Wall clock time and date at job start Wed Apr 1 2020 04:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99556 * 2 1 4 4 C 1.46896 * 111.00061 * 123.95404 * 2 1 3 5 5 C 1.50700 * 109.47139 * 166.18302 * 4 2 1 6 6 C 1.37980 * 120.07437 * 105.37251 * 5 4 2 7 7 C 1.38340 * 120.14284 * 179.97438 * 6 5 4 8 8 C 1.38378 * 120.29587 * 0.02562 * 7 6 5 9 9 C 1.37945 * 120.14408 * 0.02562 * 8 7 6 10 10 C 1.39555 * 120.07081 * 285.37157 * 5 4 2 11 11 C 1.47844 * 120.14618 * 0.04482 * 10 5 4 12 12 O 1.21549 * 120.00213 * 356.94379 * 11 10 5 13 13 N 1.34784 * 119.99877 * 176.94871 * 11 10 5 14 14 C 1.46501 * 119.99640 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46989 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.50855 * 60.00097 * 15 14 13 17 17 C 1.53288 * 109.51354 * 180.09825 * 15 14 13 18 18 N 1.47148 * 108.38615 * 172.22515 * 17 15 14 19 19 C 1.36940 * 120.98506 * 129.48671 * 18 17 15 20 20 H 1.07998 * 120.00461 * 206.60226 * 19 18 17 21 21 C 1.38816 * 119.99690 * 26.59756 * 19 18 17 22 22 N 1.31624 * 120.00014 * 15.34059 * 21 19 18 23 23 Si 1.86800 * 120.00156 * 195.33287 * 21 19 18 24 24 H 1.48498 * 109.46852 * 90.00422 * 23 21 19 25 25 H 1.48501 * 109.47341 * 210.00573 * 23 21 19 26 26 H 1.48501 * 109.47161 * 330.00351 * 23 21 19 27 27 C 1.47152 * 118.03653 * 309.46613 * 18 17 15 28 28 C 1.53302 * 108.38444 * 50.53429 * 27 18 17 29 29 O 1.42954 * 109.51025 * 299.89914 * 15 14 13 30 30 H 1.09002 * 109.46998 * 296.04694 * 1 2 3 31 31 H 1.09002 * 109.47006 * 56.04097 * 1 2 3 32 32 H 1.08998 * 109.47137 * 176.04522 * 1 2 3 33 33 H 1.09006 * 109.46969 * 189.68673 * 3 2 1 34 34 H 1.09000 * 109.47605 * 309.68823 * 3 2 1 35 35 H 1.09002 * 109.47081 * 69.69227 * 3 2 1 36 36 H 1.08999 * 109.46830 * 46.18564 * 4 2 1 37 37 H 1.09005 * 109.47297 * 286.18408 * 4 2 1 38 38 H 1.07995 * 119.92691 * 0.25571 * 6 5 4 39 39 H 1.08001 * 119.85073 * 179.97438 * 7 6 5 40 40 H 1.07993 * 119.93273 * 179.97438 * 8 7 6 41 41 H 1.07993 * 120.07482 * 180.02562 * 9 8 7 42 42 H 0.96993 * 120.00216 * 359.97438 * 13 11 10 43 43 H 1.08999 * 109.46780 * 299.99648 * 14 13 11 44 44 H 1.08995 * 109.47245 * 59.99829 * 14 13 11 45 45 H 1.09002 * 109.68325 * 291.95138 * 17 15 14 46 46 H 1.09005 * 109.68231 * 52.46354 * 17 15 14 47 47 H 0.97004 * 119.99981 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.68137 * 170.25819 * 27 18 17 49 49 H 1.09001 * 109.67984 * 290.77305 * 27 18 17 50 50 H 1.08999 * 109.51050 * 67.61912 * 28 27 18 51 51 H 1.08994 * 109.51400 * 187.77280 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4635 -1.0332 0.9269 6 6 4.4051 -0.3286 1.6486 7 6 5.7532 -0.5731 1.4567 8 6 6.1666 -1.5243 0.5406 9 6 5.2356 -2.2350 -0.1881 10 6 3.8737 -1.9939 0.0014 11 6 2.8703 -2.7519 -0.7760 12 8 1.6849 -2.5790 -0.5705 13 7 3.2701 -3.6348 -1.7127 14 6 2.2758 -4.3863 -2.4826 15 6 2.9889 -5.3113 -3.4710 16 1 3.6259 -6.0066 -2.9241 17 6 1.9494 -6.0964 -4.2789 18 7 2.6488 -6.8334 -5.3432 19 6 2.4341 -8.1727 -5.5316 20 1 3.2038 -8.7857 -5.9769 21 6 1.2272 -8.7425 -5.1500 22 7 0.1890 -7.9751 -4.8938 23 14 1.0764 -10.5984 -5.0004 24 1 1.4247 -11.0134 -3.6178 25 1 -0.3185 -11.0078 -5.3036 26 1 2.0031 -11.2494 -5.9609 27 6 3.5855 -6.0887 -6.1996 28 6 4.5454 -5.3039 -5.2981 29 8 3.7888 -4.5314 -4.3629 30 1 -0.3633 0.4513 0.9233 31 1 -0.3633 0.5741 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0714 1.3477 -0.1729 34 1 1.5129 1.9459 -0.7908 35 1 1.7926 1.8385 0.9638 36 1 1.4614 -1.7129 1.2162 37 1 1.8583 -0.1941 2.0553 38 1 4.0889 0.4121 2.3680 39 1 6.4861 -0.0186 2.0238 40 1 7.2205 -1.7102 0.3953 41 1 5.5595 -2.9773 -0.9024 42 1 4.2161 -3.7726 -1.8769 43 1 1.6646 -4.9811 -1.8039 44 1 1.6394 -3.6914 -3.0304 45 1 1.4308 -6.7985 -3.6260 46 1 1.2304 -5.4065 -4.7208 47 1 -0.6545 -8.3733 -4.6275 48 1 4.1504 -6.7857 -6.8187 49 1 3.0316 -5.3984 -6.8359 50 1 5.1886 -5.9993 -4.7586 51 1 5.1572 -4.6397 -5.9084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035611379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:37 Heat of formation + Delta-G solvation = -31.756814 kcal Electronic energy + Delta-G solvation = -31243.170737 eV Core-core repulsion = 27142.946878 eV Total energy + Delta-G solvation = -4100.223859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.39142 -40.22035 -39.16300 -37.92111 -36.43390 -35.76007 -33.28654 -32.94009 -32.62747 -31.63256 -29.08749 -28.41176 -27.92793 -27.06005 -25.12564 -24.58758 -23.44828 -23.19587 -21.88704 -21.66183 -21.04819 -18.97154 -18.67512 -17.50265 -17.19248 -16.96758 -16.80897 -16.47135 -16.31221 -16.10450 -15.98373 -15.65602 -15.51445 -15.34363 -15.19490 -15.01738 -14.85992 -14.58156 -14.08400 -13.85706 -13.67899 -13.31699 -13.25198 -13.14257 -12.98309 -12.93207 -12.69261 -12.61337 -12.52680 -12.46155 -12.41966 -12.16493 -12.08544 -11.92701 -11.84213 -11.30542 -10.82462 -10.57726 -10.51109 -10.09162 -9.83714 -9.68616 -9.13219 -8.75547 -7.90950 -5.40063 -0.03089 0.41749 1.46375 1.47493 1.56653 2.02530 2.19948 2.47976 2.79892 2.87812 3.23880 3.30828 3.50264 3.76842 3.84631 3.88921 4.07601 4.09050 4.19490 4.27122 4.28427 4.35491 4.44128 4.45413 4.52075 4.54850 4.58843 4.61163 4.62430 4.68448 4.75040 4.83053 4.84845 4.95118 4.99223 5.00211 5.06877 5.07391 5.10648 5.23059 5.40969 5.47875 5.53399 5.53900 5.55854 5.59611 5.98789 6.16268 6.26591 6.27095 6.33317 6.65285 7.05157 7.36411 7.73842 8.27732 9.14585 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.002534 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.815547 B =11046.233087 C =11821.105061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.547 5.547 3 C 0.027 3.973 4 C 0.098 3.902 5 C -0.039 4.039 6 C -0.126 4.126 7 C -0.090 4.090 8 C -0.127 4.127 9 C -0.093 4.093 10 C -0.134 4.134 11 C 0.549 3.451 12 O -0.547 6.547 13 N -0.712 5.712 14 C 0.150 3.850 15 C 0.077 3.923 16 H 0.063 0.937 17 C 0.161 3.839 18 N -0.615 5.615 19 C -0.265 4.265 20 H 0.075 0.925 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.972 3.028 24 H -0.283 1.283 25 H -0.297 1.297 26 H -0.266 1.266 27 C 0.102 3.898 28 C 0.057 3.943 29 O -0.390 6.390 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.144 0.856 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.136 0.864 42 H 0.409 0.591 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.068 0.932 46 H -0.002 1.002 47 H 0.251 0.749 48 H 0.073 0.927 49 H 0.014 0.986 50 H 0.055 0.945 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.523 17.677 14.309 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.271 5.271 3 C -0.121 4.121 4 C -0.029 4.029 5 C -0.040 4.040 6 C -0.145 4.145 7 C -0.108 4.108 8 C -0.144 4.144 9 C -0.112 4.112 10 C -0.137 4.137 11 C 0.337 3.663 12 O -0.426 6.426 13 N -0.365 5.365 14 C 0.025 3.975 15 C 0.018 3.982 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.339 5.339 19 C -0.395 4.395 20 H 0.093 0.907 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.800 3.200 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.190 1.190 27 C -0.024 4.024 28 C -0.021 4.021 29 O -0.309 6.309 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.173 0.827 41 H 0.154 0.846 42 H 0.245 0.755 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.016 0.984 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.032 0.968 50 H 0.073 0.927 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.657 17.690 14.013 25.875 hybrid contribution -0.834 -1.150 0.169 1.431 sum 11.823 16.540 14.182 24.789 Atomic orbital electron populations 1.22208 0.86803 1.01618 1.00251 1.61712 1.08307 1.13717 1.43359 1.22423 1.00739 0.88329 1.00629 1.21048 0.91672 0.99051 0.91087 1.19967 0.95826 0.93923 0.94311 1.21275 0.92997 0.99981 1.00237 1.21700 0.95819 0.96499 0.96746 1.21458 1.00715 0.96154 0.96114 1.21562 0.91330 0.99295 0.98997 1.19758 0.93610 1.00147 1.00231 1.18671 0.88721 0.79085 0.79807 1.90710 1.18622 1.65925 1.67354 1.45732 1.10620 1.42041 1.38070 1.20998 0.90847 0.93649 0.91958 1.22752 0.93280 0.92074 0.90137 0.91889 1.21075 0.91700 0.93420 0.90397 1.44355 1.49770 1.06072 1.33733 1.19573 0.97552 0.84279 1.38097 0.90732 1.25886 0.94571 1.02331 1.01951 1.70179 1.01059 1.35518 1.51462 0.85196 0.76590 0.80079 0.78153 1.20978 1.22329 1.19047 1.21831 0.92318 0.94920 0.93297 1.23089 0.92588 0.95304 0.91108 1.87802 1.60908 1.34160 1.48065 0.94978 0.91480 0.92876 0.91846 0.91452 0.94636 0.90271 0.93547 0.83846 0.82472 0.82695 0.84586 0.75455 0.90891 0.92757 0.91387 0.98418 0.93973 0.90848 0.96778 0.92676 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 9.38 127.69 1.20 2.15 16 2 N -0.55 -14.03 3.97 -953.44 -3.79 -17.82 16 3 C 0.03 0.52 9.38 127.69 1.20 1.72 16 4 C 0.10 2.40 4.11 85.56 0.35 2.75 16 5 C -0.04 -0.87 4.62 -19.61 -0.09 -0.96 16 6 C -0.13 -1.99 9.39 22.23 0.21 -1.78 16 7 C -0.09 -1.10 10.04 22.33 0.22 -0.88 16 8 C -0.13 -1.72 10.03 22.23 0.22 -1.50 16 9 C -0.09 -1.76 9.54 22.53 0.21 -1.54 16 10 C -0.13 -3.35 5.87 -20.09 -0.12 -3.46 16 11 C 0.55 17.26 7.73 86.78 0.67 17.93 16 12 O -0.55 -20.31 12.08 -3.87 -0.05 -20.36 16 13 N -0.71 -21.43 5.40 -465.97 -2.52 -23.95 16 14 C 0.15 5.41 5.37 86.38 0.46 5.88 16 15 C 0.08 2.96 2.86 30.69 0.09 3.05 16 16 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 17 C 0.16 7.92 4.72 86.35 0.41 8.33 16 18 N -0.61 -31.08 3.05 -697.54 -2.13 -33.20 16 19 C -0.27 -14.45 9.66 84.03 0.81 -13.64 16 20 H 0.08 3.89 7.87 -2.91 -0.02 3.86 16 21 C -0.05 -2.89 4.98 84.86 0.42 -2.47 16 22 N -0.94 -55.75 11.07 21.65 0.24 -55.51 16 23 Si 0.97 44.55 29.58 68.60 2.03 46.58 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.10 4.15 6.74 86.36 0.58 4.73 16 28 C 0.06 1.83 6.98 72.08 0.50 2.33 16 29 O -0.39 -14.10 10.14 -148.98 -1.51 -15.61 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 32 H 0.05 1.54 7.71 -2.39 -0.02 1.52 16 33 H 0.06 1.24 7.37 -2.38 -0.02 1.23 16 34 H 0.07 1.25 8.02 -2.39 -0.02 1.23 16 35 H 0.04 0.57 8.02 -2.39 -0.02 0.56 16 36 H 0.08 2.36 6.10 -2.39 -0.01 2.35 16 37 H 0.05 0.93 7.80 -2.38 -0.02 0.91 16 38 H 0.14 1.61 8.00 -2.91 -0.02 1.59 16 39 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 40 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 2.18 6.42 -2.91 -0.02 2.17 16 42 H 0.41 10.35 6.40 -92.71 -0.59 9.75 16 43 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.07 3.73 6.12 -2.39 -0.01 3.72 16 46 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 47 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 48 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 49 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -71.20 403.42 -0.03 -71.24 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.33 Total: 25.99 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 7.36 Total: 22.64 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -8.19 Total: -130.49 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.56 Total: -35.96 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -71.20 -0.03 -71.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035611379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.478 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds