Wall clock time and date at job start Wed Apr 1 2020 05:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35901 * 117.00410 * 2 1 4 4 C 1.38763 * 120.05197 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94227 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05780 * 359.71613 * 5 4 3 7 7 C 1.38251 * 120.10941 * 0.55557 * 6 5 4 8 8 C 1.38164 * 120.05432 * 359.45174 * 7 6 5 9 9 C 1.50693 * 120.02595 * 180.25398 * 8 7 6 10 10 C 1.53003 * 109.46884 * 264.99358 * 9 8 7 11 11 N 1.46506 * 109.47029 * 179.97438 * 10 9 8 12 12 C 1.34782 * 119.99832 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99811 * 354.91618 * 12 11 10 14 14 N 1.34776 * 119.99609 * 174.92109 * 12 11 10 15 15 C 1.47084 * 120.87684 * 184.71761 * 14 12 11 16 16 C 1.53691 * 108.27416 * 128.75555 * 15 14 12 17 17 N 1.46899 * 109.25899 * 54.08322 * 16 15 14 18 18 C 1.46899 * 111.00273 * 172.60664 * 17 16 15 19 19 C 1.50710 * 109.46966 * 294.30145 * 18 17 16 20 20 H 1.08000 * 119.99615 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00458 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47051 * 89.99900 * 23 21 19 25 25 H 1.48499 * 109.47226 * 210.00607 * 23 21 19 26 26 H 1.48507 * 109.46728 * 330.00448 * 23 21 19 27 27 C 1.46898 * 111.26775 * 296.75530 * 17 16 15 28 28 C 1.47077 * 120.88267 * 4.99624 * 14 12 11 29 29 H 1.09006 * 109.46942 * 299.99692 * 1 2 3 30 30 H 1.08998 * 109.47376 * 59.99838 * 1 2 3 31 31 H 1.08993 * 109.47437 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.02786 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.97046 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.94606 * 180.30093 * 6 5 4 35 35 H 1.08000 * 119.96825 * 179.71769 * 7 6 5 36 36 H 1.08995 * 109.47619 * 24.99371 * 9 8 7 37 37 H 1.08997 * 109.47594 * 144.99796 * 9 8 7 38 38 H 1.09000 * 109.47023 * 299.99936 * 10 9 8 39 39 H 1.09004 * 109.47193 * 60.00268 * 10 9 8 40 40 H 0.96996 * 120.00207 * 0.02562 * 11 10 9 41 41 H 1.09004 * 109.62337 * 248.52461 * 15 14 12 42 42 H 1.09000 * 109.62643 * 9.09858 * 15 14 12 43 43 H 1.09000 * 109.64989 * 294.07309 * 16 15 14 44 44 H 1.09007 * 109.41532 * 173.94465 * 16 15 14 45 45 H 1.09000 * 109.46853 * 54.29894 * 18 17 16 46 46 H 1.08991 * 109.47284 * 174.29983 * 18 17 16 47 47 H 0.97000 * 120.00622 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.49021 * 303.14503 * 27 17 16 49 49 H 1.09001 * 109.49510 * 183.06217 * 27 17 16 50 50 H 1.08995 * 109.62887 * 350.89791 * 28 14 12 51 51 H 1.09000 * 109.62732 * 111.48104 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 0.0049 7 6 4.0560 2.5170 -0.0003 8 6 3.4311 1.2848 0.0001 9 6 4.2537 0.0222 0.0003 10 6 4.4264 -0.4742 -1.4366 11 7 5.2266 -1.7014 -1.4365 12 6 5.5095 -2.3215 -2.5993 13 8 5.0248 -1.9161 -3.6380 14 7 6.3296 -3.3910 -2.6104 15 6 6.7334 -4.0193 -3.8775 16 6 8.2652 -4.1445 -3.8866 17 7 8.7007 -4.8534 -2.6759 18 6 10.1386 -5.1494 -2.7276 19 6 10.4105 -6.1271 -3.8418 20 1 9.5964 -6.4923 -4.4503 21 6 11.6985 -6.5551 -4.0842 22 7 12.6897 -6.1108 -3.3429 23 14 12.0355 -7.7675 -5.4648 24 1 12.3113 -7.0239 -6.7202 25 1 13.2131 -8.6017 -5.1146 26 1 10.8498 -8.6408 -5.6571 27 6 8.3624 -4.0954 -1.4639 28 6 6.8395 -3.9644 -1.3557 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2128 2.3204 -0.0014 33 1 1.3340 4.5113 -0.0019 34 1 3.7922 4.6381 0.0093 35 1 5.1344 2.5752 -0.0002 36 1 5.2325 0.2262 0.4343 37 1 3.7469 -0.7417 0.5900 38 1 3.4476 -0.6783 -1.8706 39 1 4.9333 0.2896 -2.0264 40 1 5.5529 -2.0676 -0.5997 41 1 6.2816 -5.0082 -3.9560 42 1 6.4103 -3.3987 -4.7133 43 1 8.7140 -3.1514 -3.9079 44 1 8.5778 -4.7043 -4.7682 45 1 10.6928 -4.2284 -2.9090 46 1 10.4547 -5.5827 -1.7788 47 1 13.5958 -6.4122 -3.5132 48 1 8.8098 -3.1030 -1.5189 49 1 8.7455 -4.6196 -0.5883 50 1 6.5866 -3.3075 -0.5235 51 1 6.3978 -4.9482 -1.1966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601542043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:08 Heat of formation + Delta-G solvation = -26.276675 kcal Electronic energy + Delta-G solvation = -29977.427147 eV Core-core repulsion = 25877.440925 eV Total energy + Delta-G solvation = -4099.986222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.67547 -40.09527 -37.87056 -37.60003 -35.55562 -34.35841 -32.94846 -32.30661 -30.68724 -30.48582 -29.01394 -27.93933 -27.45139 -25.45572 -23.97962 -22.98085 -22.50148 -22.07537 -21.48011 -20.66926 -19.24183 -18.34057 -17.83905 -16.72119 -16.51477 -16.27928 -16.03096 -15.80577 -15.56018 -14.93298 -14.80968 -14.55597 -14.44246 -14.33434 -13.95581 -13.92289 -13.67369 -13.46453 -13.31332 -13.13537 -12.81342 -12.38562 -12.23068 -12.07866 -11.98163 -11.91983 -11.51162 -11.35000 -11.26821 -11.17289 -11.10196 -10.80681 -10.72580 -10.59618 -10.48310 -9.94535 -9.82211 -9.25925 -9.23239 -9.06563 -8.50974 -8.47087 -8.26753 -7.30027 -6.04918 -4.06581 0.92449 1.07499 2.78875 2.90643 3.31591 3.37870 3.38286 3.38631 3.42192 3.96356 4.38030 4.40703 4.41600 4.65089 4.70655 4.75823 4.80581 4.86968 4.89146 4.97686 5.10899 5.11956 5.22306 5.25496 5.30270 5.38955 5.40657 5.47076 5.62022 5.68901 5.72751 5.85005 5.88312 5.95385 6.01322 6.07884 6.09926 6.18601 6.22465 6.40678 6.45672 6.52374 6.59403 6.73949 7.00928 7.12010 7.24021 7.30177 7.76099 8.02579 8.07577 8.15034 8.49527 8.75577 9.00812 9.58000 11.05883 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025472 B = 0.001735 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.971163 B =16137.322667 C =16510.725807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.133 3.867 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.156 4.156 7 C -0.075 4.075 8 C -0.111 4.111 9 C -0.083 4.083 10 C 0.148 3.852 11 N -0.751 5.751 12 C 0.707 3.293 13 O -0.597 6.597 14 N -0.626 5.626 15 C 0.133 3.867 16 C 0.051 3.949 17 N -0.535 5.535 18 C 0.193 3.807 19 C -0.509 4.509 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.272 1.272 27 C 0.041 3.959 28 C 0.119 3.881 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.395 0.605 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.024 0.976 44 H 0.097 0.903 45 H -0.009 1.009 46 H 0.031 0.969 47 H 0.261 0.739 48 H 0.026 0.974 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.229 17.364 11.415 31.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.088 3.912 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.174 4.174 7 C -0.093 4.093 8 C -0.113 4.113 9 C -0.120 4.120 10 C 0.024 3.976 11 N -0.409 5.409 12 C 0.409 3.591 13 O -0.476 6.476 14 N -0.363 5.363 15 C 0.011 3.989 16 C -0.078 4.078 17 N -0.260 5.260 18 C 0.069 3.931 19 C -0.547 4.547 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.089 4.089 28 C -0.005 4.005 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.043 0.957 44 H 0.115 0.885 45 H 0.009 0.991 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.098 0.902 50 H 0.087 0.913 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.548 17.004 10.684 30.948 hybrid contribution 0.698 0.165 -0.201 0.745 sum -22.849 17.169 10.483 30.443 Atomic orbital electron populations 1.23073 0.78338 1.04147 1.01245 1.86105 1.21338 1.26616 1.88380 1.18875 0.91775 0.84375 0.96192 1.21233 1.00041 0.92387 1.09083 1.20949 0.94753 0.96952 0.97441 1.21068 0.93915 0.98481 1.03978 1.20969 1.00132 0.90975 0.97228 1.19013 0.90357 0.95443 1.06438 1.20593 0.99612 0.94864 0.96961 1.21070 0.95622 0.85228 0.95727 1.45253 1.58871 1.28726 1.08040 1.15812 0.79518 0.79915 0.83856 1.90883 1.56848 1.68218 1.31618 1.47409 1.49638 1.30806 1.08456 1.21822 0.95066 0.97432 0.84629 1.22454 0.92762 0.96777 0.95845 1.62073 1.21474 1.42716 0.99738 1.19728 0.79974 0.95366 0.98069 1.21149 0.92840 1.25401 1.15332 0.91750 1.24990 0.96157 0.96749 0.96706 1.69954 0.99853 1.44504 1.39476 0.86492 0.77840 0.81052 0.82006 1.20730 1.21284 1.19726 1.22384 0.93754 0.96816 0.95963 1.21758 0.95158 0.98527 0.85051 0.92725 0.92585 0.88100 0.85482 0.85861 0.85786 0.85135 0.90332 0.89911 0.91469 0.91921 0.76909 0.91200 0.89409 0.95747 0.88525 0.99134 0.95061 0.92908 0.95550 0.90152 0.91260 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.85 9.63 -19.43 -0.19 -3.04 16 3 C 0.13 1.23 6.66 -39.21 -0.26 0.97 16 4 C -0.21 -1.61 9.04 -39.43 -0.36 -1.97 16 5 C -0.08 -0.59 10.04 -39.61 -0.40 -0.98 16 6 C -0.16 -1.14 10.04 -39.56 -0.40 -1.53 16 7 C -0.07 -0.60 9.68 -39.60 -0.38 -0.98 16 8 C -0.11 -1.01 5.15 -104.48 -0.54 -1.55 16 9 C -0.08 -0.71 5.18 -27.88 -0.14 -0.85 16 10 C 0.15 1.69 5.66 -4.04 -0.02 1.66 16 11 N -0.75 -9.30 5.47 -65.22 -0.36 -9.65 16 12 C 0.71 11.60 8.31 -86.91 -0.72 10.88 16 13 O -0.60 -11.93 15.83 5.29 0.08 -11.85 16 14 N -0.63 -9.96 3.00 -177.91 -0.53 -10.49 16 15 C 0.13 2.28 6.61 -3.36 -0.02 2.26 16 16 C 0.05 1.00 5.47 -3.47 -0.02 0.98 16 17 N -0.53 -11.16 4.62 -235.46 -1.09 -12.25 16 18 C 0.19 4.93 4.72 -4.97 -0.02 4.90 16 19 C -0.51 -14.01 8.41 -34.44 -0.29 -14.30 16 20 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 21 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 23 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 28 C 0.12 1.62 6.59 -3.60 -0.02 1.60 16 29 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.13 0.72 6.30 -52.49 -0.33 0.39 16 33 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 37 H 0.08 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.39 3.89 5.97 -40.82 -0.24 3.65 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.53 7.09 -51.93 -0.37 1.16 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 46 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 50 H 0.07 0.71 5.63 -51.93 -0.29 0.42 16 51 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 408.57 15.07 6.16 6.16 Total: -1.00 -34.11 408.57 -11.12 -45.23 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.18 Total: 0.80 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -2.73 Total: 4.34 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -1.24 Total: -58.06 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.10 Total: -14.89 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.11 -11.12 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601542043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.950 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds