Wall clock time and date at job start Wed Apr 1 2020 04:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99556 * 2 1 4 4 C 1.46896 * 111.00061 * 123.95404 * 2 1 3 5 5 C 1.50700 * 109.47139 * 166.18302 * 4 2 1 6 6 C 1.37980 * 120.07437 * 105.37251 * 5 4 2 7 7 C 1.38340 * 120.14284 * 179.97438 * 6 5 4 8 8 C 1.38378 * 120.29587 * 0.02562 * 7 6 5 9 9 C 1.37945 * 120.14408 * 0.02562 * 8 7 6 10 10 C 1.39555 * 120.07081 * 285.37157 * 5 4 2 11 11 C 1.47844 * 120.14618 * 0.04482 * 10 5 4 12 12 O 1.21549 * 120.00213 * 356.94379 * 11 10 5 13 13 N 1.34784 * 119.99877 * 176.94871 * 11 10 5 14 14 C 1.46501 * 119.99640 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46989 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.50855 * 60.00097 * 15 14 13 17 17 C 1.53288 * 109.51354 * 180.09825 * 15 14 13 18 18 N 1.47148 * 108.38615 * 172.22515 * 17 15 14 19 19 C 1.36940 * 120.98506 * 129.48671 * 18 17 15 20 20 H 1.07998 * 120.00461 * 206.60226 * 19 18 17 21 21 C 1.38816 * 119.99690 * 26.59756 * 19 18 17 22 22 N 1.31624 * 120.00014 * 15.34059 * 21 19 18 23 23 Si 1.86800 * 120.00156 * 195.33287 * 21 19 18 24 24 H 1.48498 * 109.46852 * 90.00422 * 23 21 19 25 25 H 1.48501 * 109.47341 * 210.00573 * 23 21 19 26 26 H 1.48501 * 109.47161 * 330.00351 * 23 21 19 27 27 C 1.47152 * 118.03653 * 309.46613 * 18 17 15 28 28 C 1.53302 * 108.38444 * 50.53429 * 27 18 17 29 29 O 1.42954 * 109.51025 * 299.89914 * 15 14 13 30 30 H 1.09002 * 109.46998 * 296.04694 * 1 2 3 31 31 H 1.09002 * 109.47006 * 56.04097 * 1 2 3 32 32 H 1.08998 * 109.47137 * 176.04522 * 1 2 3 33 33 H 1.09006 * 109.46969 * 189.68673 * 3 2 1 34 34 H 1.09000 * 109.47605 * 309.68823 * 3 2 1 35 35 H 1.09002 * 109.47081 * 69.69227 * 3 2 1 36 36 H 1.08999 * 109.46830 * 46.18564 * 4 2 1 37 37 H 1.09005 * 109.47297 * 286.18408 * 4 2 1 38 38 H 1.07995 * 119.92691 * 0.25571 * 6 5 4 39 39 H 1.08001 * 119.85073 * 179.97438 * 7 6 5 40 40 H 1.07993 * 119.93273 * 179.97438 * 8 7 6 41 41 H 1.07993 * 120.07482 * 180.02562 * 9 8 7 42 42 H 0.96993 * 120.00216 * 359.97438 * 13 11 10 43 43 H 1.08999 * 109.46780 * 299.99648 * 14 13 11 44 44 H 1.08995 * 109.47245 * 59.99829 * 14 13 11 45 45 H 1.09002 * 109.68325 * 291.95138 * 17 15 14 46 46 H 1.09005 * 109.68231 * 52.46354 * 17 15 14 47 47 H 0.97004 * 119.99981 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.68137 * 170.25819 * 27 18 17 49 49 H 1.09001 * 109.67984 * 290.77305 * 27 18 17 50 50 H 1.08999 * 109.51050 * 67.61912 * 28 27 18 51 51 H 1.08994 * 109.51400 * 187.77280 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4635 -1.0332 0.9269 6 6 4.4051 -0.3286 1.6486 7 6 5.7532 -0.5731 1.4567 8 6 6.1666 -1.5243 0.5406 9 6 5.2356 -2.2350 -0.1881 10 6 3.8737 -1.9939 0.0014 11 6 2.8703 -2.7519 -0.7760 12 8 1.6849 -2.5790 -0.5705 13 7 3.2701 -3.6348 -1.7127 14 6 2.2758 -4.3863 -2.4826 15 6 2.9889 -5.3113 -3.4710 16 1 3.6259 -6.0066 -2.9241 17 6 1.9494 -6.0964 -4.2789 18 7 2.6488 -6.8334 -5.3432 19 6 2.4341 -8.1727 -5.5316 20 1 3.2038 -8.7857 -5.9769 21 6 1.2272 -8.7425 -5.1500 22 7 0.1890 -7.9751 -4.8938 23 14 1.0764 -10.5984 -5.0004 24 1 1.4247 -11.0134 -3.6178 25 1 -0.3185 -11.0078 -5.3036 26 1 2.0031 -11.2494 -5.9609 27 6 3.5855 -6.0887 -6.1996 28 6 4.5454 -5.3039 -5.2981 29 8 3.7888 -4.5314 -4.3629 30 1 -0.3633 0.4513 0.9233 31 1 -0.3633 0.5741 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0714 1.3477 -0.1729 34 1 1.5129 1.9459 -0.7908 35 1 1.7926 1.8385 0.9638 36 1 1.4614 -1.7129 1.2162 37 1 1.8583 -0.1941 2.0553 38 1 4.0889 0.4121 2.3680 39 1 6.4861 -0.0186 2.0238 40 1 7.2205 -1.7102 0.3953 41 1 5.5595 -2.9773 -0.9024 42 1 4.2161 -3.7726 -1.8769 43 1 1.6646 -4.9811 -1.8039 44 1 1.6394 -3.6914 -3.0304 45 1 1.4308 -6.7985 -3.6260 46 1 1.2304 -5.4065 -4.7208 47 1 -0.6545 -8.3733 -4.6275 48 1 4.1504 -6.7857 -6.8187 49 1 3.0316 -5.3984 -6.8359 50 1 5.1886 -5.9993 -4.7586 51 1 5.1572 -4.6397 -5.9084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035611379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:38 Heat of formation + Delta-G solvation = -11.143510 kcal Electronic energy + Delta-G solvation = -31242.276877 eV Core-core repulsion = 27142.946878 eV Total energy + Delta-G solvation = -4099.329999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.39974 -38.76746 -37.99407 -37.05460 -34.73781 -34.26883 -31.89433 -31.80543 -31.25505 -30.41223 -27.57981 -27.42455 -26.88353 -25.51210 -23.69880 -23.23575 -22.55540 -21.79452 -20.89135 -20.36455 -19.56344 -17.76583 -16.94566 -16.15905 -16.01042 -15.83953 -15.52878 -15.41448 -15.05388 -15.03146 -14.47438 -14.46418 -14.33497 -14.27605 -13.94420 -13.51630 -13.22982 -12.98325 -12.87805 -12.78949 -12.64533 -12.40559 -12.13061 -12.04094 -11.75548 -11.62354 -11.54527 -11.48645 -11.15272 -11.07189 -10.85487 -10.71862 -10.39920 -10.25168 -10.01820 -9.65409 -9.42875 -9.13609 -9.06048 -8.96790 -8.66144 -8.55694 -8.25377 -6.75559 -5.84503 -3.29592 0.78935 1.13946 3.00043 3.33657 3.39974 3.42038 3.42454 3.77174 4.15864 4.28486 4.43315 4.60510 4.60977 4.71600 4.87434 5.07280 5.14707 5.21461 5.25974 5.28442 5.35506 5.36674 5.46532 5.55248 5.58986 5.67103 5.68168 5.71620 5.79194 5.87694 5.90201 5.94145 6.05714 6.06756 6.12330 6.14818 6.22784 6.27704 6.34067 6.43242 6.52475 6.68414 6.76453 6.79966 7.05446 7.08541 7.12055 7.50191 7.69946 7.80032 7.86234 8.33135 8.52489 9.10671 9.73156 10.30325 11.23249 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.002534 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.815547 B =11046.233087 C =11821.105061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.523 5.523 3 C 0.022 3.978 4 C 0.094 3.906 5 C -0.024 4.024 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.128 4.128 9 C -0.088 4.088 10 C -0.107 4.107 11 C 0.554 3.446 12 O -0.517 6.517 13 N -0.719 5.719 14 C 0.136 3.864 15 C 0.055 3.945 16 H 0.054 0.946 17 C 0.153 3.847 18 N -0.595 5.595 19 C -0.256 4.256 20 H 0.069 0.931 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.109 3.891 28 C 0.050 3.950 29 O -0.389 6.389 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.020 0.980 36 H 0.108 0.892 37 H 0.030 0.970 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.398 0.602 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.031 0.969 47 H 0.256 0.744 48 H 0.061 0.939 49 H 0.027 0.973 50 H 0.042 0.958 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.979 16.544 13.144 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.246 5.246 3 C -0.126 4.126 4 C -0.033 4.033 5 C -0.026 4.026 6 C -0.145 4.145 7 C -0.119 4.119 8 C -0.147 4.147 9 C -0.107 4.107 10 C -0.111 4.111 11 C 0.341 3.659 12 O -0.394 6.394 13 N -0.370 5.370 14 C 0.013 3.987 15 C -0.005 4.005 16 H 0.072 0.928 17 C 0.026 3.974 18 N -0.319 5.319 19 C -0.385 4.385 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.017 4.017 28 C -0.028 4.028 29 O -0.309 6.309 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.126 0.874 37 H 0.048 0.952 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.233 0.767 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.044 0.956 50 H 0.061 0.939 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.055 16.540 12.856 22.822 hybrid contribution 0.211 -0.865 0.569 1.057 sum 9.265 15.675 13.425 22.623 Atomic orbital electron populations 1.22308 0.86713 1.03038 0.99308 1.61750 1.08070 1.12235 1.42522 1.22455 1.00996 0.89497 0.99683 1.21172 0.91324 1.00223 0.90592 1.19873 0.95725 0.93312 0.93651 1.21030 0.92819 1.00135 1.00520 1.21266 0.95729 0.97299 0.97562 1.21085 0.99653 0.96948 0.96980 1.21386 0.92096 0.98771 0.98454 1.19882 0.93286 0.98912 0.99026 1.18117 0.88359 0.79402 0.80067 1.90714 1.17105 1.65057 1.66507 1.45901 1.10675 1.42172 1.38287 1.21371 0.90729 0.94284 0.92336 1.23159 0.94566 0.92167 0.90593 0.92783 1.21316 0.90981 0.94437 0.90632 1.44051 1.49178 1.06091 1.32554 1.19202 0.97503 0.82989 1.38826 0.91358 1.25084 0.94794 0.98109 1.01651 1.70004 1.00732 1.33844 1.50051 0.86232 0.77015 0.85128 0.78032 1.21347 1.21627 1.20425 1.21601 0.92448 0.94804 0.92886 1.22998 0.93505 0.94681 0.91611 1.87787 1.61086 1.34027 1.47985 0.96568 0.91823 0.90340 0.91717 0.91707 0.96186 0.87392 0.95158 0.85908 0.85826 0.85572 0.85514 0.76707 0.90099 0.90695 0.88481 0.95085 0.93396 0.92029 0.95553 0.93936 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.38 60.07 0.56 0.97 16 2 N -0.52 -6.64 3.97 -252.71 -1.00 -7.64 16 3 C 0.02 0.23 9.38 60.07 0.56 0.79 16 4 C 0.09 1.13 4.11 -4.98 -0.02 1.11 16 5 C -0.02 -0.28 4.62 -104.23 -0.48 -0.76 16 6 C -0.13 -1.18 9.39 -39.64 -0.37 -1.55 16 7 C -0.10 -0.82 10.04 -39.49 -0.40 -1.22 16 8 C -0.13 -1.12 10.03 -39.64 -0.40 -1.51 16 9 C -0.09 -0.93 9.54 -39.18 -0.37 -1.30 16 10 C -0.11 -1.37 5.87 -104.97 -0.62 -1.99 16 11 C 0.55 8.46 7.73 -12.33 -0.10 8.37 16 12 O -0.52 -9.02 12.08 5.32 0.06 -8.96 16 13 N -0.72 -10.68 5.40 -61.25 -0.33 -11.01 16 14 C 0.14 2.35 5.37 -4.04 -0.02 2.33 16 15 C 0.05 1.04 2.86 -26.58 -0.08 0.96 16 16 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 17 C 0.15 3.61 4.72 -3.54 -0.02 3.59 16 18 N -0.59 -14.82 3.05 -171.83 -0.52 -15.34 16 19 C -0.26 -6.91 9.66 -15.06 -0.15 -7.06 16 20 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 21 C 0.00 0.07 4.98 -17.43 -0.09 -0.02 16 22 N -0.90 -25.82 11.07 55.49 0.61 -25.21 16 23 Si 0.91 21.38 29.58 -169.99 -5.03 16.35 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 C 0.11 2.26 6.74 -3.53 -0.02 2.24 16 28 C 0.05 0.87 6.98 37.31 0.26 1.13 16 29 O -0.39 -7.26 10.14 -35.23 -0.36 -7.62 16 30 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 32 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 33 H 0.06 0.68 7.37 -51.93 -0.38 0.30 16 34 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 35 H 0.02 0.18 8.02 -51.93 -0.42 -0.24 16 36 H 0.11 1.51 6.10 -51.93 -0.32 1.19 16 37 H 0.03 0.32 7.80 -51.93 -0.40 -0.09 16 38 H 0.12 0.91 8.00 -52.49 -0.42 0.49 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.13 1.16 6.42 -52.49 -0.34 0.82 16 42 H 0.40 5.21 6.40 -40.82 -0.26 4.95 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.10 2.52 6.12 -51.93 -0.32 2.20 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 49 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 403.42 15.07 6.08 6.08 Total: -1.00 -31.43 403.42 -10.50 -41.93 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.28 Total: 5.34 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.74 Total: 6.08 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -1.24 Total: -59.20 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.29 Total: -16.58 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.43 -10.50 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035611379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.789 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds