Wall clock time and date at job start Wed Apr 1 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35901 * 117.00410 * 2 1 4 4 C 1.38763 * 120.05197 * 359.97438 * 3 2 1 5 5 C 1.38118 * 119.94227 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05780 * 359.71613 * 5 4 3 7 7 C 1.38251 * 120.10941 * 0.55557 * 6 5 4 8 8 C 1.38164 * 120.05432 * 359.45174 * 7 6 5 9 9 C 1.50693 * 120.02595 * 180.25398 * 8 7 6 10 10 C 1.53003 * 109.46884 * 264.99358 * 9 8 7 11 11 N 1.46506 * 109.47029 * 179.97438 * 10 9 8 12 12 C 1.34782 * 119.99832 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99811 * 354.91618 * 12 11 10 14 14 N 1.34776 * 119.99609 * 174.92109 * 12 11 10 15 15 C 1.47084 * 120.87684 * 184.71761 * 14 12 11 16 16 C 1.53691 * 108.27416 * 128.75555 * 15 14 12 17 17 N 1.46899 * 109.25899 * 54.08322 * 16 15 14 18 18 C 1.46899 * 111.00273 * 172.60664 * 17 16 15 19 19 C 1.50710 * 109.46966 * 294.30145 * 18 17 16 20 20 H 1.08000 * 119.99615 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00458 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47051 * 89.99900 * 23 21 19 25 25 H 1.48499 * 109.47226 * 210.00607 * 23 21 19 26 26 H 1.48507 * 109.46728 * 330.00448 * 23 21 19 27 27 C 1.46898 * 111.26775 * 296.75530 * 17 16 15 28 28 C 1.47077 * 120.88267 * 4.99624 * 14 12 11 29 29 H 1.09006 * 109.46942 * 299.99692 * 1 2 3 30 30 H 1.08998 * 109.47376 * 59.99838 * 1 2 3 31 31 H 1.08993 * 109.47437 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.02786 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.97046 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.94606 * 180.30093 * 6 5 4 35 35 H 1.08000 * 119.96825 * 179.71769 * 7 6 5 36 36 H 1.08995 * 109.47619 * 24.99371 * 9 8 7 37 37 H 1.08997 * 109.47594 * 144.99796 * 9 8 7 38 38 H 1.09000 * 109.47023 * 299.99936 * 10 9 8 39 39 H 1.09004 * 109.47193 * 60.00268 * 10 9 8 40 40 H 0.96996 * 120.00207 * 0.02562 * 11 10 9 41 41 H 1.09004 * 109.62337 * 248.52461 * 15 14 12 42 42 H 1.09000 * 109.62643 * 9.09858 * 15 14 12 43 43 H 1.09000 * 109.64989 * 294.07309 * 16 15 14 44 44 H 1.09007 * 109.41532 * 173.94465 * 16 15 14 45 45 H 1.09000 * 109.46853 * 54.29894 * 18 17 16 46 46 H 1.08991 * 109.47284 * 174.29983 * 18 17 16 47 47 H 0.97000 * 120.00622 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.49021 * 303.14503 * 27 17 16 49 49 H 1.09001 * 109.49510 * 183.06217 * 27 17 16 50 50 H 1.08995 * 109.62887 * 350.89791 * 28 14 12 51 51 H 1.09000 * 109.62732 * 111.48104 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 0.0049 7 6 4.0560 2.5170 -0.0003 8 6 3.4311 1.2848 0.0001 9 6 4.2537 0.0222 0.0003 10 6 4.4264 -0.4742 -1.4366 11 7 5.2266 -1.7014 -1.4365 12 6 5.5095 -2.3215 -2.5993 13 8 5.0248 -1.9161 -3.6380 14 7 6.3296 -3.3910 -2.6104 15 6 6.7334 -4.0193 -3.8775 16 6 8.2652 -4.1445 -3.8866 17 7 8.7007 -4.8534 -2.6759 18 6 10.1386 -5.1494 -2.7276 19 6 10.4105 -6.1271 -3.8418 20 1 9.5964 -6.4923 -4.4503 21 6 11.6985 -6.5551 -4.0842 22 7 12.6897 -6.1108 -3.3429 23 14 12.0355 -7.7675 -5.4648 24 1 12.3113 -7.0239 -6.7202 25 1 13.2131 -8.6017 -5.1146 26 1 10.8498 -8.6408 -5.6571 27 6 8.3624 -4.0954 -1.4639 28 6 6.8395 -3.9644 -1.3557 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2128 2.3204 -0.0014 33 1 1.3340 4.5113 -0.0019 34 1 3.7922 4.6381 0.0093 35 1 5.1344 2.5752 -0.0002 36 1 5.2325 0.2262 0.4343 37 1 3.7469 -0.7417 0.5900 38 1 3.4476 -0.6783 -1.8706 39 1 4.9333 0.2896 -2.0264 40 1 5.5529 -2.0676 -0.5997 41 1 6.2816 -5.0082 -3.9560 42 1 6.4103 -3.3987 -4.7133 43 1 8.7140 -3.1514 -3.9079 44 1 8.5778 -4.7043 -4.7682 45 1 10.6928 -4.2284 -2.9090 46 1 10.4547 -5.5827 -1.7788 47 1 13.5958 -6.4122 -3.5132 48 1 8.8098 -3.1030 -1.5189 49 1 8.7455 -4.6196 -0.5883 50 1 6.5866 -3.3075 -0.5235 51 1 6.3978 -4.9482 -1.1966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601542043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:07 Heat of formation + Delta-G solvation = -48.786693 kcal Electronic energy + Delta-G solvation = -29978.403255 eV Core-core repulsion = 25877.440925 eV Total energy + Delta-G solvation = -4100.962330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.51063 -41.12407 -39.15475 -38.36188 -36.57191 -35.97937 -34.43168 -33.66887 -32.02151 -31.05179 -30.24758 -29.18856 -28.04796 -27.13837 -25.04811 -24.25685 -23.81053 -23.04261 -22.18205 -22.13009 -20.51037 -19.20029 -18.81111 -18.48314 -17.50373 -17.33202 -16.79188 -16.71033 -16.59011 -16.47293 -16.00083 -15.80595 -15.43280 -15.39500 -15.26845 -15.20969 -15.01817 -14.57497 -14.18618 -13.98821 -13.95285 -13.79391 -13.48594 -13.09560 -12.83461 -12.81866 -12.72530 -12.64959 -12.56825 -12.36221 -12.29701 -12.15773 -12.06900 -11.96955 -11.76287 -11.70481 -11.37111 -11.16219 -10.61128 -10.27080 -9.80857 -9.59214 -9.09032 -9.02987 -8.19801 -6.29378 0.35174 0.50421 1.43201 1.43673 1.55390 1.59929 2.08915 2.40806 2.41441 2.77391 2.90550 3.12621 3.24261 3.81377 3.87397 3.95820 4.03564 4.06155 4.13452 4.20118 4.21635 4.26709 4.30839 4.39075 4.44697 4.46581 4.51744 4.56319 4.60199 4.73095 4.73183 4.76107 4.85761 4.92080 4.95548 5.00985 5.03177 5.16357 5.18740 5.24312 5.39972 5.45192 5.47609 5.53443 5.62396 5.65005 5.87941 5.92749 6.04593 6.26928 6.46699 6.59548 6.86124 6.93027 7.40305 7.50324 8.91186 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025472 B = 0.001735 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.971163 B =16137.322667 C =16510.725807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.116 3.884 4 C -0.217 4.217 5 C -0.087 4.087 6 C -0.164 4.164 7 C -0.084 4.084 8 C -0.132 4.132 9 C -0.069 4.069 10 C 0.154 3.846 11 N -0.733 5.733 12 C 0.704 3.296 13 O -0.636 6.636 14 N -0.629 5.629 15 C 0.145 3.855 16 C 0.058 3.942 17 N -0.538 5.538 18 C 0.208 3.792 19 C -0.523 4.523 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.934 5.934 23 Si 0.968 3.032 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.264 1.264 27 C 0.037 3.963 28 C 0.126 3.874 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.409 0.591 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.009 0.991 44 H 0.080 0.920 45 H -0.042 1.042 46 H 0.012 0.988 47 H 0.264 0.736 48 H 0.019 0.981 49 H 0.091 0.909 50 H 0.110 0.890 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.693 17.666 12.317 32.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.070 3.930 4 C -0.235 4.235 5 C -0.105 4.105 6 C -0.182 4.182 7 C -0.102 4.102 8 C -0.134 4.134 9 C -0.107 4.107 10 C 0.030 3.970 11 N -0.391 5.391 12 C 0.405 3.595 13 O -0.518 6.518 14 N -0.365 5.365 15 C 0.021 3.979 16 C -0.072 4.072 17 N -0.263 5.263 18 C 0.082 3.918 19 C -0.561 4.561 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.574 5.574 23 Si 0.793 3.207 24 H -0.201 1.201 25 H -0.208 1.208 26 H -0.188 1.188 27 C -0.092 4.092 28 C 0.004 3.996 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.248 0.752 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.028 0.972 44 H 0.098 0.902 45 H -0.024 1.024 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.038 0.962 49 H 0.109 0.891 50 H 0.128 0.872 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.037 17.313 11.639 32.590 hybrid contribution 1.100 0.158 -0.436 1.194 sum -23.937 17.472 11.203 31.682 Atomic orbital electron populations 1.23285 0.76853 1.05228 1.02109 1.86062 1.23040 1.26965 1.88535 1.19125 0.92180 0.84897 0.96775 1.21504 1.01006 0.92253 1.08775 1.21300 0.95059 0.97635 0.96481 1.21381 0.94252 0.99120 1.03429 1.21213 1.00967 0.90962 0.97019 1.19175 0.90659 0.95877 1.07641 1.20479 1.00573 0.94850 0.94783 1.21051 0.94104 0.84321 0.97552 1.45127 1.58081 1.28470 1.07462 1.15980 0.79369 0.79825 0.84284 1.90857 1.58368 1.69229 1.33373 1.47420 1.49595 1.30801 1.08713 1.21587 0.92790 0.97973 0.85501 1.22362 0.94590 0.95372 0.94837 1.61994 1.18248 1.44321 1.01724 1.19382 0.82503 0.93406 0.96499 1.21473 0.93124 1.25683 1.15856 0.91660 1.25888 0.95956 0.98581 0.99189 1.70075 1.00298 1.45858 1.41200 0.85400 0.77882 0.78673 0.78768 1.20121 1.20821 1.18783 1.22532 0.96283 0.95952 0.94393 1.21866 0.92341 1.00202 0.85226 0.91404 0.92130 0.87006 0.83865 0.83613 0.83941 0.83936 0.88613 0.89696 0.93426 0.93065 0.75163 0.90288 0.89801 0.97227 0.90154 1.02387 0.96961 0.92732 0.96240 0.89098 0.87191 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -5.88 9.63 -92.43 -0.89 -6.77 16 3 C 0.12 2.04 6.66 22.51 0.15 2.19 16 4 C -0.22 -3.07 9.04 22.37 0.20 -2.87 16 5 C -0.09 -1.07 10.04 22.25 0.22 -0.85 16 6 C -0.16 -2.11 10.04 22.29 0.22 -1.89 16 7 C -0.08 -1.23 9.68 22.26 0.22 -1.02 16 8 C -0.13 -2.28 5.15 -19.77 -0.10 -2.38 16 9 C -0.07 -1.10 5.18 29.85 0.15 -0.94 16 10 C 0.15 3.40 5.66 86.38 0.49 3.89 16 11 N -0.73 -16.91 5.47 -478.51 -2.62 -19.52 16 12 C 0.70 22.32 8.31 179.05 1.49 23.81 16 13 O -0.64 -25.42 15.83 -3.98 -0.06 -25.48 16 14 N -0.63 -19.12 3.00 -835.05 -2.51 -21.63 16 15 C 0.15 4.90 6.61 86.50 0.57 5.47 16 16 C 0.06 2.29 5.47 86.54 0.47 2.76 16 17 N -0.54 -22.54 4.62 -898.88 -4.15 -26.69 16 18 C 0.21 10.90 4.72 85.56 0.40 11.31 16 19 C -0.52 -29.22 8.41 25.60 0.22 -29.01 16 20 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 21 C 0.00 0.11 5.46 84.65 0.46 0.57 16 22 N -0.93 -55.77 13.29 21.44 0.28 -55.48 16 23 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.04 1.22 5.62 86.38 0.49 1.71 16 28 C 0.13 3.13 6.59 86.35 0.57 3.70 16 29 H 0.07 0.48 7.66 -2.38 -0.02 0.46 16 30 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 31 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.14 1.41 6.30 -2.91 -0.02 1.39 16 33 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.10 1.17 8.05 -2.39 -0.02 1.15 16 37 H 0.08 1.31 7.69 -2.39 -0.02 1.29 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.41 6.86 5.97 -92.71 -0.55 6.30 16 41 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 42 H 0.08 2.93 7.09 -2.39 -0.02 2.91 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.08 3.42 6.67 -2.38 -0.02 3.41 16 45 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 46 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 47 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.09 2.78 7.99 -2.39 -0.02 2.77 16 50 H 0.11 1.84 5.63 -2.39 -0.01 1.82 16 51 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -75.21 408.57 -0.21 -75.42 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.37 Total: 16.28 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 7.34 Total: 17.77 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -8.99 Total: -123.33 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.95 Total: -32.25 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -75.21 -0.21 -75.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601542043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.630 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds