Wall clock time and date at job start Wed Apr 1 2020 04:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99953 * 2 1 4 4 H 1.09006 * 110.78414 * 26.76161 * 3 2 1 5 5 C 1.54327 * 110.72118 * 263.52168 * 3 2 1 6 6 N 1.47021 * 107.26817 * 219.44221 * 5 3 2 7 7 C 1.36946 * 125.64494 * 178.90130 * 6 5 3 8 8 H 1.07995 * 119.99880 * 174.88395 * 7 6 5 9 9 C 1.38817 * 119.99769 * 354.87721 * 7 6 5 10 10 N 1.31616 * 119.99991 * 7.06471 * 9 7 6 11 11 Si 1.86799 * 119.99653 * 187.06506 * 9 7 6 12 12 H 1.48492 * 109.47156 * 94.98821 * 11 9 7 13 13 H 1.48500 * 109.46822 * 214.99018 * 11 9 7 14 14 H 1.48502 * 109.47228 * 334.98525 * 11 9 7 15 15 C 1.47467 * 108.72863 * 358.97384 * 6 5 3 16 16 C 1.54916 * 104.80716 * 24.06905 * 15 6 5 17 17 H 1.09003 * 111.00150 * 81.13622 * 16 15 6 18 18 N 1.46495 * 111.00110 * 204.94780 * 16 15 6 19 19 C 1.34771 * 120.00421 * 270.41831 * 18 16 15 20 20 O 1.21287 * 119.99641 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00586 * 180.02562 * 19 18 16 22 22 N 1.46901 * 109.47306 * 180.02562 * 21 19 18 23 23 C 1.46894 * 111.00136 * 293.94912 * 22 21 19 24 24 C 1.46902 * 110.99604 * 169.99642 * 22 21 19 25 25 C 1.50696 * 109.47079 * 189.99938 * 24 22 21 26 26 C 1.38238 * 119.99972 * 269.73332 * 25 24 22 27 27 C 1.38236 * 119.99938 * 179.78708 * 26 25 24 28 28 C 1.38241 * 119.99784 * 0.45988 * 27 26 25 29 29 C 1.38235 * 120.00134 * 359.76748 * 28 27 26 30 30 C 1.38232 * 119.99972 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47036 * 60.00012 * 1 2 3 32 32 H 1.08991 * 109.46871 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47387 * 300.00236 * 1 2 3 34 34 H 1.08998 * 109.87848 * 338.86169 * 5 3 2 35 35 H 1.08994 * 109.88025 * 99.87239 * 5 3 2 36 36 H 0.96998 * 119.99809 * 179.97438 * 10 9 7 37 37 H 1.08997 * 110.34863 * 265.25113 * 15 6 5 38 38 H 1.09003 * 110.40407 * 142.91319 * 15 6 5 39 39 H 0.96999 * 119.99836 * 90.42554 * 18 16 15 40 40 H 1.08994 * 109.46931 * 59.99680 * 21 19 18 41 41 H 1.09007 * 109.46838 * 299.99953 * 21 19 18 42 42 H 1.08996 * 109.47311 * 296.05089 * 23 22 21 43 43 H 1.09005 * 109.46606 * 56.04642 * 23 22 21 44 44 H 1.09003 * 109.47155 * 176.04517 * 23 22 21 45 45 H 1.09000 * 109.47491 * 310.00407 * 24 22 21 46 46 H 1.09003 * 109.47202 * 70.00269 * 24 22 21 47 47 H 1.07994 * 120.00420 * 359.97438 * 26 25 24 48 48 H 1.07996 * 120.00417 * 180.24863 * 27 26 25 49 49 H 1.08002 * 119.99495 * 179.79270 * 28 27 26 50 50 H 1.07994 * 120.00040 * 179.97438 * 29 28 27 51 51 H 1.07995 * 120.00188 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3362 2.0289 0.4589 5 6 2.3811 1.7380 -1.4342 6 7 3.6685 2.4439 -1.3580 7 6 4.3548 2.9692 -2.4203 8 1 5.2541 3.5429 -2.2518 9 6 3.8944 2.7641 -3.7138 10 7 2.7287 2.1867 -3.9136 11 14 4.9295 3.3078 -5.1707 12 1 5.7405 2.1626 -5.6564 13 1 4.0395 3.7818 -6.2607 14 1 5.8314 4.4111 -4.7529 15 6 4.0997 2.4914 0.0514 16 6 3.3816 1.2958 0.7257 17 1 3.9155 0.3640 0.5396 18 7 3.2167 1.5253 2.1631 19 6 4.1767 1.1309 3.0230 20 8 5.1773 0.5865 2.6066 21 6 4.0069 1.3664 4.5017 22 7 5.1813 0.8505 5.2178 23 6 5.2667 -0.6115 5.1044 24 6 5.1652 1.2693 6.6257 25 6 6.4894 0.9371 7.2638 26 6 6.6733 -0.2885 7.8763 27 6 7.8894 -0.5950 8.4578 28 6 8.9185 0.3277 8.4350 29 6 8.7330 1.5551 7.8266 30 6 7.5184 1.8599 7.2415 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.4768 0.8601 -2.0731 35 1 1.6140 2.4031 -1.8308 36 1 2.4069 2.0438 -4.8175 37 1 3.7887 3.4293 0.5115 38 1 5.1810 2.3734 0.1222 39 1 2.4166 1.9609 2.4961 40 1 3.1124 0.8510 4.8513 41 1 3.9074 2.4354 4.6903 42 1 4.4049 -1.0649 5.5940 43 1 5.2769 -0.8943 4.0517 44 1 6.1818 -0.9602 5.5832 45 1 4.9937 2.3442 6.6832 46 1 4.3669 0.7455 7.1516 47 1 5.8679 -1.0077 7.8980 48 1 8.0344 -1.5540 8.9328 49 1 9.8675 0.0895 8.8922 50 1 9.5369 2.2761 7.8092 51 1 7.3733 2.8189 6.7665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213977714.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:50 Heat of formation + Delta-G solvation = -6.005649 kcal Electronic energy + Delta-G solvation = -30401.269817 eV Core-core repulsion = 26302.162613 eV Total energy + Delta-G solvation = -4099.107204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.04659 -39.44758 -38.26489 -36.72477 -35.82971 -33.99086 -32.06547 -31.69957 -31.12707 -29.12179 -28.22528 -27.30845 -26.68867 -26.11727 -24.26490 -23.13425 -22.69834 -21.10666 -20.63871 -20.45213 -19.86352 -17.49828 -17.00935 -16.76656 -16.34240 -16.01945 -15.87195 -15.44109 -15.38351 -14.92973 -14.67024 -14.47053 -14.29950 -14.18757 -14.00682 -13.61316 -13.26369 -13.19963 -12.94841 -12.77762 -12.69573 -12.34706 -12.12716 -11.88541 -11.81052 -11.78929 -11.40942 -11.23309 -11.20009 -11.16869 -11.01291 -10.80069 -10.73633 -10.13425 -9.99053 -9.78865 -9.60792 -9.10850 -9.10474 -9.02426 -8.73449 -8.56149 -8.41763 -6.87354 -5.73756 -3.07173 1.10335 1.20671 2.84544 3.11149 3.42144 3.47704 3.48956 3.56642 4.02524 4.13374 4.49745 4.52176 4.59913 4.78259 4.80623 4.87982 5.00704 5.03919 5.11216 5.16941 5.22481 5.29621 5.37965 5.39779 5.47750 5.48367 5.53448 5.56559 5.64921 5.72239 5.77356 5.83194 5.84886 5.90776 6.06717 6.07895 6.18686 6.23253 6.30402 6.39652 6.56294 6.65692 6.71728 6.79665 6.84645 6.89988 7.25315 7.48345 7.71524 7.74701 7.86815 8.21295 8.48460 9.18412 9.78780 10.42283 11.38173 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.002142 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.257723 B =13067.517176 C =14500.574178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.601 5.601 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.921 5.921 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.135 3.865 17 H 0.104 0.896 18 N -0.719 5.719 19 C 0.513 3.487 20 O -0.518 6.518 21 C 0.036 3.964 22 N -0.517 5.517 23 C 0.016 3.984 24 C 0.093 3.907 25 C -0.075 4.075 26 C -0.113 4.113 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.122 4.122 30 C -0.096 4.096 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.253 0.747 37 H 0.022 0.978 38 H 0.051 0.949 39 H 0.394 0.606 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.019 0.981 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -2.993 25.992 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.329 5.329 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.568 5.568 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.030 3.970 17 H 0.122 0.878 18 N -0.370 5.370 19 C 0.297 3.703 20 O -0.392 6.392 21 C -0.095 4.095 22 N -0.241 5.241 23 C -0.131 4.131 24 C -0.034 4.034 25 C -0.076 4.076 26 C -0.131 4.131 27 C -0.141 4.141 28 C -0.140 4.140 29 C -0.140 4.140 30 C -0.114 4.114 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.037 0.963 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.316 -3.357 25.219 25.475 hybrid contribution -0.911 0.363 -0.304 1.027 sum 0.405 -2.994 24.914 25.097 Atomic orbital electron populations 1.22702 0.81808 1.02017 0.99708 1.87915 1.19016 1.27617 1.95038 1.23844 0.92978 0.84001 0.99522 0.91952 1.21554 0.88163 0.97322 0.89053 1.44273 1.21107 1.66628 1.00845 1.19080 1.05669 1.26881 0.84022 0.90122 1.24841 0.97314 1.00765 0.97359 1.69949 1.18343 1.48424 1.20067 0.86086 0.79302 0.78021 0.82303 1.21494 1.21793 1.20559 1.21838 0.97895 0.93794 0.86109 1.22360 0.96213 1.00945 0.77496 0.87780 1.45936 1.21973 1.61881 1.07259 1.20358 0.83268 0.78725 0.87901 1.90704 1.28315 1.41274 1.78930 1.21988 0.92883 1.02298 0.92305 1.61628 1.39071 1.12657 1.10735 1.22639 1.00221 0.85941 1.04340 1.21095 0.93605 1.01143 0.87582 1.19678 0.95724 0.94396 0.97798 1.21055 0.97594 0.96180 0.98298 1.21103 0.93475 0.99416 1.00127 1.21153 0.98903 0.94122 0.99814 1.21167 0.97374 0.97058 0.98365 1.21050 0.92710 0.99573 0.98117 0.93647 0.90285 0.94898 0.91869 0.93593 0.93669 0.96029 0.93064 0.77230 0.92023 0.87872 0.96300 0.89116 0.91078 0.89754 0.93879 0.86418 0.86233 0.86286 0.86087 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.88 10.43 -35.23 -0.37 -7.25 16 3 C 0.06 1.04 3.08 -24.90 -0.08 0.96 16 4 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 5 C 0.16 4.00 5.16 -3.06 -0.02 3.98 16 6 N -0.60 -15.57 3.40 -170.03 -0.58 -16.15 16 7 C -0.23 -6.46 10.27 -15.05 -0.15 -6.61 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 9 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 10 N -0.92 -27.08 10.36 55.49 0.57 -26.50 16 11 Si 0.91 22.36 29.56 -169.99 -5.02 17.33 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.13 2.82 6.93 -2.50 -0.02 2.81 16 16 C 0.14 2.53 3.09 -65.78 -0.20 2.32 16 17 H 0.10 2.25 7.63 -51.93 -0.40 1.85 16 18 N -0.72 -10.18 5.21 -51.73 -0.27 -10.45 16 19 C 0.51 7.50 7.52 -10.99 -0.08 7.42 16 20 O -0.52 -9.89 14.02 5.55 0.08 -9.81 16 21 C 0.04 0.37 5.45 -4.98 -0.03 0.35 16 22 N -0.52 -5.90 4.49 -245.83 -1.10 -7.01 16 23 C 0.02 0.19 8.79 60.06 0.53 0.72 16 24 C 0.09 0.82 5.12 -4.98 -0.03 0.79 16 25 C -0.08 -0.72 4.87 -104.62 -0.51 -1.23 16 26 C -0.11 -1.00 7.98 -39.58 -0.32 -1.32 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 28 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 29 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 30 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 34 H 0.06 1.75 7.21 -51.93 -0.37 1.38 16 35 H 0.05 1.20 7.61 -51.93 -0.40 0.81 16 36 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.39 4.25 8.54 -40.82 -0.35 3.90 16 40 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 41 H 0.10 0.84 7.93 -51.93 -0.41 0.43 16 42 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.09 1.33 5.82 -51.93 -0.30 1.03 16 44 H 0.07 0.83 6.18 -51.93 -0.32 0.50 16 45 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 46 H 0.04 0.33 8.06 -51.93 -0.42 -0.09 16 47 H 0.12 0.89 8.05 -52.49 -0.42 0.47 16 48 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 51 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 411.15 15.07 6.20 6.20 Total: -1.00 -34.27 411.15 -10.37 -44.64 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.39 Total: 3.13 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -1.48 Total: 5.87 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -1.38 Total: -60.10 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.29 Total: -17.06 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.27 -10.37 -44.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213977714.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.631 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds