Wall clock time and date at job start Wed Apr 1 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35897 * 116.99396 * 2 1 4 4 C 1.38751 * 120.05956 * 0.26113 * 3 2 1 5 5 C 1.38124 * 119.94392 * 180.20503 * 4 3 2 6 6 C 1.38294 * 120.05368 * 359.51244 * 5 4 3 7 7 C 1.38242 * 120.11425 * 0.27577 * 6 5 4 8 8 C 1.50692 * 119.97382 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47087 * 22.65757 * 8 7 6 10 10 C 1.53007 * 109.47024 * 142.65460 * 8 7 6 11 11 N 1.46500 * 109.47005 * 175.00285 * 10 8 7 12 12 C 1.34774 * 119.99705 * 179.97438 * 11 10 8 13 13 O 1.21585 * 120.00431 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99652 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99769 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47141 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00047 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99959 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00202 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99892 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47504 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47029 * 120.00277 * 20 18 16 23 23 H 1.48501 * 109.47296 * 239.99989 * 20 18 16 24 24 N 1.46897 * 109.47568 * 262.65523 * 8 7 6 25 25 C 1.48539 * 111.00066 * 307.61939 * 24 8 7 26 26 C 1.54934 * 103.22765 * 159.71942 * 25 24 8 27 27 C 1.54595 * 102.92300 * 322.58476 * 26 25 24 28 28 C 1.47902 * 111.00102 * 65.01108 * 24 8 7 29 29 C 1.38164 * 120.05487 * 359.95781 * 7 6 5 30 30 H 1.08995 * 109.46929 * 59.99961 * 1 2 3 31 31 H 1.08999 * 109.46677 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46898 * 299.99576 * 1 2 3 33 33 H 1.07997 * 120.03172 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.97444 * 179.79121 * 5 4 3 35 35 H 1.08007 * 119.93988 * 180.25464 * 6 5 4 36 36 H 1.09002 * 109.46957 * 295.00106 * 10 8 7 37 37 H 1.08991 * 109.47025 * 55.00158 * 10 8 7 38 38 H 0.97002 * 119.99926 * 359.97438 * 11 10 8 39 39 H 0.96993 * 120.00266 * 0.02562 * 14 12 11 40 40 H 1.08995 * 109.47403 * 300.00398 * 15 14 12 41 41 H 1.09001 * 109.47245 * 60.00440 * 15 14 12 42 42 H 0.96991 * 119.99941 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.66663 * 278.16020 * 25 24 8 44 44 H 1.09005 * 110.66280 * 41.28330 * 25 24 8 45 45 H 1.08999 * 110.72203 * 204.22869 * 26 25 24 46 46 H 1.09002 * 110.72385 * 80.94539 * 26 25 24 47 47 H 1.08999 * 110.30894 * 263.04711 * 27 26 25 48 48 H 1.08999 * 110.31011 * 140.87429 * 27 26 25 49 49 H 1.08996 * 109.91560 * 333.51833 * 28 24 8 50 50 H 1.09001 * 109.91510 * 94.80599 * 28 24 8 51 51 H 1.07993 * 120.03335 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0055 5 6 1.9207 3.6048 0.0012 6 6 3.3018 3.6758 0.0016 7 6 4.0560 2.5172 0.0006 8 6 5.5607 2.5983 0.0005 9 1 5.8725 3.5645 0.3971 10 6 6.1318 1.4799 0.8746 11 7 7.5937 1.4843 0.7799 12 6 8.3164 0.5805 1.4707 13 8 7.7552 -0.2388 2.1721 14 7 9.6614 0.5842 1.3831 15 6 10.4470 -0.3979 2.1344 16 6 11.9137 -0.1798 1.8652 17 1 12.2291 0.6114 1.2013 18 6 12.8529 -0.9905 2.4666 19 7 12.4689 -1.9544 3.2747 20 14 14.6709 -0.7207 2.1324 21 1 14.8381 0.4186 1.1946 22 1 15.3690 -0.4180 3.4077 23 1 15.2509 -1.9477 1.5298 24 7 6.0591 2.4490 -1.3732 25 6 5.5034 1.2282 -2.0114 26 6 5.6822 1.5067 -3.5250 27 6 5.3868 3.0202 -3.6353 28 6 5.6243 3.5804 -2.2208 29 6 3.4312 1.2849 0.0000 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3204 0.0093 34 1 1.3338 4.5114 0.0020 35 1 3.7921 4.6382 0.0024 36 1 5.8344 1.6409 1.9108 37 1 5.7484 0.5191 0.5316 38 1 8.0415 2.1377 0.2200 39 1 10.1091 1.2376 0.8232 40 1 10.2522 -0.2803 3.2003 41 1 10.1657 -1.4037 1.8224 42 1 13.1296 -2.5249 3.6975 43 1 6.0700 0.3462 -1.7129 44 1 4.4484 1.1110 -1.7637 45 1 4.9660 0.9302 -4.1104 46 1 6.7030 1.2890 -3.8393 47 1 4.3523 3.1826 -3.9377 48 1 6.0676 3.4876 -4.3467 49 1 4.6996 4.0040 -1.8289 50 1 6.4024 4.3433 -2.2494 51 1 4.0206 0.3800 -0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426410307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:14 Heat of formation + Delta-G solvation = -55.724574 kcal Electronic energy + Delta-G solvation = -30893.784767 eV Core-core repulsion = 26792.521588 eV Total energy + Delta-G solvation = -4101.263179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.82801 -40.76613 -40.07717 -38.05354 -36.45759 -35.85911 -34.40406 -33.64489 -31.88793 -30.73063 -29.89721 -29.50923 -28.33789 -27.83758 -25.14658 -24.34353 -23.15279 -22.78744 -21.73910 -21.59274 -20.99987 -19.80816 -18.67862 -18.04109 -17.59129 -17.46410 -16.96699 -16.86991 -16.81616 -16.58629 -16.42387 -16.20606 -15.52178 -15.25362 -14.98642 -14.68731 -14.61384 -14.52623 -14.29999 -14.01001 -13.89461 -13.69946 -13.48665 -13.19607 -12.91305 -12.84188 -12.73519 -12.67164 -12.41191 -12.26258 -12.19496 -12.05501 -12.03170 -11.94607 -11.74155 -11.42201 -11.39009 -11.21786 -10.79431 -10.21243 -9.85639 -9.53604 -9.40180 -9.15809 -8.26284 -6.42488 0.23543 0.43192 1.44522 1.46461 1.59826 1.93902 2.30818 2.33920 2.41669 2.69639 3.01747 3.08540 3.48070 3.64737 3.73249 3.83225 3.84932 3.98471 4.10530 4.15676 4.19859 4.26329 4.33878 4.35935 4.44381 4.49153 4.59051 4.61768 4.69567 4.69921 4.82266 4.86848 4.95269 4.98733 4.99746 5.11090 5.11869 5.20612 5.28709 5.29832 5.33989 5.42943 5.51690 5.52699 5.58463 5.72469 5.75824 5.88353 5.91942 6.01998 6.35771 6.42953 6.69907 7.26977 7.39328 7.79161 8.86544 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.002284 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.256144 B =12258.701788 C =13235.707422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.110 3.890 4 C -0.205 4.205 5 C -0.077 4.077 6 C -0.142 4.142 7 C -0.078 4.078 8 C 0.116 3.884 9 H 0.119 0.881 10 C 0.155 3.845 11 N -0.717 5.717 12 C 0.690 3.310 13 O -0.654 6.654 14 N -0.723 5.723 15 C 0.286 3.714 16 C -0.552 4.552 17 H 0.084 0.916 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.988 3.012 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.279 1.279 24 N -0.503 5.503 25 C 0.017 3.983 26 C -0.121 4.121 27 C -0.123 4.123 28 C 0.027 3.973 29 C -0.158 4.158 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.414 0.586 39 H 0.404 0.596 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.268 0.732 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.666 16.981 -15.187 34.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C 0.065 3.935 4 C -0.224 4.224 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.081 4.081 8 C 0.007 3.993 9 H 0.137 0.863 10 C 0.030 3.970 11 N -0.375 5.375 12 C 0.390 3.610 13 O -0.538 6.538 14 N -0.377 5.377 15 C 0.163 3.837 16 C -0.590 4.590 17 H 0.102 0.898 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.811 3.189 21 H -0.176 1.176 22 H -0.204 1.204 23 H -0.205 1.205 24 N -0.226 5.226 25 C -0.110 4.110 26 C -0.160 4.160 27 C -0.161 4.161 28 C -0.100 4.100 29 C -0.178 4.178 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.165 0.835 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.251 0.749 39 H 0.239 0.761 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.081 0.919 50 H 0.108 0.892 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.429 15.893 -14.415 33.272 hybrid contribution 0.080 -0.246 -0.051 0.264 sum -25.348 15.647 -14.466 33.116 Atomic orbital electron populations 1.23327 0.76352 1.05402 1.02375 1.86078 1.23632 1.27378 1.88742 1.19195 0.92206 0.85095 0.96988 1.21543 1.01121 0.91934 1.07810 1.21292 0.94463 0.97783 0.95975 1.21209 0.94178 0.97850 1.02824 1.20062 0.95877 0.92843 0.99299 1.20984 0.88168 0.99645 0.90527 0.86348 1.21137 0.78743 0.98298 0.98826 1.44654 1.06444 1.35807 1.50549 1.16327 0.82222 0.81836 0.80632 1.90829 1.71766 1.43799 1.47392 1.45264 1.03840 1.37505 1.51068 1.18388 0.89854 0.86004 0.89460 1.21632 0.90403 1.17586 1.29350 0.89816 1.26096 1.05331 0.94177 0.94171 1.70159 1.36408 1.19778 1.30738 0.85073 0.76982 0.78594 0.78300 1.17605 1.20385 1.20454 1.65125 1.53758 1.03213 1.00473 1.23524 0.99091 0.93431 0.94969 1.22439 1.02054 0.96913 0.94546 1.22342 1.02106 0.94877 0.96778 1.23047 1.00748 0.93762 0.92461 1.20414 0.92082 0.98385 1.06877 0.91280 0.86932 0.91608 0.83336 0.82643 0.83506 0.92597 0.93603 0.74920 0.76062 0.99770 0.99932 0.92273 0.92510 0.92030 0.90735 0.91382 0.91062 0.90096 0.91910 0.89199 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.38 10.50 -92.40 -0.97 -8.35 16 3 C 0.11 2.30 6.69 22.51 0.15 2.45 16 4 C -0.21 -3.05 9.04 22.37 0.20 -2.85 16 5 C -0.08 -0.95 10.04 22.26 0.22 -0.73 16 6 C -0.14 -2.00 8.02 22.28 0.18 -1.82 16 7 C -0.08 -1.49 3.87 -19.88 -0.08 -1.57 16 8 C 0.12 2.30 2.22 44.17 0.10 2.40 16 9 H 0.12 1.95 8.02 -2.39 -0.02 1.93 16 10 C 0.16 4.50 4.59 86.38 0.40 4.89 16 11 N -0.72 -23.23 5.39 -478.54 -2.58 -25.81 16 12 C 0.69 31.12 8.57 179.05 1.53 32.66 16 13 O -0.65 -36.28 16.34 -3.98 -0.07 -36.34 16 14 N -0.72 -33.32 5.55 -482.30 -2.68 -36.00 16 15 C 0.29 16.63 5.43 85.63 0.46 17.10 16 16 C -0.55 -31.13 9.28 25.60 0.24 -30.89 16 17 H 0.08 4.28 7.60 -2.91 -0.02 4.26 16 18 C 0.00 0.09 5.46 84.65 0.46 0.55 16 19 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 20 Si 0.99 43.42 29.54 68.60 2.03 45.45 16 21 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 N -0.50 -9.66 4.71 -862.24 -4.06 -13.72 16 25 C 0.02 0.38 5.07 86.65 0.44 0.81 16 26 C -0.12 -2.11 7.06 31.80 0.22 -1.89 16 27 C -0.12 -1.66 6.93 31.47 0.22 -1.44 16 28 C 0.03 0.38 6.47 86.45 0.56 0.94 16 29 C -0.16 -3.65 6.60 22.37 0.15 -3.50 16 30 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 33 H 0.15 1.44 6.30 -2.91 -0.02 1.43 16 34 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.15 1.38 7.80 -2.91 -0.02 1.36 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.52 5.55 -2.39 -0.01 1.50 16 38 H 0.41 10.96 8.15 -92.71 -0.76 10.21 16 39 H 0.40 15.53 8.33 -92.71 -0.77 14.76 16 40 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 41 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.06 1.52 7.85 -2.39 -0.02 1.51 16 44 H 0.06 1.38 4.39 -2.38 -0.01 1.37 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.06 0.79 5.24 -2.39 -0.01 0.78 16 50 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.11 3.05 5.72 -2.91 -0.02 3.04 16 Total: -1.00 -79.33 401.70 -2.04 -81.37 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.57 Total: 32.49 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 6.57 Total: 18.45 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -9.03 Total: -133.07 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -1.03 Total: -44.70 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -79.33 -2.04 -81.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426410307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.644 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds