Wall clock time and date at job start Wed Apr 1 2020 05:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 5 5 C 1.53000 * 109.47072 * 170.00122 * 4 2 1 6 6 H 1.08994 * 110.64178 * 54.29571 * 5 4 2 7 7 C 1.54330 * 110.72118 * 291.15608 * 5 4 2 8 8 N 1.47314 * 107.12313 * 219.57364 * 7 5 4 9 9 S 1.65602 * 125.61840 * 178.81623 * 8 7 5 10 10 O 1.42104 * 104.27177 * 25.93591 * 9 8 7 11 11 O 1.42098 * 104.27521 * 153.78637 * 9 8 7 12 12 C 1.81397 * 104.44854 * 269.86408 * 9 8 7 13 13 C 1.53006 * 109.46820 * 179.97438 * 12 9 8 14 14 C 1.50701 * 109.47121 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99895 * 0.02562 * 14 13 12 16 16 C 1.37870 * 119.99664 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00616 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99591 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47222 * 60.00069 * 18 16 14 20 20 H 1.48499 * 109.46850 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47218 * 300.00072 * 18 16 14 22 22 C 1.47425 * 108.73183 * 358.70066 * 8 7 5 23 23 C 1.54900 * 104.83808 * 24.28363 * 22 8 7 24 24 H 1.09005 * 111.00714 * 81.06371 * 23 22 8 25 25 C 1.53002 * 111.04312 * 204.90329 * 23 22 8 26 26 N 1.46904 * 109.46915 * 287.21566 * 25 23 22 27 27 C 1.46898 * 110.99900 * 169.99511 * 26 25 23 28 28 C 1.46899 * 110.99694 * 293.95225 * 26 25 23 29 29 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 30 30 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 31 31 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 32 32 H 1.09004 * 109.47457 * 183.95363 * 3 2 1 33 33 H 1.09001 * 109.46615 * 303.95014 * 3 2 1 34 34 H 1.08990 * 109.47358 * 63.94680 * 3 2 1 35 35 H 1.08993 * 109.47164 * 289.99976 * 4 2 1 36 36 H 1.08996 * 109.46920 * 50.00010 * 4 2 1 37 37 H 1.09003 * 109.88181 * 338.86773 * 7 5 4 38 38 H 1.09006 * 109.88223 * 100.02467 * 7 5 4 39 39 H 1.08997 * 109.47051 * 299.99633 * 12 9 8 40 40 H 1.08997 * 109.47514 * 60.00119 * 12 9 8 41 41 H 1.08997 * 109.47073 * 299.99698 * 13 12 9 42 42 H 1.08997 * 109.46916 * 59.99831 * 13 12 9 43 43 H 0.96999 * 120.00315 * 179.97438 * 17 16 14 44 44 H 1.09007 * 110.36563 * 265.44162 * 22 8 7 45 45 H 1.09003 * 110.36828 * 143.12717 * 22 8 7 46 46 H 1.09001 * 109.46836 * 47.21114 * 25 23 22 47 47 H 1.09001 * 109.47439 * 167.21113 * 25 23 22 48 48 H 1.09005 * 109.46849 * 59.99942 * 27 26 25 49 49 H 1.09003 * 109.46905 * 179.97438 * 27 26 25 50 50 H 1.08999 * 109.47008 * 299.99755 * 27 26 25 51 51 H 1.08996 * 109.47316 * 59.99865 * 28 26 25 52 52 H 1.08997 * 109.46910 * 180.02562 * 28 26 25 53 53 H 1.09000 * 109.46650 * 299.99700 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9705 6 1 3.9989 0.0057 0.8293 7 6 3.8084 -1.9041 -0.2081 8 7 4.9311 -2.7636 0.2054 9 16 5.6095 -3.9687 -0.7055 10 8 5.3446 -3.5847 -2.0478 11 8 6.9417 -4.0666 -0.2209 12 6 4.6626 -5.4533 -0.2695 13 6 5.2003 -6.6504 -1.0562 14 6 4.4142 -7.8839 -0.6935 15 1 3.6110 -7.8203 0.0258 16 6 4.7195 -9.0933 -1.2807 17 7 5.6971 -9.1707 -2.1570 18 14 3.7445 -10.6221 -0.8317 19 1 2.3130 -10.4123 -1.1660 20 1 4.2665 -11.7840 -1.5951 21 1 3.8795 -10.8856 0.6235 22 6 5.3524 -2.3717 1.5627 23 6 4.1019 -1.7064 2.1896 24 1 3.4065 -2.4573 2.5650 25 6 4.4973 -0.7273 3.2969 26 7 4.9457 -1.4782 4.4772 27 6 5.5543 -0.5832 5.4705 28 6 3.8387 -2.2433 5.0662 29 1 -0.3634 0.4513 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0829 1.3432 -0.0709 33 1 1.5899 1.9162 -0.8525 34 1 1.7044 1.8724 0.9231 35 1 1.7975 -0.2247 2.0628 36 1 1.5089 -1.7405 1.1758 37 1 2.9337 -2.5169 -0.4258 38 1 4.0858 -1.3244 -1.0886 39 1 4.7611 -5.6462 0.7987 40 1 3.6120 -5.2995 -0.5157 41 1 5.1015 -6.4572 -2.1243 42 1 6.2510 -6.8043 -0.8104 43 1 5.9122 -10.0217 -2.5699 44 1 6.1764 -1.6598 1.5134 45 1 5.6433 -3.2505 2.1382 46 1 5.3064 -0.0876 2.9443 47 1 3.6374 -0.1124 3.5625 48 1 4.8224 0.1602 5.7864 49 1 5.8770 -1.1648 6.3341 50 1 6.4147 -0.0810 5.0282 51 1 3.4518 -2.9478 4.3300 52 1 4.1980 -2.7893 5.9384 53 1 3.0447 -1.5600 5.3675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867588437.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:45 Heat of formation + Delta-G solvation = -89.907986 kcal Electronic energy + Delta-G solvation = -30271.098844 eV Core-core repulsion = 26303.797312 eV Total energy + Delta-G solvation = -3967.301532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.55662 -38.23154 -38.11750 -37.43987 -37.01036 -35.89565 -33.12647 -32.99745 -31.05690 -28.44500 -28.39226 -27.62085 -27.26600 -26.76929 -24.12695 -23.35458 -22.98350 -21.27936 -20.91803 -19.91917 -19.06498 -18.24984 -17.64981 -17.06240 -16.70920 -16.55245 -16.46555 -16.19875 -15.94719 -15.62842 -15.59649 -15.29434 -14.98588 -14.66496 -14.44452 -14.36564 -13.85423 -13.73368 -13.64114 -13.40947 -13.22665 -13.18570 -13.17430 -13.13826 -12.90353 -12.80313 -12.70051 -12.65939 -12.56620 -12.52965 -12.24589 -12.22827 -12.14084 -12.06824 -11.74230 -11.72306 -11.59439 -11.35163 -11.16233 -10.63754 -9.87763 -9.24078 -9.17544 -8.25316 -6.39967 -0.73030 1.40834 1.44921 1.53050 1.76843 2.38691 2.85197 2.89826 3.07499 3.10618 3.13093 3.58279 3.67784 3.89113 4.00389 4.10541 4.12923 4.27426 4.32729 4.37593 4.44828 4.49383 4.51849 4.52067 4.55351 4.65244 4.66554 4.72558 4.74831 4.76938 4.82789 4.87041 4.88174 4.95972 4.99299 5.09209 5.09536 5.10554 5.12238 5.18167 5.20190 5.25136 5.27316 5.42726 5.51316 5.68035 6.06092 6.14140 6.15049 6.16470 6.16887 6.73058 7.30102 8.86922 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.003047 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.858607 B = 9186.038475 C =10046.758350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.566 5.566 3 C 0.021 3.979 4 C 0.069 3.931 5 C -0.076 4.076 6 H 0.096 0.904 7 C 0.130 3.870 8 N -1.016 6.016 9 S 2.628 3.372 10 O -0.994 6.994 11 O -0.993 6.993 12 C -0.585 4.585 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.076 0.924 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.262 1.262 22 C 0.131 3.869 23 C -0.081 4.081 24 H 0.096 0.904 25 C 0.072 3.928 26 N -0.565 5.565 27 C 0.026 3.974 28 C 0.020 3.980 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.005 0.995 42 H 0.006 0.994 43 H 0.268 0.732 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.031 0.969 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.069 0.931 52 H 0.069 0.931 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 23.791 15.541 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.290 5.290 3 C -0.127 4.127 4 C -0.059 4.059 5 C -0.096 4.096 6 H 0.115 0.885 7 C 0.006 3.994 8 N -0.855 5.855 9 S 2.727 3.273 10 O -0.984 6.984 11 O -0.984 6.984 12 C -0.717 4.717 13 C -0.018 4.018 14 C -0.579 4.579 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.574 5.574 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.209 1.209 21 H -0.187 1.187 22 C 0.006 3.994 23 C -0.102 4.102 24 H 0.114 0.886 25 C -0.057 4.057 26 N -0.290 5.290 27 C -0.122 4.122 28 C -0.128 4.128 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.088 0.912 52 H 0.087 0.913 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.100 23.203 14.177 28.674 hybrid contribution -1.277 -0.409 0.941 1.639 sum -10.378 22.794 15.118 29.255 Atomic orbital electron populations 1.22379 0.86424 1.02527 1.00909 1.61940 1.08729 1.14779 1.43574 1.22455 1.01145 0.88159 1.00893 1.22122 0.93180 0.98878 0.91744 1.22220 0.96021 0.98652 0.92755 0.88544 1.21845 0.87413 0.92178 0.98006 1.58580 1.48723 1.48741 1.29450 1.04249 0.74498 0.75536 0.72980 1.93485 1.86362 1.82009 1.36582 1.93489 1.36013 1.87234 1.81623 1.30364 1.14675 1.15435 1.11227 1.18819 0.96169 0.92580 0.94201 1.21472 1.17871 0.93081 1.25440 0.90599 1.26142 0.96322 1.03166 0.94625 1.70101 1.30973 1.27225 1.29126 0.85344 0.78830 0.77170 0.78791 1.18691 1.20908 1.18685 1.22072 0.97418 1.00149 0.79753 1.22412 0.96019 0.97873 0.93892 0.88620 1.22053 0.99894 0.94223 0.89491 1.61932 1.31495 1.27652 1.07883 1.22381 0.99080 0.95445 0.95281 1.22464 0.92233 0.98014 1.00084 0.95015 0.91004 0.91421 0.91097 0.91194 0.94906 0.92987 0.90316 0.91151 0.92028 0.84235 0.84279 0.97633 0.97615 0.92349 0.91375 0.90785 0.90027 0.93023 0.95048 0.91135 0.91150 0.91185 0.91263 0.94907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.57 127.69 1.22 1.54 16 2 N -0.57 -8.50 4.88 -948.86 -4.63 -13.13 16 3 C 0.02 0.26 9.34 127.69 1.19 1.45 16 4 C 0.07 0.93 4.28 86.30 0.37 1.30 16 5 C -0.08 -1.20 2.33 -9.60 -0.02 -1.23 16 6 H 0.10 1.37 6.29 -2.39 -0.02 1.36 16 7 C 0.13 3.10 6.38 86.68 0.55 3.65 16 8 N -1.02 -29.02 3.63 -505.71 -1.83 -30.86 16 9 S 2.63 102.92 5.65 -56.49 -0.32 102.60 16 10 O -0.99 -44.89 17.60 -127.65 -2.25 -47.14 16 11 O -0.99 -44.69 17.60 -127.65 -2.25 -46.94 16 12 C -0.58 -23.51 6.12 71.98 0.44 -23.07 16 13 C 0.02 1.15 4.98 29.85 0.15 1.30 16 14 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 15 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 16 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 17 N -0.93 -57.91 13.29 21.44 0.28 -57.63 16 18 Si 0.98 43.78 29.54 68.60 2.03 45.80 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 C 0.13 3.06 6.31 86.85 0.55 3.61 16 23 C -0.08 -1.30 2.43 -9.40 -0.02 -1.32 16 24 H 0.10 1.47 6.20 -2.38 -0.01 1.45 16 25 C 0.07 0.93 4.42 86.30 0.38 1.31 16 26 N -0.57 -8.41 4.97 -948.84 -4.71 -13.12 16 27 C 0.03 0.31 9.57 127.69 1.22 1.53 16 28 C 0.02 0.26 9.35 127.69 1.19 1.45 16 29 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 32 H 0.07 0.86 6.38 -2.38 -0.02 0.85 16 33 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 34 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.05 0.57 8.03 -2.39 -0.02 0.55 16 36 H 0.08 1.11 7.93 -2.39 -0.02 1.09 16 37 H 0.07 1.64 7.73 -2.39 -0.02 1.62 16 38 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.14 4.96 8.14 -2.39 -0.02 4.94 16 40 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.07 1.58 7.91 -2.38 -0.02 1.57 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 1.03 7.89 -2.39 -0.02 1.01 16 47 H 0.05 0.54 8.03 -2.39 -0.02 0.52 16 48 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 49 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 50 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 51 H 0.07 0.95 6.33 -2.39 -0.02 0.94 16 52 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 53 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -77.20 427.03 -4.92 -82.12 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.84 Total: 16.91 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 7.92 Total: -38.62 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -10.89 Total: -114.74 kcal Atomic # 8 Polarization: -89.58 SS G_CDS: -4.49 Total: -94.08 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 102.92 SS G_CDS: -0.32 Total: 102.60 kcal Total: -77.20 -4.92 -82.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867588437.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.789 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds