Wall clock time and date at job start Wed Apr 1 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48500 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47061 * 300.00006 * 3 2 1 6 6 H 1.48502 * 109.47031 * 59.99764 * 3 2 1 7 7 C 1.38809 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00313 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.65111 * 41.13389 * 9 7 2 11 11 C 1.54905 * 104.83790 * 204.09554 * 10 9 7 12 12 C 1.55154 * 101.58108 * 322.99200 * 11 10 9 13 13 C 1.47030 * 125.64803 * 221.10008 * 9 7 2 14 14 H 1.08999 * 109.88139 * 59.40400 * 13 9 7 15 15 C 1.52991 * 109.87896 * 298.38797 * 13 9 7 16 16 H 1.09007 * 109.58606 * 194.00011 * 15 13 9 17 17 C 1.53195 * 109.59336 * 314.42759 * 15 13 9 18 18 C 1.53039 * 109.31827 * 174.42306 * 17 15 13 19 19 C 1.53040 * 109.53443 * 298.63739 * 18 17 15 20 20 C 1.52759 * 109.38592 * 61.23686 * 19 18 17 21 21 N 1.46919 * 109.00943 * 305.58584 * 20 19 18 22 22 C 1.34775 * 120.63166 * 233.58297 * 21 20 19 23 23 O 1.21283 * 120.00096 * 174.39095 * 22 21 20 24 24 C 1.50693 * 119.99784 * 354.66475 * 22 21 20 25 25 C 1.53007 * 109.47100 * 179.72449 * 24 22 21 26 26 N 1.46503 * 109.47137 * 180.02562 * 25 24 22 27 27 C 1.34429 * 126.81792 * 125.00142 * 26 25 24 28 28 N 1.30832 * 108.07304 * 179.97438 * 27 26 25 29 29 C 1.33240 * 109.83280 * 0.02562 * 28 27 26 30 30 N 1.30719 * 108.94447 * 359.74743 * 29 28 27 31 31 H 0.96999 * 120.00474 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.36747 * 322.93742 * 10 9 7 33 33 H 1.09004 * 110.36630 * 85.14575 * 10 9 7 34 34 H 1.09002 * 111.00299 * 81.06625 * 11 10 9 35 35 H 1.09000 * 111.01134 * 204.87512 * 11 10 9 36 36 H 1.09000 * 110.72407 * 277.13693 * 12 11 10 37 37 H 1.09011 * 110.72161 * 153.86212 * 12 11 10 38 38 H 1.09008 * 109.49424 * 294.37599 * 17 15 13 39 39 H 1.09006 * 109.49169 * 54.43556 * 17 15 13 40 40 H 1.08995 * 109.45717 * 58.65497 * 18 17 15 41 41 H 1.08999 * 109.45645 * 178.61320 * 18 17 15 42 42 H 1.09003 * 109.49600 * 181.32116 * 19 18 17 43 43 H 1.09006 * 109.49780 * 301.37544 * 19 18 17 44 44 H 1.08996 * 109.50608 * 185.70001 * 20 19 18 45 45 H 1.09005 * 109.42998 * 65.42822 * 20 19 18 46 46 H 1.09003 * 109.47480 * 299.72427 * 24 22 21 47 47 H 1.09000 * 109.47657 * 59.72717 * 24 22 21 48 48 H 1.09003 * 109.46935 * 300.00311 * 25 24 22 49 49 H 1.09000 * 109.47161 * 60.00219 * 25 24 22 50 50 H 1.08000 * 125.96839 * 359.92192 * 27 26 25 51 51 H 1.08002 * 125.53126 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 0.1149 -2.6805 -0.7903 11 6 -0.5952 -3.8208 -0.0188 12 6 0.6120 -4.6568 0.4821 13 6 1.6765 -3.5808 0.7832 14 1 1.6728 -3.3395 1.8461 15 6 3.0597 -4.0872 0.3695 16 1 3.2126 -5.0931 0.7608 17 6 3.1639 -4.1062 -1.1588 18 6 4.5916 -4.4796 -1.5643 19 6 5.5672 -3.4302 -1.0266 20 6 5.4896 -3.4001 0.4987 21 7 4.0929 -3.1889 0.9027 22 6 3.7649 -2.1868 1.7421 23 8 2.5993 -1.9588 1.9882 24 6 4.8460 -1.3456 2.3701 25 6 4.2087 -0.2828 3.2676 26 7 5.2598 0.5354 3.8776 27 6 5.3726 1.8738 3.8229 28 7 6.4429 2.2186 4.4916 29 6 7.0370 1.1329 4.9851 30 7 6.3468 0.0777 4.6400 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5263 -1.8005 -0.8415 33 1 0.3860 -3.0103 -1.7932 34 1 -1.1715 -3.4264 0.8181 35 1 -1.2284 -4.4076 -0.6843 36 1 0.9599 -5.3364 -0.2958 37 1 0.3519 -5.2058 1.3872 38 1 2.4672 -4.8414 -1.5618 39 1 2.9196 -3.1195 -1.5523 40 1 4.8433 -5.4556 -1.1496 41 1 4.6620 -4.5178 -2.6513 42 1 6.5813 -3.6841 -1.3356 43 1 5.3013 -2.4498 -1.4219 44 1 6.1070 -2.5861 0.8786 45 1 5.8463 -4.3492 0.8988 46 1 5.5000 -1.9810 2.9674 47 1 5.4282 -0.8587 1.5877 48 1 3.5548 0.3525 2.6703 49 1 3.6266 -0.7697 4.0501 50 1 4.6980 2.5469 3.3147 51 1 7.9396 1.1260 5.5781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025205708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:39 Heat of formation + Delta-G solvation = 129.842996 kcal Electronic energy + Delta-G solvation = -33763.829183 eV Core-core repulsion = 29702.905569 eV Total energy + Delta-G solvation = -4060.923614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.97081 -40.30860 -37.24439 -36.55415 -34.59369 -32.52516 -32.37218 -31.31970 -31.13375 -29.93708 -29.11491 -27.20176 -25.28163 -24.41235 -23.99106 -22.50996 -21.90819 -21.42212 -20.36382 -20.09894 -19.39122 -18.23142 -17.44588 -16.76804 -16.12586 -15.84654 -15.30839 -15.21052 -14.86224 -14.51862 -14.21157 -14.16948 -14.01644 -13.86405 -13.73470 -13.28622 -13.10066 -12.82851 -12.45742 -12.23191 -12.06612 -11.92374 -11.83920 -11.68615 -11.27004 -11.11080 -10.96781 -10.92855 -10.80930 -10.64767 -10.45592 -10.26682 -10.09018 -10.01181 -9.98695 -9.85077 -9.74115 -9.67111 -9.62414 -9.50257 -8.37636 -8.09922 -7.69661 -6.19840 -5.55614 -3.15705 1.69570 2.37534 3.00662 3.22502 3.31798 3.37819 3.41651 3.63411 4.37700 4.48385 4.57767 4.89594 4.97574 5.04114 5.09512 5.15704 5.29371 5.32597 5.44922 5.50615 5.57505 5.64783 5.68722 5.73254 5.79930 5.85335 5.86757 5.95781 5.98054 6.07977 6.10779 6.17502 6.26069 6.30144 6.38272 6.40418 6.47971 6.51466 6.53671 6.70526 6.82511 6.85480 6.86182 7.07679 7.22779 7.41725 7.59274 7.77616 7.95529 8.12102 8.15143 8.62620 9.07587 9.28631 9.88703 10.75564 11.39707 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.004875 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.828788 B = 5742.038188 C = 7036.837154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.006 3.994 3 Si 0.876 3.124 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.170 4.170 8 H 0.056 0.944 9 N -0.565 5.565 10 C 0.126 3.874 11 C -0.128 4.128 12 C -0.134 4.134 13 C 0.141 3.859 14 H 0.089 0.911 15 C 0.145 3.855 16 H 0.050 0.950 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.134 4.134 20 C 0.114 3.886 21 N -0.606 5.606 22 C 0.481 3.519 23 O -0.440 6.440 24 C -0.144 4.144 25 C 0.144 3.856 26 N -0.370 5.370 27 C 0.256 3.744 28 N -0.554 5.554 29 C 0.190 3.810 30 N -0.321 5.321 31 H 0.249 0.751 32 H 0.096 0.904 33 H -0.004 1.004 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.113 0.887 49 H 0.099 0.901 50 H 0.216 0.784 51 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.093 -6.358 2.270 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.192 4.192 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.300 4.300 8 H 0.073 0.927 9 N -0.288 5.288 10 C 0.001 3.999 11 C -0.167 4.167 12 C -0.173 4.173 13 C 0.034 3.966 14 H 0.106 0.894 15 C 0.040 3.960 16 H 0.068 0.932 17 C -0.163 4.163 18 C -0.154 4.154 19 C -0.172 4.172 20 C -0.010 4.010 21 N -0.343 5.343 22 C 0.267 3.733 23 O -0.312 6.312 24 C -0.185 4.185 25 C 0.022 3.978 26 N -0.161 5.161 27 C -0.041 4.041 28 N -0.281 5.281 29 C -0.113 4.113 30 N -0.150 5.150 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.013 0.987 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.131 0.869 49 H 0.117 0.883 50 H 0.232 0.768 51 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.597 -6.432 2.644 11.852 hybrid contribution 0.478 0.979 -0.411 1.165 sum 10.074 -5.453 2.233 11.671 Atomic orbital electron populations 1.69686 1.05223 1.24518 1.54551 1.25391 0.95203 0.97412 1.01204 0.86614 0.79345 0.85737 0.77682 1.20477 1.21875 1.21473 1.18569 0.89354 0.81755 1.40317 0.92681 1.44071 1.29805 1.08918 1.46002 1.21821 0.90469 0.96945 0.90698 1.22691 0.96412 0.97697 0.99851 1.22704 0.97664 0.97597 0.99344 1.21884 0.88382 0.87147 0.99167 0.89434 1.21884 0.90208 0.90853 0.93030 0.93215 1.21910 0.94428 1.03792 0.96162 1.21510 0.96281 0.97763 0.99872 1.21812 0.99015 1.00619 0.95756 1.21440 0.83619 1.00945 0.94972 1.47667 1.06797 1.32084 1.47725 1.19631 0.89479 0.81765 0.82393 1.90898 1.17532 1.64611 1.58116 1.21831 0.99234 0.97841 0.99609 1.21704 0.85528 0.93560 0.96991 1.50711 1.20637 1.06620 1.38085 1.26096 0.96236 0.84678 0.97081 1.70534 1.08900 1.31357 1.17356 1.25946 1.00417 0.85287 0.99679 1.77975 0.99280 1.23798 1.13921 0.93975 0.88686 0.98652 0.92124 0.93411 0.92830 0.92948 0.92342 0.89010 0.92930 0.92633 0.91867 0.91367 0.90802 0.92513 0.88833 0.89729 0.86898 0.88260 0.76762 0.76979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 11.03 55.49 0.61 -24.62 16 2 C 0.01 0.16 5.44 -17.43 -0.09 0.07 16 3 Si 0.88 20.32 29.22 -169.99 -4.97 15.35 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.17 -4.24 5.67 -15.06 -0.09 -4.33 16 8 H 0.06 1.36 5.29 -52.49 -0.28 1.09 16 9 N -0.56 -13.14 1.76 -162.58 -0.29 -13.43 16 10 C 0.13 2.90 6.85 -2.53 -0.02 2.89 16 11 C -0.13 -2.50 7.08 -24.59 -0.17 -2.68 16 12 C -0.13 -2.39 6.33 -24.90 -0.16 -2.55 16 13 C 0.14 2.83 2.31 -66.95 -0.15 2.67 16 14 H 0.09 2.00 5.39 -54.87 -0.30 1.70 16 15 C 0.15 2.47 2.54 -67.60 -0.17 2.29 16 16 H 0.05 0.79 8.11 -51.92 -0.42 0.36 16 17 C -0.12 -2.04 4.95 -26.61 -0.13 -2.17 16 18 C -0.12 -1.53 5.89 -26.69 -0.16 -1.69 16 19 C -0.13 -1.69 6.06 -26.83 -0.16 -1.85 16 20 C 0.11 1.47 6.30 -3.94 -0.02 1.44 16 21 N -0.61 -9.85 2.58 -165.49 -0.43 -10.27 16 22 C 0.48 8.55 5.21 -10.99 -0.06 8.50 16 23 O -0.44 -9.49 8.61 5.55 0.05 -9.44 16 24 C -0.14 -2.14 4.33 -27.88 -0.12 -2.26 16 25 C 0.14 2.18 5.84 -4.04 -0.02 2.16 16 26 N -0.37 -5.46 3.69 -62.62 -0.23 -5.69 16 27 C 0.26 3.57 12.63 -90.65 -1.14 2.43 16 28 N -0.55 -8.03 11.19 -15.83 -0.18 -8.20 16 29 C 0.19 2.48 13.03 -91.81 -1.20 1.28 16 30 N -0.32 -4.71 12.57 29.29 0.37 -4.35 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.10 2.53 5.65 -51.93 -0.29 2.24 16 33 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.87 6.64 -51.93 -0.34 0.53 16 37 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 38 H 0.06 0.93 6.98 -51.92 -0.36 0.57 16 39 H 0.09 1.85 6.53 -51.93 -0.34 1.52 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.88 5.96 -51.93 -0.31 0.57 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.28 8.12 -51.93 -0.42 0.86 16 47 H 0.08 1.26 7.45 -51.93 -0.39 0.87 16 48 H 0.11 1.88 7.71 -51.93 -0.40 1.48 16 49 H 0.10 1.52 8.10 -51.93 -0.42 1.10 16 50 H 0.22 2.41 8.06 -52.49 -0.42 1.99 16 51 H 0.21 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -30.45 382.08 -11.24 -41.68 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.06 Total: 6.99 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -3.87 Total: 6.21 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.14 Total: -66.56 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.05 Total: -9.44 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.97 Total: 15.35 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.45 -11.24 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025205708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.527 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds