Wall clock time and date at job start Wed Apr 1 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35897 * 116.99396 * 2 1 4 4 C 1.38751 * 120.05956 * 0.26113 * 3 2 1 5 5 C 1.38124 * 119.94392 * 180.20503 * 4 3 2 6 6 C 1.38294 * 120.05368 * 359.51244 * 5 4 3 7 7 C 1.38242 * 120.11425 * 0.27577 * 6 5 4 8 8 C 1.50692 * 119.97382 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47087 * 22.65757 * 8 7 6 10 10 C 1.53007 * 109.47024 * 142.65460 * 8 7 6 11 11 N 1.46500 * 109.47005 * 175.00285 * 10 8 7 12 12 C 1.34774 * 119.99705 * 179.97438 * 11 10 8 13 13 O 1.21585 * 120.00431 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99652 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99769 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47141 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00047 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99959 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00202 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99892 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47504 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47029 * 120.00277 * 20 18 16 23 23 H 1.48501 * 109.47296 * 239.99989 * 20 18 16 24 24 N 1.46897 * 109.47568 * 262.65523 * 8 7 6 25 25 C 1.48539 * 111.00066 * 307.61939 * 24 8 7 26 26 C 1.54934 * 103.22765 * 159.71942 * 25 24 8 27 27 C 1.54595 * 102.92300 * 322.58476 * 26 25 24 28 28 C 1.47902 * 111.00102 * 65.01108 * 24 8 7 29 29 C 1.38164 * 120.05487 * 359.95781 * 7 6 5 30 30 H 1.08995 * 109.46929 * 59.99961 * 1 2 3 31 31 H 1.08999 * 109.46677 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46898 * 299.99576 * 1 2 3 33 33 H 1.07997 * 120.03172 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.97444 * 179.79121 * 5 4 3 35 35 H 1.08007 * 119.93988 * 180.25464 * 6 5 4 36 36 H 1.09002 * 109.46957 * 295.00106 * 10 8 7 37 37 H 1.08991 * 109.47025 * 55.00158 * 10 8 7 38 38 H 0.97002 * 119.99926 * 359.97438 * 11 10 8 39 39 H 0.96993 * 120.00266 * 0.02562 * 14 12 11 40 40 H 1.08995 * 109.47403 * 300.00398 * 15 14 12 41 41 H 1.09001 * 109.47245 * 60.00440 * 15 14 12 42 42 H 0.96991 * 119.99941 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.66663 * 278.16020 * 25 24 8 44 44 H 1.09005 * 110.66280 * 41.28330 * 25 24 8 45 45 H 1.08999 * 110.72203 * 204.22869 * 26 25 24 46 46 H 1.09002 * 110.72385 * 80.94539 * 26 25 24 47 47 H 1.08999 * 110.30894 * 263.04711 * 27 26 25 48 48 H 1.08999 * 110.31011 * 140.87429 * 27 26 25 49 49 H 1.08996 * 109.91560 * 333.51833 * 28 24 8 50 50 H 1.09001 * 109.91510 * 94.80599 * 28 24 8 51 51 H 1.07993 * 120.03335 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0055 5 6 1.9207 3.6048 0.0012 6 6 3.3018 3.6758 0.0016 7 6 4.0560 2.5172 0.0006 8 6 5.5607 2.5983 0.0005 9 1 5.8725 3.5645 0.3971 10 6 6.1318 1.4799 0.8746 11 7 7.5937 1.4843 0.7799 12 6 8.3164 0.5805 1.4707 13 8 7.7552 -0.2388 2.1721 14 7 9.6614 0.5842 1.3831 15 6 10.4470 -0.3979 2.1344 16 6 11.9137 -0.1798 1.8652 17 1 12.2291 0.6114 1.2013 18 6 12.8529 -0.9905 2.4666 19 7 12.4689 -1.9544 3.2747 20 14 14.6709 -0.7207 2.1324 21 1 14.8381 0.4186 1.1946 22 1 15.3690 -0.4180 3.4077 23 1 15.2509 -1.9477 1.5298 24 7 6.0591 2.4490 -1.3732 25 6 5.5034 1.2282 -2.0114 26 6 5.6822 1.5067 -3.5250 27 6 5.3868 3.0202 -3.6353 28 6 5.6243 3.5804 -2.2208 29 6 3.4312 1.2849 0.0000 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3204 0.0093 34 1 1.3338 4.5114 0.0020 35 1 3.7921 4.6382 0.0024 36 1 5.8344 1.6409 1.9108 37 1 5.7484 0.5191 0.5316 38 1 8.0415 2.1377 0.2200 39 1 10.1091 1.2376 0.8232 40 1 10.2522 -0.2803 3.2003 41 1 10.1657 -1.4037 1.8224 42 1 13.1296 -2.5249 3.6975 43 1 6.0700 0.3462 -1.7129 44 1 4.4484 1.1110 -1.7637 45 1 4.9660 0.9302 -4.1104 46 1 6.7030 1.2890 -3.8393 47 1 4.3523 3.1826 -3.9377 48 1 6.0676 3.4876 -4.3467 49 1 4.6996 4.0040 -1.8289 50 1 6.4024 4.3433 -2.2494 51 1 4.0206 0.3800 -0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426410307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:15 Heat of formation + Delta-G solvation = -30.053843 kcal Electronic energy + Delta-G solvation = -30892.671601 eV Core-core repulsion = 26792.521588 eV Total energy + Delta-G solvation = -4100.150012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.04142 -39.58793 -38.76789 -37.37091 -35.09348 -33.93196 -32.74839 -32.05178 -31.19669 -30.02339 -29.04898 -28.07446 -27.52511 -26.46576 -24.03323 -22.76842 -22.03892 -22.02849 -20.91003 -20.16916 -19.95952 -18.27795 -17.64794 -16.82280 -16.54325 -16.24907 -16.08382 -16.00441 -15.78979 -15.42925 -14.89997 -14.51422 -14.45101 -14.17003 -14.02677 -13.81297 -13.47140 -13.17970 -13.02437 -12.85381 -12.72136 -12.53764 -12.31144 -12.02879 -11.87930 -11.78606 -11.55609 -11.48334 -11.37969 -11.30025 -11.19520 -10.95476 -10.84861 -10.83085 -10.70860 -10.22555 -9.28551 -9.26306 -9.13239 -8.69008 -8.64731 -8.49249 -8.43855 -7.60406 -6.07800 -4.13520 0.93313 1.11898 2.93040 3.29262 3.33160 3.36336 3.39471 3.55202 3.85169 4.13465 4.34519 4.40854 4.42901 4.49635 4.52902 4.69690 4.73959 4.77582 4.79181 4.89141 4.96294 5.10035 5.13372 5.15985 5.18669 5.27606 5.28275 5.36531 5.38395 5.52815 5.61471 5.67862 5.68580 5.83811 5.84693 5.93322 5.94286 5.98617 6.01993 6.09948 6.23950 6.38612 6.70458 6.76646 7.07272 7.09441 7.28765 7.64713 7.68116 7.69338 8.03862 8.18440 8.87415 9.10924 9.45858 9.61749 11.02628 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.002284 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.256144 B =12258.701788 C =13235.707422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.127 3.873 4 C -0.207 4.207 5 C -0.082 4.082 6 C -0.144 4.144 7 C -0.073 4.073 8 C 0.102 3.898 9 H 0.100 0.900 10 C 0.155 3.845 11 N -0.746 5.746 12 C 0.693 3.307 13 O -0.606 6.606 14 N -0.730 5.730 15 C 0.267 3.733 16 C -0.538 4.538 17 H 0.063 0.937 18 C 0.062 3.938 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 N -0.495 5.495 25 C 0.017 3.983 26 C -0.122 4.122 27 C -0.128 4.128 28 C 0.027 3.973 29 C -0.136 4.136 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.386 0.614 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.264 0.736 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.053 0.947 50 H 0.079 0.921 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.323 13.492 -13.355 31.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.082 3.918 4 C -0.226 4.226 5 C -0.100 4.100 6 C -0.163 4.163 7 C -0.075 4.075 8 C -0.007 4.007 9 H 0.118 0.882 10 C 0.029 3.971 11 N -0.403 5.403 12 C 0.392 3.608 13 O -0.486 6.486 14 N -0.382 5.382 15 C 0.146 3.854 16 C -0.577 4.577 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.524 5.524 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 N -0.217 5.217 25 C -0.111 4.111 26 C -0.161 4.161 27 C -0.166 4.166 28 C -0.101 4.101 29 C -0.155 4.155 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.232 0.768 39 H 0.218 0.782 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.053 12.329 -12.521 30.601 hybrid contribution 0.133 0.879 -0.630 1.089 sum -24.920 13.208 -13.151 31.119 Atomic orbital electron populations 1.23063 0.78368 1.04086 1.01210 1.86118 1.21372 1.26782 1.88555 1.19015 0.92242 0.84265 0.96291 1.21246 0.99987 0.92449 1.08905 1.20899 0.94476 0.96966 0.97633 1.20953 0.93734 0.97763 1.03805 1.20143 0.96414 0.92576 0.98373 1.21153 0.87736 1.00905 0.90897 0.88216 1.21036 0.80445 0.97161 0.98425 1.44908 1.05741 1.37450 1.52222 1.16150 0.82437 0.81542 0.80659 1.90862 1.70948 1.41596 1.45192 1.45669 1.03599 1.37892 1.51089 1.18944 0.88520 0.86698 0.91231 1.21287 0.90633 1.16866 1.28875 0.91911 1.24951 0.99472 0.94870 0.94849 1.69994 1.34232 1.18602 1.29578 0.86372 0.84412 0.78097 0.78064 1.19672 1.20887 1.20872 1.65156 1.53481 1.02676 1.00401 1.23625 0.99713 0.94035 0.93685 1.22451 1.02255 0.95493 0.95851 1.22351 1.01291 0.96250 0.96757 1.22972 0.99960 0.94469 0.92709 1.20477 0.91439 0.98656 1.04934 0.92762 0.88121 0.92617 0.85577 0.85761 0.85797 0.91474 0.91881 0.76777 0.78185 0.95875 0.95855 0.92610 0.89619 0.91831 0.91355 0.90674 0.91913 0.91146 0.92832 0.90289 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.28 10.50 -19.42 -0.20 -3.48 16 3 C 0.13 1.33 6.69 -39.21 -0.26 1.06 16 4 C -0.21 -1.75 9.04 -39.43 -0.36 -2.11 16 5 C -0.08 -0.64 10.04 -39.60 -0.40 -1.03 16 6 C -0.14 -1.21 8.02 -39.56 -0.32 -1.53 16 7 C -0.07 -0.72 3.87 -104.65 -0.40 -1.12 16 8 C 0.10 1.05 2.22 -68.87 -0.15 0.90 16 9 H 0.10 0.95 8.02 -51.93 -0.42 0.53 16 10 C 0.16 2.16 4.59 -4.04 -0.02 2.14 16 11 N -0.75 -11.86 5.39 -65.22 -0.35 -12.22 16 12 C 0.69 15.01 8.57 -86.92 -0.74 14.26 16 13 O -0.61 -15.83 16.34 5.29 0.09 -15.74 16 14 N -0.73 -16.38 5.55 -66.41 -0.37 -16.75 16 15 C 0.27 7.41 5.43 -5.19 -0.03 7.38 16 16 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 17 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 20 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 N -0.49 -4.99 4.71 -223.89 -1.05 -6.04 16 25 C 0.02 0.17 5.07 -1.90 -0.01 0.16 16 26 C -0.12 -1.10 7.06 -24.87 -0.18 -1.28 16 27 C -0.13 -1.01 6.93 -25.38 -0.18 -1.19 16 28 C 0.03 0.22 6.47 -2.76 -0.02 0.21 16 29 C -0.14 -1.50 6.60 -39.43 -0.26 -1.76 16 30 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 33 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.12 0.85 7.80 -52.48 -0.41 0.44 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.95 5.55 -51.93 -0.29 0.66 16 38 H 0.40 5.45 8.15 -40.82 -0.33 5.12 16 39 H 0.39 7.50 8.33 -40.82 -0.34 7.16 16 40 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 44 H 0.06 0.68 4.39 -51.93 -0.23 0.45 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.43 5.24 -51.93 -0.27 0.16 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.14 1.65 5.72 -52.49 -0.30 1.35 16 LS Contribution 401.70 15.07 6.05 6.05 Total: -1.00 -34.57 401.70 -10.75 -45.33 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.88 Total: 9.02 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.75 Total: 3.55 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -1.04 Total: -61.04 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.12 Total: -19.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.57 -10.75 -45.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426410307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.273 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds