Wall clock time and date at job start Wed Apr 1 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99953 * 2 1 4 4 H 1.09006 * 110.78414 * 26.76161 * 3 2 1 5 5 C 1.54327 * 110.72118 * 263.52168 * 3 2 1 6 6 N 1.47021 * 107.26817 * 219.44221 * 5 3 2 7 7 C 1.36946 * 125.64494 * 178.90130 * 6 5 3 8 8 H 1.07995 * 119.99880 * 174.88395 * 7 6 5 9 9 C 1.38817 * 119.99769 * 354.87721 * 7 6 5 10 10 N 1.31616 * 119.99991 * 7.06471 * 9 7 6 11 11 Si 1.86799 * 119.99653 * 187.06506 * 9 7 6 12 12 H 1.48492 * 109.47156 * 94.98821 * 11 9 7 13 13 H 1.48500 * 109.46822 * 214.99018 * 11 9 7 14 14 H 1.48502 * 109.47228 * 334.98525 * 11 9 7 15 15 C 1.47467 * 108.72863 * 358.97384 * 6 5 3 16 16 C 1.54916 * 104.80716 * 24.06905 * 15 6 5 17 17 H 1.09003 * 111.00150 * 81.13622 * 16 15 6 18 18 N 1.46495 * 111.00110 * 204.94780 * 16 15 6 19 19 C 1.34771 * 120.00421 * 270.41831 * 18 16 15 20 20 O 1.21287 * 119.99641 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00586 * 180.02562 * 19 18 16 22 22 N 1.46901 * 109.47306 * 180.02562 * 21 19 18 23 23 C 1.46894 * 111.00136 * 293.94912 * 22 21 19 24 24 C 1.46902 * 110.99604 * 169.99642 * 22 21 19 25 25 C 1.50696 * 109.47079 * 189.99938 * 24 22 21 26 26 C 1.38238 * 119.99972 * 269.73332 * 25 24 22 27 27 C 1.38236 * 119.99938 * 179.78708 * 26 25 24 28 28 C 1.38241 * 119.99784 * 0.45988 * 27 26 25 29 29 C 1.38235 * 120.00134 * 359.76748 * 28 27 26 30 30 C 1.38232 * 119.99972 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47036 * 60.00012 * 1 2 3 32 32 H 1.08991 * 109.46871 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47387 * 300.00236 * 1 2 3 34 34 H 1.08998 * 109.87848 * 338.86169 * 5 3 2 35 35 H 1.08994 * 109.88025 * 99.87239 * 5 3 2 36 36 H 0.96998 * 119.99809 * 179.97438 * 10 9 7 37 37 H 1.08997 * 110.34863 * 265.25113 * 15 6 5 38 38 H 1.09003 * 110.40407 * 142.91319 * 15 6 5 39 39 H 0.96999 * 119.99836 * 90.42554 * 18 16 15 40 40 H 1.08994 * 109.46931 * 59.99680 * 21 19 18 41 41 H 1.09007 * 109.46838 * 299.99953 * 21 19 18 42 42 H 1.08996 * 109.47311 * 296.05089 * 23 22 21 43 43 H 1.09005 * 109.46606 * 56.04642 * 23 22 21 44 44 H 1.09003 * 109.47155 * 176.04517 * 23 22 21 45 45 H 1.09000 * 109.47491 * 310.00407 * 24 22 21 46 46 H 1.09003 * 109.47202 * 70.00269 * 24 22 21 47 47 H 1.07994 * 120.00420 * 359.97438 * 26 25 24 48 48 H 1.07996 * 120.00417 * 180.24863 * 27 26 25 49 49 H 1.08002 * 119.99495 * 179.79270 * 28 27 26 50 50 H 1.07994 * 120.00040 * 179.97438 * 29 28 27 51 51 H 1.07995 * 120.00188 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3362 2.0289 0.4589 5 6 2.3811 1.7380 -1.4342 6 7 3.6685 2.4439 -1.3580 7 6 4.3548 2.9692 -2.4203 8 1 5.2541 3.5429 -2.2518 9 6 3.8944 2.7641 -3.7138 10 7 2.7287 2.1867 -3.9136 11 14 4.9295 3.3078 -5.1707 12 1 5.7405 2.1626 -5.6564 13 1 4.0395 3.7818 -6.2607 14 1 5.8314 4.4111 -4.7529 15 6 4.0997 2.4914 0.0514 16 6 3.3816 1.2958 0.7257 17 1 3.9155 0.3640 0.5396 18 7 3.2167 1.5253 2.1631 19 6 4.1767 1.1309 3.0230 20 8 5.1773 0.5865 2.6066 21 6 4.0069 1.3664 4.5017 22 7 5.1813 0.8505 5.2178 23 6 5.2667 -0.6115 5.1044 24 6 5.1652 1.2693 6.6257 25 6 6.4894 0.9371 7.2638 26 6 6.6733 -0.2885 7.8763 27 6 7.8894 -0.5950 8.4578 28 6 8.9185 0.3277 8.4350 29 6 8.7330 1.5551 7.8266 30 6 7.5184 1.8599 7.2415 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.4768 0.8601 -2.0731 35 1 1.6140 2.4031 -1.8308 36 1 2.4069 2.0438 -4.8175 37 1 3.7887 3.4293 0.5115 38 1 5.1810 2.3734 0.1222 39 1 2.4166 1.9609 2.4961 40 1 3.1124 0.8510 4.8513 41 1 3.9074 2.4354 4.6903 42 1 4.4049 -1.0649 5.5940 43 1 5.2769 -0.8943 4.0517 44 1 6.1818 -0.9602 5.5832 45 1 4.9937 2.3442 6.6832 46 1 4.3669 0.7455 7.1516 47 1 5.8679 -1.0077 7.8980 48 1 8.0344 -1.5540 8.9328 49 1 9.8675 0.0895 8.8922 50 1 9.5369 2.2761 7.8092 51 1 7.3733 2.8189 6.7665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213977714.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:49 Heat of formation + Delta-G solvation = -30.541339 kcal Electronic energy + Delta-G solvation = -30402.333765 eV Core-core repulsion = 26302.162613 eV Total energy + Delta-G solvation = -4100.171152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.17383 -40.30306 -39.63034 -37.69133 -37.35132 -35.53728 -33.71100 -32.65066 -31.75341 -30.73998 -29.54298 -28.37369 -27.86162 -27.48423 -25.99756 -24.06723 -23.34784 -22.35234 -22.05012 -21.66103 -21.24516 -19.14166 -18.30261 -17.81810 -17.46107 -17.26056 -16.89193 -16.68989 -16.20339 -16.14832 -15.85410 -15.72793 -15.67171 -15.23853 -15.17996 -15.02414 -14.54826 -14.25204 -14.17088 -13.88834 -13.64253 -13.61473 -13.41351 -13.25429 -13.01136 -12.81632 -12.78612 -12.65856 -12.58106 -12.45458 -12.29088 -12.06662 -11.88465 -11.88187 -11.78284 -11.61903 -10.85091 -10.76006 -10.53502 -10.04152 -9.75000 -9.67861 -9.20729 -8.96795 -7.89919 -5.26298 0.45859 0.56426 1.44185 1.47622 1.55738 1.71816 2.01066 2.45652 2.76744 2.83364 3.26251 3.30213 3.54424 3.71193 3.85850 3.92363 3.93729 4.00382 4.12349 4.21179 4.28293 4.34677 4.35137 4.40239 4.43252 4.47940 4.51863 4.60835 4.62249 4.65913 4.67849 4.77738 4.84157 4.84815 4.88305 5.00983 5.14898 5.17318 5.21581 5.32346 5.39623 5.52551 5.60246 5.65275 5.67598 5.73768 5.94969 6.07592 6.13113 6.18719 6.32746 6.65854 7.03955 7.37712 7.69169 8.31969 9.20129 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.002142 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.257723 B =13067.517176 C =14500.574178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.100 0.900 5 C 0.173 3.827 6 N -0.623 5.623 7 C -0.247 4.247 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.979 3.021 12 H -0.290 1.290 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.132 3.868 16 C 0.154 3.846 17 H 0.069 0.931 18 N -0.703 5.703 19 C 0.509 3.491 20 O -0.568 6.568 21 C 0.046 3.954 22 N -0.541 5.541 23 C 0.024 3.976 24 C 0.097 3.903 25 C -0.090 4.090 26 C -0.122 4.122 27 C -0.132 4.132 28 C -0.131 4.131 29 C -0.134 4.134 30 C -0.114 4.114 31 H 0.034 0.966 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.017 0.983 35 H 0.021 0.979 36 H 0.249 0.751 37 H 0.043 0.957 38 H 0.031 0.969 39 H 0.417 0.583 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.060 0.940 47 H 0.129 0.871 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.134 0.866 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 -2.336 28.651 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.117 0.883 5 C 0.048 3.952 6 N -0.351 5.351 7 C -0.376 4.376 8 H 0.100 0.900 9 C -0.255 4.255 10 N -0.595 5.595 11 Si 0.807 3.193 12 H -0.217 1.217 13 H -0.216 1.216 14 H -0.191 1.191 15 C 0.005 3.995 16 C 0.047 3.953 17 H 0.087 0.913 18 N -0.357 5.357 19 C 0.296 3.704 20 O -0.446 6.446 21 C -0.084 4.084 22 N -0.265 5.265 23 C -0.124 4.124 24 C -0.029 4.029 25 C -0.090 4.090 26 C -0.140 4.140 27 C -0.150 4.150 28 C -0.149 4.149 29 C -0.152 4.152 30 C -0.132 4.132 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.254 0.746 40 H 0.111 0.889 41 H 0.151 0.849 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.147 0.853 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.152 0.848 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.333 -2.679 27.941 28.072 hybrid contribution -0.587 0.118 -1.087 1.241 sum -0.254 -2.561 26.855 26.978 Atomic orbital electron populations 1.22991 0.79306 1.03849 1.00823 1.87900 1.21786 1.27050 1.94919 1.23484 0.93686 0.85264 0.95724 0.88255 1.21296 0.87034 0.94713 0.92200 1.44546 1.21834 1.66487 1.02196 1.19434 1.05928 1.26963 0.85238 0.90018 1.25689 0.98489 1.01379 0.99955 1.70161 1.19670 1.49529 1.20139 0.85058 0.77764 0.77744 0.78767 1.21689 1.21620 1.19098 1.21937 0.97106 0.95901 0.84516 1.21726 0.95355 0.97961 0.80227 0.91281 1.45672 1.23070 1.61929 1.04984 1.21283 0.82122 0.77191 0.89791 1.90701 1.30464 1.43380 1.80060 1.22013 0.93642 1.04460 0.88308 1.61531 1.40202 1.12222 1.12573 1.22454 1.00922 0.86843 1.02134 1.21127 0.93641 1.02194 0.85929 1.19883 0.96261 0.94703 0.98186 1.21274 0.98215 0.96286 0.98236 1.21414 0.93380 1.00231 0.99975 1.21454 0.99790 0.93972 0.99653 1.21430 0.97668 0.97736 0.98372 1.21248 0.93276 1.00017 0.98708 0.94714 0.88264 0.91471 0.96510 0.96128 0.94172 0.93888 0.95042 0.74600 0.88874 0.84851 0.94327 0.92541 0.91549 0.88270 0.92176 0.85303 0.84475 0.84510 0.84825 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.17 10.43 -148.98 -1.55 -15.72 16 3 C 0.08 2.85 3.08 31.78 0.10 2.95 16 4 H 0.10 2.93 7.69 -2.38 -0.02 2.91 16 5 C 0.17 8.71 5.16 86.73 0.45 9.16 16 6 N -0.62 -33.23 3.40 -691.86 -2.35 -35.58 16 7 C -0.25 -14.34 10.27 84.03 0.86 -13.47 16 8 H 0.08 4.58 7.84 -2.91 -0.02 4.56 16 9 C -0.06 -3.60 5.48 84.86 0.46 -3.13 16 10 N -0.95 -57.69 10.36 21.65 0.22 -57.46 16 11 Si 0.98 46.86 29.56 68.60 2.03 48.88 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 13 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 C 0.13 5.74 6.93 86.85 0.60 6.34 16 16 C 0.15 5.74 3.09 46.39 0.14 5.89 16 17 H 0.07 3.10 7.63 -2.39 -0.02 3.08 16 18 N -0.70 -18.38 5.21 -435.96 -2.27 -20.65 16 19 C 0.51 14.09 7.52 87.66 0.66 14.75 16 20 O -0.57 -22.02 14.02 -3.05 -0.04 -22.06 16 21 C 0.05 0.79 5.45 85.56 0.47 1.26 16 22 N -0.54 -11.17 4.49 -931.66 -4.18 -15.35 16 23 C 0.02 0.55 8.79 127.69 1.12 1.67 16 24 C 0.10 1.44 5.12 85.56 0.44 1.87 16 25 C -0.09 -1.58 4.87 -19.87 -0.10 -1.68 16 26 C -0.12 -1.98 7.98 22.27 0.18 -1.80 16 27 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 28 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 29 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 30 C -0.11 -2.08 9.70 22.27 0.22 -1.86 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 1.27 8.12 -2.38 -0.02 1.25 16 34 H 0.02 0.98 7.21 -2.39 -0.02 0.96 16 35 H 0.02 1.12 7.61 -2.39 -0.02 1.10 16 36 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.42 7.29 8.54 -92.71 -0.79 6.50 16 40 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.13 1.53 7.93 -2.38 -0.02 1.51 16 42 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 1.67 5.82 -2.38 -0.01 1.66 16 44 H 0.07 1.51 6.18 -2.39 -0.01 1.49 16 45 H 0.10 1.15 7.87 -2.39 -0.02 1.13 16 46 H 0.06 0.69 8.06 -2.39 -0.02 0.67 16 47 H 0.13 1.70 8.05 -2.91 -0.02 1.68 16 48 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 49 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 50 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 51 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -79.63 411.15 -0.52 -80.15 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.12 Total: 19.56 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 7.50 Total: 18.24 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -8.58 Total: -129.05 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.60 Total: -37.78 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -79.63 -0.52 -80.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213977714.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.608 kcal (2) G-P(sol) polarization free energy of solvation -79.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds