 7 10.5792 -1.5502 -2.6695 21 6 10.2967 -1.8952 -3.9643 22 1 9.5660 -1.3321 -4.5259 23 6 10.9486 -2.9692 -4.5544 24 7 11.8388 -3.6557 -3.8697 25 14 10.5638 -3.4393 -6.3208 26 1 11.4716 -2.7043 -7.2378 27 1 10.7588 -4.9008 -6.4978 28 1 9.1550 -3.0867 -6.6312 29 6 5.4587 0.5886 -0.0014 30 7 4.1476 0.4681 -0.0008 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 3.2116 3.6704 -0.0107 37 1 5.6711 3.9796 -0.0003 38 1 7.8942 -0.0012 -0.0003 39 1 11.3429 1.2777 1.4386 40 1 9.8119 2.0750 1.8722 41 1 10.2078 0.0784 3.2886 42 1 8.7686 -0.1401 2.2640 43 1 11.5651 -1.2018 1.6557 44 1 10.1927 -2.1702 2.2443 45 1 10.4286 -2.3648 -0.2166 46 1 8.8979 -1.5669 0.2169 47 1 8.8167 -0.6031 -2.0407 48 1 10.0992 0.4907 -2.6127 49 1 11.2357 -2.0557 -2.1652 50 1 12.2946 -4.4060 -4.2823 51 1 6.0772 -0.2967 -0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754343754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:40 Heat of formation + Delta-G solvation = -65.924683 kcal Electronic energy + Delta-G solvation = -30812.495240 eV Core-core repulsion = 26710.789752 eV Total energy + Delta-G solvation = -4101.705489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.04259 -41.16876 -39.56434 -38.65521 -36.45196 -34.84624 -33.71800 -33.65041 -33.11160 -31.66469 -31.22575 -30.19967 -26.97370 -25.49796 -25.33328 -24.67615 -23.56179 -23.08538 -22.28135 -21.84065 -20.07508 -19.73774 -19.37568 -18.78888 -18.01509 -17.38953 -16.83260 -16.60463 -16.31111 -16.14892 -15.97873 -15.48556 -15.31365 -15.15381 -15.01050 -14.96362 -14.79258 -14.55806 -14.39588 -14.00877 -13.87638 -13.43684 -13.35239 -13.29567 -13.07928 -12.96201 -12.85234 -12.71811 -12.57218 -12.51827 -12.12253 -11.91324 -11.84229 -11.75611 -11.41884 -11.29093 -11.17250 -11.10493 -11.01083 -10.84312 -10.68542 -10.07611 -9.63765 -8.97945 -7.95107 -5.22904 -0.39709 0.09248 1.46688 1.47846 1.56128 1.78755 1.89712 2.12459 2.55437 2.73184 3.06870 3.38383 3.55830 3.65748 3.74992 3.80964 3.86143 3.93191 3.97763 4.07513 4.10479 4.18833 4.25800 4.43844 4.44728 4.49320 4.50258 4.53675 4.60203 4.63851 4.69672 4.75695 4.85576 4.92643 4.94548 5.00501 5.04338 5.10730 5.19151 5.20132 5.27132 5.28918 5.32794 5.36125 5.46956 5.48324 5.54429 5.61957 6.08450 6.27582 6.48065 6.59846 7.15581 7.34672 8.10414 8.34782 9.28114 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008023 B = 0.002923 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.254756 B = 9578.367183 C =11721.289081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.309 6.309 4 C 0.332 3.668 5 C -0.192 4.192 6 C 0.015 3.985 7 C -0.235 4.235 8 C 0.571 3.429 9 O -0.573 6.573 10 N -0.703 5.703 11 C 0.163 3.837 12 H 0.072 0.928 13 C -0.122 4.122 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.089 4.089 18 H 0.080 0.920 19 C 0.161 3.839 20 N -0.739 5.739 21 C -0.244 4.244 22 H 0.069 0.931 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.969 3.031 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.272 1.272 29 C 0.181 3.819 30 N -0.555 5.555 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.406 0.594 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.023 0.977 48 H 0.004 0.996 49 H 0.377 0.623 50 H 0.251 0.749 51 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.143 9.979 15.697 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.216 6.216 4 C 0.153 3.847 5 C -0.212 4.212 6 C -0.010 4.010 7 C -0.241 4.241 8 C 0.358 3.642 9 O -0.454 6.454 10 N -0.355 5.355 11 C 0.058 3.942 12 H 0.090 0.910 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.143 4.143 17 C -0.108 4.108 18 H 0.098 0.902 19 C 0.034 3.966 20 N -0.382 5.382 21 C -0.376 4.376 22 H 0.087 0.913 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.798 3.202 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.197 1.197 29 C 0.023 3.977 30 N -0.279 5.279 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.190 0.810 37 H 0.180 0.820 38 H 0.244 0.756 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.041 0.959 48 H 0.022 0.978 49 H 0.209 0.791 50 H 0.060 0.940 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -18.502 10.114 15.534 26.190 hybrid contribution 0.681 -0.483 -1.203 1.465 sum -17.820 9.631 14.331 24.813 Atomic orbital electron populations 1.21838 0.90911 1.04263 1.03491 1.22865 0.96388 0.79818 1.02557 1.86212 1.16337 1.32327 1.86681 1.20361 0.84477 0.90483 0.89343 1.21279 0.95536 0.96191 1.08235 1.21678 0.91756 0.99565 0.88001 1.20777 0.93805 0.95970 1.13500 1.18051 0.86382 0.84216 0.75509 1.90748 1.75642 1.26887 1.52153 1.45958 1.06889 1.08853 1.73818 1.20833 0.78830 0.97312 0.97225 0.91032 1.21851 1.01671 0.98764 0.93757 1.21459 1.00763 0.93447 0.98989 1.21534 1.00675 0.98322 0.94626 1.21463 1.00821 0.96682 0.95374 1.21467 1.00739 0.94935 0.93644 0.90200 1.20758 0.94954 0.89034 0.91853 1.42517 1.48785 1.34967 1.11971 1.19564 1.17777 1.09879 0.90378 0.91259 1.25482 0.99745 0.99024 1.02140 1.69798 1.30993 1.23015 1.37867 0.85211 0.77910 0.76709 0.80364 1.21639 1.21968 1.19664 1.22845 0.89293 0.96640 0.88918 1.67360 1.06484 1.33364 1.20674 0.91568 0.88446 0.91260 0.91408 0.91919 0.81018 0.82014 0.75582 0.90242 0.91979 0.90658 0.91840 0.91928 0.90930 0.93192 0.91737 0.95887 0.97757 0.79068 0.93976 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.06 0.91 6.02 71.98 0.43 1.34 16 3 O -0.31 -5.96 10.10 -88.02 -0.89 -6.84 16 4 C 0.33 6.92 7.49 84.83 0.64 7.55 16 5 C -0.19 -3.39 10.02 22.43 0.22 -3.17 16 6 C 0.02 0.30 9.70 22.70 0.22 0.52 16 7 C -0.23 -5.23 5.89 -19.99 -0.12 -5.34 16 8 C 0.57 14.90 7.74 86.72 0.67 15.57 16 9 O -0.57 -18.49 16.08 -3.97 -0.06 -18.55 16 10 N -0.70 -16.71 3.57 -445.64 -1.59 -18.30 16 11 C 0.16 4.22 2.23 44.99 0.10 4.32 16 12 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 13 C -0.12 -2.63 5.60 30.59 0.17 -2.46 16 14 C -0.11 -2.02 5.77 30.60 0.18 -1.84 16 15 C -0.11 -2.39 5.92 30.59 0.18 -2.21 16 16 C -0.11 -2.84 4.90 30.59 0.15 -2.69 16 17 C -0.09 -2.64 2.02 -10.80 -0.02 -2.66 16 18 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 19 C 0.16 6.27 5.42 86.38 0.47 6.74 16 20 N -0.74 -36.80 5.33 -343.45 -1.83 -38.63 16 21 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 22 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 24 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 25 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 29 C 0.18 3.75 10.71 85.03 0.91 4.66 16 30 N -0.55 -12.29 9.18 -307.81 -2.82 -15.12 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 36 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.16 2.89 7.73 -2.91 -0.02 2.86 16 38 H 0.41 8.46 4.72 -92.71 -0.44 8.02 16 39 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.06 1.13 7.60 -2.39 -0.02 1.12 16 43 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.67 7.18 -2.39 -0.02 1.65 16 46 H 0.06 1.57 6.51 -2.38 -0.02 1.55 16 47 H 0.02 0.88 7.61 -2.39 -0.02 0.87 16 48 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 49 H 0.38 19.72 6.85 -92.71 -0.64 19.08 16 50 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.18 2.96 6.41 -2.91 -0.02 2.94 16 Total: -1.00 -69.72 407.40 1.23 -68.49 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.13 Total: 35.71 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 6.25 Total: 3.19 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -5.96 Total: -130.24 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.95 Total: -25.40 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -69.72 1.23 -68.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754343754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.566 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds