Wall clock time and date at job start Wed Apr 1 2020 05:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36941 * 119.99838 * 2 1 4 4 H 1.07998 * 119.99466 * 183.36654 * 3 2 1 5 5 C 1.38806 * 119.99930 * 3.36046 * 3 2 1 6 6 N 1.31621 * 120.00282 * 5.36664 * 5 3 2 7 7 Si 1.86798 * 119.99929 * 185.36240 * 5 3 2 8 8 H 1.48503 * 109.47398 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47055 * 120.00303 * 7 5 3 10 10 H 1.48500 * 109.47270 * 240.00506 * 7 5 3 11 11 C 1.46497 * 120.00137 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47038 * 84.24713 * 11 2 1 13 13 H 1.08997 * 109.58836 * 298.54927 * 12 11 2 14 14 C 1.53197 * 109.58473 * 58.98204 * 12 11 2 15 15 C 1.53033 * 109.31152 * 174.41925 * 14 12 11 16 16 C 1.53039 * 109.54231 * 298.63302 * 15 14 12 17 17 C 1.52767 * 109.38390 * 61.24028 * 16 15 14 18 18 N 1.46927 * 109.58435 * 178.26616 * 12 11 2 19 19 C 1.34776 * 120.63449 * 6.59013 * 18 12 11 20 20 O 1.21699 * 119.99717 * 359.50184 * 19 18 12 21 21 C 1.46680 * 120.00310 * 179.50569 * 19 18 12 22 22 C 1.38163 * 126.18993 * 155.06730 * 21 19 18 23 23 C 1.38941 * 106.94709 * 180.02562 * 22 21 19 24 24 C 1.36276 * 108.02322 * 0.04231 * 23 22 21 25 25 N 1.34744 * 108.83499 * 359.65261 * 24 23 22 26 26 H 0.97006 * 125.71085 * 180.38320 * 25 24 23 27 27 C 1.51087 * 122.58192 * 179.88973 * 24 23 22 28 28 C 1.53544 * 107.71579 * 344.11755 * 27 24 23 29 29 O 1.42991 * 109.68376 * 48.03801 * 28 27 24 30 30 C 1.43426 * 114.33714 * 288.96521 * 29 28 27 31 31 H 1.09004 * 109.46974 * 180.69870 * 1 2 3 32 32 H 1.08998 * 109.47501 * 300.69643 * 1 2 3 33 33 H 1.09002 * 109.47240 * 60.69550 * 1 2 3 34 34 H 0.97005 * 120.00069 * 179.97438 * 6 5 3 35 35 H 1.09008 * 109.47240 * 324.25229 * 11 2 1 36 36 H 1.09003 * 109.47438 * 204.25062 * 11 2 1 37 37 H 1.08997 * 109.49463 * 294.37302 * 14 12 11 38 38 H 1.09000 * 109.49576 * 54.47092 * 14 12 11 39 39 H 1.09001 * 109.46242 * 58.65439 * 15 14 12 40 40 H 1.09004 * 109.46166 * 178.62738 * 15 14 12 41 41 H 1.09002 * 109.50264 * 181.31410 * 16 15 14 42 42 H 1.08997 * 109.50139 * 301.41729 * 16 15 14 43 43 H 1.08996 * 109.51487 * 185.70864 * 17 16 15 44 44 H 1.09002 * 109.43388 * 65.42355 * 17 16 15 45 45 H 1.07995 * 126.52409 * 359.97436 * 22 21 19 46 46 H 1.09003 * 109.80930 * 103.67417 * 27 24 23 47 47 H 1.08991 * 109.80971 * 224.50050 * 27 24 23 48 48 H 1.08996 * 109.43512 * 168.09789 * 28 27 24 49 49 H 1.08997 * 109.43620 * 288.01433 * 28 27 24 50 50 H 1.09001 * 109.76304 * 291.09605 * 30 29 28 51 51 H 1.09005 * 109.76169 * 170.33490 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2283 1.1867 -0.0549 5 6 1.4574 2.3870 0.0705 6 7 0.1526 2.3854 0.2436 7 14 2.3775 4.0056 -0.0803 8 1 3.8258 3.7362 -0.2681 9 1 1.8597 4.7625 -1.2483 10 1 2.1786 4.8051 1.1553 11 6 2.1975 -1.2687 0.0006 12 6 2.3273 -1.7833 -1.4344 13 1 1.3355 -1.9625 -1.8495 14 6 3.0645 -0.7459 -2.2873 15 6 3.3140 -1.3229 -3.6825 16 6 4.1941 -2.5699 -3.5710 17 6 3.4746 -3.6250 -2.7327 18 7 3.0975 -3.0345 -1.4412 19 6 3.4560 -3.6265 -0.2847 20 8 3.1496 -3.1200 0.7786 21 6 4.2155 -4.8811 -0.3076 22 6 5.0483 -5.3490 0.6906 23 6 5.5595 -6.5652 0.2547 24 6 5.0440 -6.8207 -0.9807 25 7 4.2232 -5.8099 -1.3272 26 1 3.7231 -5.7453 -2.1559 27 6 5.3874 -8.0663 -1.7638 28 6 6.6383 -8.6887 -1.1269 29 8 6.4699 -8.7642 0.2910 30 6 6.5138 -7.4961 0.9598 31 1 -0.3633 -1.0276 0.0125 32 1 -0.3634 0.5246 0.8836 33 1 -0.3634 0.5030 -0.8962 34 1 -0.3311 3.2248 0.2932 35 1 1.6569 -2.0002 0.6013 36 1 3.1907 -1.1147 0.4226 37 1 2.4571 0.1554 -2.3695 38 1 4.0179 -0.5013 -1.8190 39 1 2.3617 -1.5904 -4.1405 40 1 3.8168 -0.5778 -4.2991 41 1 4.3906 -2.9669 -4.5670 42 1 5.1368 -2.3081 -3.0906 43 1 4.1387 -4.4732 -2.5667 44 1 2.5790 -3.9568 -3.2581 45 1 5.2620 -4.8617 1.6303 46 1 4.5585 -8.7726 -1.7167 47 1 5.5914 -7.8053 -2.8022 48 1 6.7891 -9.6909 -1.5281 49 1 7.5071 -8.0717 -1.3560 50 1 7.5246 -7.0908 0.9153 51 1 6.2100 -7.6172 1.9997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158065607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:44 Heat of formation + Delta-G solvation = 31.034692 kcal Electronic energy + Delta-G solvation = -32024.449507 eV Core-core repulsion = 27926.948493 eV Total energy + Delta-G solvation = -4097.501015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.02879 -40.00043 -38.24592 -37.16704 -35.50212 -32.98329 -32.74177 -32.23069 -31.41684 -30.00431 -29.21566 -26.67230 -25.90686 -25.48148 -24.63354 -23.72887 -22.59837 -21.75260 -20.62438 -20.44838 -19.47219 -19.18066 -17.45181 -16.88846 -16.59065 -16.06876 -15.78752 -15.57546 -15.23447 -14.93562 -14.58113 -14.42557 -14.34515 -14.04430 -13.73758 -13.56163 -13.38805 -13.19412 -13.11184 -12.83582 -12.69844 -12.61323 -12.36524 -12.21916 -11.69223 -11.59996 -11.22578 -11.15423 -11.06606 -10.75572 -10.71500 -10.58018 -10.41454 -10.27380 -10.12743 -10.03378 -9.82329 -9.67661 -9.03507 -8.97885 -8.45269 -8.34037 -8.07682 -6.77209 -5.51460 -2.95759 1.43080 2.41098 2.72688 3.05094 3.42973 3.46697 3.49855 3.51485 3.54266 4.28810 4.42486 4.53530 4.59262 4.64308 4.79431 4.82611 4.85416 4.95393 5.02193 5.17749 5.21374 5.24088 5.27708 5.39746 5.43595 5.47110 5.52342 5.59701 5.70987 5.80492 5.83461 5.90435 5.97113 5.98804 6.09007 6.14964 6.40379 6.46702 6.56654 6.69184 6.72480 6.86103 6.88827 6.94770 7.02142 7.13281 7.30563 7.59307 7.70792 7.83506 8.05572 8.36662 8.52387 9.38603 10.03446 10.46412 11.45659 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.002643 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.862174 B =10593.110544 C =11130.672330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.611 5.611 3 C -0.232 4.232 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.919 5.919 7 Si 0.904 3.096 8 H -0.281 1.281 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.166 3.834 12 C 0.123 3.877 13 H 0.063 0.937 14 C -0.118 4.118 15 C -0.121 4.121 16 C -0.131 4.131 17 C 0.086 3.914 18 N -0.602 5.602 19 C 0.581 3.419 20 O -0.507 6.507 21 C -0.041 4.041 22 C -0.095 4.095 23 C -0.218 4.218 24 C 0.039 3.961 25 N -0.528 5.528 26 H 0.420 0.580 27 C -0.086 4.086 28 C 0.069 3.931 29 O -0.381 6.381 30 C 0.136 3.864 31 H -0.012 1.012 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.247 0.753 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.150 0.850 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.101 0.899 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.802 -22.391 -9.307 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.335 5.335 3 C -0.362 4.362 4 H 0.091 0.909 5 C -0.206 4.206 6 N -0.568 5.568 7 Si 0.735 3.265 8 H -0.206 1.206 9 H -0.219 1.219 10 H -0.219 1.219 11 C 0.038 3.962 12 C 0.019 3.981 13 H 0.081 0.919 14 C -0.156 4.156 15 C -0.159 4.159 16 C -0.169 4.169 17 C -0.038 4.038 18 N -0.336 5.336 19 C 0.369 3.631 20 O -0.382 6.382 21 C -0.153 4.153 22 C -0.121 4.121 23 C -0.224 4.224 24 C -0.080 4.080 25 N -0.130 5.130 26 H 0.264 0.736 27 C -0.124 4.124 28 C -0.008 4.008 29 O -0.299 6.299 30 C 0.060 3.940 31 H 0.007 0.993 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.168 0.832 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.352 -22.057 -8.732 26.298 hybrid contribution 0.147 1.332 -1.017 1.683 sum 11.500 -20.724 -9.749 25.628 Atomic orbital electron populations 1.21072 0.82059 0.92821 1.01909 1.44349 1.02392 1.01026 1.85708 1.19369 0.90845 0.83672 1.42285 0.90940 1.24839 0.95778 0.97661 1.02311 1.70214 1.05741 1.24143 1.56751 0.86162 0.78743 0.84378 0.77237 1.20611 1.21920 1.21897 1.21380 0.97479 0.87268 0.90045 1.22590 0.92340 0.80662 1.02509 0.91942 1.21869 1.01365 0.99384 0.93001 1.21581 0.99191 0.96468 0.98663 1.21805 0.99490 0.96455 0.99179 1.22095 0.99385 0.96902 0.85425 1.48334 1.54919 1.25894 1.04502 1.17152 0.79014 0.82627 0.84332 1.90964 1.53454 1.63493 1.30268 1.20754 1.08897 0.94359 0.91331 1.20804 0.97860 0.94900 0.98545 1.19895 1.06945 0.99102 0.96492 1.20258 0.98000 0.92545 0.97152 1.42569 1.36373 1.16775 1.17267 0.73618 1.20992 1.00324 0.92527 0.98540 1.22520 0.95213 1.01494 0.81586 1.88017 1.93735 1.29246 1.18906 1.21056 0.96083 0.81142 0.95744 0.99310 0.92178 0.95729 0.94219 0.92134 0.92324 0.88495 0.92242 0.92244 0.91974 0.91310 0.91502 0.90082 0.91434 0.83239 0.89437 0.89728 0.88133 0.92527 0.92049 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.32 9.01 59.85 0.54 4.86 16 2 N -0.61 -15.89 2.59 -181.12 -0.47 -16.36 16 3 C -0.23 -6.45 8.27 -15.06 -0.12 -6.57 16 4 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 5 C -0.01 -0.30 5.43 -17.43 -0.09 -0.39 16 6 N -0.92 -27.23 9.49 55.49 0.53 -26.71 16 7 Si 0.90 22.38 29.56 -169.99 -5.02 17.36 16 8 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 C 0.17 3.75 3.54 -4.04 -0.01 3.74 16 12 C 0.12 2.27 3.21 -67.60 -0.22 2.05 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.12 -2.08 4.63 -26.61 -0.12 -2.21 16 15 C -0.12 -1.61 5.88 -26.69 -0.16 -1.76 16 16 C -0.13 -1.41 6.06 -26.83 -0.16 -1.57 16 17 C 0.09 0.92 5.53 -3.93 -0.02 0.90 16 18 N -0.60 -9.15 2.98 -167.00 -0.50 -9.65 16 19 C 0.58 9.68 7.54 -12.85 -0.10 9.59 16 20 O -0.51 -10.40 12.39 5.19 0.06 -10.34 16 21 C -0.04 -0.56 6.47 -81.75 -0.53 -1.09 16 22 C -0.10 -1.25 10.72 -39.35 -0.42 -1.68 16 23 C -0.22 -2.42 6.02 -105.01 -0.63 -3.06 16 24 C 0.04 0.38 7.14 -81.83 -0.58 -0.21 16 25 N -0.53 -5.38 4.78 -5.43 -0.03 -5.40 16 26 H 0.42 3.27 6.17 -40.82 -0.25 3.02 16 27 C -0.09 -0.55 6.56 -27.41 -0.18 -0.73 16 28 C 0.07 0.45 6.78 37.44 0.25 0.70 16 29 O -0.38 -3.60 10.75 -35.23 -0.38 -3.98 16 30 C 0.14 1.25 7.25 36.06 0.26 1.51 16 31 H -0.01 -0.28 7.87 -51.93 -0.41 -0.69 16 32 H 0.06 1.72 6.59 -51.93 -0.34 1.38 16 33 H 0.02 0.67 7.47 -51.93 -0.39 0.28 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.06 1.45 6.31 -51.92 -0.33 1.12 16 36 H 0.06 1.42 6.90 -51.93 -0.36 1.07 16 37 H 0.10 2.03 7.00 -51.93 -0.36 1.66 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.73 3.69 -51.93 -0.19 0.54 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -33.40 385.87 -10.39 -43.79 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.09 Total: 1.39 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.30 Total: 4.08 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.47 Total: -58.12 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.31 Total: -14.31 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.40 -10.39 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158065607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.820 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds