Wall clock time and date at job start Wed Apr 1 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48500 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47061 * 300.00006 * 3 2 1 6 6 H 1.48502 * 109.47031 * 59.99764 * 3 2 1 7 7 C 1.38809 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00313 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.65111 * 41.13389 * 9 7 2 11 11 C 1.54905 * 104.83790 * 204.09554 * 10 9 7 12 12 C 1.55154 * 101.58108 * 322.99200 * 11 10 9 13 13 C 1.47030 * 125.64803 * 221.10008 * 9 7 2 14 14 H 1.08999 * 109.88139 * 59.40400 * 13 9 7 15 15 C 1.52991 * 109.87896 * 298.38797 * 13 9 7 16 16 H 1.09007 * 109.58606 * 194.00011 * 15 13 9 17 17 C 1.53195 * 109.59336 * 314.42759 * 15 13 9 18 18 C 1.53039 * 109.31827 * 174.42306 * 17 15 13 19 19 C 1.53040 * 109.53443 * 298.63739 * 18 17 15 20 20 C 1.52759 * 109.38592 * 61.23686 * 19 18 17 21 21 N 1.46919 * 109.00943 * 305.58584 * 20 19 18 22 22 C 1.34775 * 120.63166 * 233.58297 * 21 20 19 23 23 O 1.21283 * 120.00096 * 174.39095 * 22 21 20 24 24 C 1.50693 * 119.99784 * 354.66475 * 22 21 20 25 25 C 1.53007 * 109.47100 * 179.72449 * 24 22 21 26 26 N 1.46503 * 109.47137 * 180.02562 * 25 24 22 27 27 C 1.34429 * 126.81792 * 125.00142 * 26 25 24 28 28 N 1.30832 * 108.07304 * 179.97438 * 27 26 25 29 29 C 1.33240 * 109.83280 * 0.02562 * 28 27 26 30 30 N 1.30719 * 108.94447 * 359.74743 * 29 28 27 31 31 H 0.96999 * 120.00474 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.36747 * 322.93742 * 10 9 7 33 33 H 1.09004 * 110.36630 * 85.14575 * 10 9 7 34 34 H 1.09002 * 111.00299 * 81.06625 * 11 10 9 35 35 H 1.09000 * 111.01134 * 204.87512 * 11 10 9 36 36 H 1.09000 * 110.72407 * 277.13693 * 12 11 10 37 37 H 1.09011 * 110.72161 * 153.86212 * 12 11 10 38 38 H 1.09008 * 109.49424 * 294.37599 * 17 15 13 39 39 H 1.09006 * 109.49169 * 54.43556 * 17 15 13 40 40 H 1.08995 * 109.45717 * 58.65497 * 18 17 15 41 41 H 1.08999 * 109.45645 * 178.61320 * 18 17 15 42 42 H 1.09003 * 109.49600 * 181.32116 * 19 18 17 43 43 H 1.09006 * 109.49780 * 301.37544 * 19 18 17 44 44 H 1.08996 * 109.50608 * 185.70001 * 20 19 18 45 45 H 1.09005 * 109.42998 * 65.42822 * 20 19 18 46 46 H 1.09003 * 109.47480 * 299.72427 * 24 22 21 47 47 H 1.09000 * 109.47657 * 59.72717 * 24 22 21 48 48 H 1.09003 * 109.46935 * 300.00311 * 25 24 22 49 49 H 1.09000 * 109.47161 * 60.00219 * 25 24 22 50 50 H 1.08000 * 125.96839 * 359.92192 * 27 26 25 51 51 H 1.08002 * 125.53126 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 0.1149 -2.6805 -0.7903 11 6 -0.5952 -3.8208 -0.0188 12 6 0.6120 -4.6568 0.4821 13 6 1.6765 -3.5808 0.7832 14 1 1.6728 -3.3395 1.8461 15 6 3.0597 -4.0872 0.3695 16 1 3.2126 -5.0931 0.7608 17 6 3.1639 -4.1062 -1.1588 18 6 4.5916 -4.4796 -1.5643 19 6 5.5672 -3.4302 -1.0266 20 6 5.4896 -3.4001 0.4987 21 7 4.0929 -3.1889 0.9027 22 6 3.7649 -2.1868 1.7421 23 8 2.5993 -1.9588 1.9882 24 6 4.8460 -1.3456 2.3701 25 6 4.2087 -0.2828 3.2676 26 7 5.2598 0.5354 3.8776 27 6 5.3726 1.8738 3.8229 28 7 6.4429 2.2186 4.4916 29 6 7.0370 1.1329 4.9851 30 7 6.3468 0.0777 4.6400 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5263 -1.8005 -0.8415 33 1 0.3860 -3.0103 -1.7932 34 1 -1.1715 -3.4264 0.8181 35 1 -1.2284 -4.4076 -0.6843 36 1 0.9599 -5.3364 -0.2958 37 1 0.3519 -5.2058 1.3872 38 1 2.4672 -4.8414 -1.5618 39 1 2.9196 -3.1195 -1.5523 40 1 4.8433 -5.4556 -1.1496 41 1 4.6620 -4.5178 -2.6513 42 1 6.5813 -3.6841 -1.3356 43 1 5.3013 -2.4498 -1.4219 44 1 6.1070 -2.5861 0.8786 45 1 5.8463 -4.3492 0.8988 46 1 5.5000 -1.9810 2.9674 47 1 5.4282 -0.8587 1.5877 48 1 3.5548 0.3525 2.6703 49 1 3.6266 -0.7697 4.0501 50 1 4.6980 2.5469 3.3147 51 1 7.9396 1.1260 5.5781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025205708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:38 Heat of formation + Delta-G solvation = 114.832207 kcal Electronic energy + Delta-G solvation = -33764.480100 eV Core-core repulsion = 29702.905569 eV Total energy + Delta-G solvation = -4061.574531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.04595 -41.71419 -38.73824 -37.93184 -35.80854 -34.37380 -33.63553 -32.64358 -32.21354 -31.14162 -30.91720 -28.65781 -26.66297 -26.12225 -25.20193 -23.81753 -22.97066 -22.57859 -21.80607 -21.56560 -20.91562 -19.54157 -18.90583 -18.25205 -17.60224 -17.08038 -16.69297 -16.53919 -16.14734 -15.97225 -15.68305 -15.51613 -15.24777 -15.06459 -14.91518 -14.59888 -14.47506 -14.10514 -13.86974 -13.74022 -13.46115 -13.37802 -13.22558 -13.07534 -12.86865 -12.73330 -12.62126 -12.31893 -12.18557 -12.02097 -11.84603 -11.76411 -11.61574 -11.51931 -11.36778 -11.26460 -11.10276 -11.07818 -10.83933 -10.73539 -10.29952 -9.55788 -9.10751 -8.09080 -7.48154 -5.13006 0.61908 1.24386 1.36362 1.42146 1.49453 1.97005 2.00929 2.36711 2.58573 3.43019 3.44654 3.53046 3.71538 3.80173 3.92366 3.97885 4.04926 4.10629 4.17473 4.20541 4.28052 4.32647 4.37348 4.43768 4.46862 4.55333 4.63473 4.68851 4.74119 4.76102 4.84640 4.96167 4.99595 5.08234 5.13595 5.19599 5.22425 5.24900 5.30165 5.32818 5.38706 5.48264 5.63304 5.69195 5.76077 5.76898 5.84570 6.02541 6.11819 6.68029 6.82028 7.06384 7.35809 7.69867 8.01292 8.84338 9.44036 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.004875 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.828788 B = 5742.038188 C = 7036.837154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.059 4.059 3 Si 0.924 3.076 4 H -0.259 1.259 5 H -0.308 1.308 6 H -0.287 1.287 7 C -0.142 4.142 8 H 0.058 0.942 9 N -0.576 5.576 10 C 0.123 3.877 11 C -0.119 4.119 12 C -0.124 4.124 13 C 0.137 3.863 14 H 0.061 0.939 15 C 0.147 3.853 16 H 0.076 0.924 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.131 4.131 20 C 0.109 3.891 21 N -0.608 5.608 22 C 0.482 3.518 23 O -0.489 6.489 24 C -0.130 4.130 25 C 0.153 3.847 26 N -0.379 5.379 27 C 0.251 3.749 28 N -0.570 5.570 29 C 0.194 3.806 30 N -0.341 5.341 31 H 0.237 0.763 32 H 0.056 0.944 33 H -0.006 1.006 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.234 0.766 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 -8.649 2.573 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.252 4.252 3 Si 0.755 3.245 4 H -0.183 1.183 5 H -0.237 1.237 6 H -0.214 1.214 7 C -0.273 4.273 8 H 0.075 0.925 9 N -0.299 5.299 10 C -0.003 4.003 11 C -0.158 4.158 12 C -0.162 4.162 13 C 0.031 3.969 14 H 0.078 0.922 15 C 0.043 3.957 16 H 0.094 0.906 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.169 4.169 20 C -0.014 4.014 21 N -0.343 5.343 22 C 0.270 3.730 23 O -0.364 6.364 24 C -0.171 4.171 25 C 0.031 3.969 26 N -0.168 5.168 27 C -0.045 4.045 28 N -0.298 5.298 29 C -0.108 4.108 30 N -0.169 5.169 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.012 0.988 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.130 0.870 47 H 0.108 0.892 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.251 0.749 51 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 13.038 -8.762 2.945 15.983 hybrid contribution -0.461 1.582 -0.465 1.712 sum 12.578 -7.181 2.480 14.694 Atomic orbital electron populations 1.69899 1.06545 1.23950 1.58308 1.25963 0.95818 1.00224 1.03219 0.85801 0.79442 0.82584 0.76698 1.18319 1.23668 1.21436 1.18697 0.89375 0.82339 1.36854 0.92476 1.44245 1.29573 1.09579 1.46508 1.21703 0.90401 0.96786 0.91381 1.22564 0.97103 0.96963 0.99130 1.22678 0.95705 0.97022 1.00826 1.21886 0.91172 0.86541 0.97315 0.92168 1.21755 0.88559 0.91794 0.93633 0.90637 1.21770 0.97048 1.01422 0.95318 1.21476 0.93858 0.98923 1.00565 1.21803 1.00653 0.99076 0.95345 1.21734 0.81459 1.02868 0.95299 1.47861 1.08393 1.31264 1.46812 1.20187 0.89566 0.81670 0.81621 1.90915 1.19400 1.65980 1.60101 1.21710 0.98253 0.97490 0.99612 1.21448 0.85573 0.93296 0.96618 1.50656 1.20786 1.06800 1.38602 1.26585 0.96426 0.84723 0.96792 1.70592 1.09312 1.31973 1.17909 1.26713 1.00866 0.84384 0.98829 1.77953 0.99589 1.24681 1.14673 0.95325 0.92625 0.98828 0.94248 0.90673 0.90498 0.91097 0.91962 0.93466 0.90502 0.91905 0.88613 0.94130 0.89730 0.89672 0.87006 0.89210 0.88716 0.88970 0.74945 0.73406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.35 11.03 21.65 0.24 -56.11 16 2 C -0.06 -3.28 5.44 84.86 0.46 -2.82 16 3 Si 0.92 43.48 29.22 68.60 2.00 45.48 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.14 -7.29 5.67 84.03 0.48 -6.82 16 8 H 0.06 2.87 5.29 -2.91 -0.02 2.85 16 9 N -0.58 -27.54 1.76 -668.27 -1.17 -28.72 16 10 C 0.12 5.89 6.85 86.85 0.60 6.48 16 11 C -0.12 -4.66 7.08 31.98 0.23 -4.44 16 12 C -0.12 -4.19 6.33 31.78 0.20 -3.99 16 13 C 0.14 5.43 2.31 45.34 0.10 5.54 16 14 H 0.06 2.79 5.39 -48.92 -0.26 2.53 16 15 C 0.15 4.68 2.54 44.97 0.11 4.79 16 16 H 0.08 2.07 8.11 -2.38 -0.02 2.05 16 17 C -0.12 -3.59 4.95 30.67 0.15 -3.44 16 18 C -0.11 -2.49 5.89 30.62 0.18 -2.31 16 19 C -0.13 -2.83 6.06 30.53 0.19 -2.64 16 20 C 0.11 2.37 6.30 86.22 0.54 2.91 16 21 N -0.61 -18.42 2.58 -795.87 -2.05 -20.48 16 22 C 0.48 16.76 5.21 87.65 0.46 17.21 16 23 O -0.49 -21.49 8.61 -3.04 -0.03 -21.52 16 24 C -0.13 -3.66 4.33 29.85 0.13 -3.53 16 25 C 0.15 4.59 5.84 86.38 0.50 5.10 16 26 N -0.38 -10.70 3.69 -352.04 -1.30 -12.00 16 27 C 0.25 6.70 12.63 180.36 2.28 8.98 16 28 N -0.57 -15.47 11.19 -204.00 -2.28 -17.76 16 29 C 0.19 4.62 13.03 180.76 2.36 6.97 16 30 N -0.34 -9.33 12.57 -61.24 -0.77 -10.10 16 31 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.06 3.17 5.65 -2.38 -0.01 3.15 16 33 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 2.25 6.64 -2.39 -0.02 2.24 16 37 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.06 1.83 6.98 -2.38 -0.02 1.82 16 39 H 0.05 1.89 6.53 -2.38 -0.02 1.87 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.08 1.69 5.96 -2.39 -0.01 1.67 16 45 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.11 2.76 8.12 -2.39 -0.02 2.74 16 47 H 0.09 2.47 7.45 -2.39 -0.02 2.46 16 48 H 0.09 3.21 7.71 -2.39 -0.02 3.19 16 49 H 0.09 2.87 8.10 -2.39 -0.02 2.85 16 50 H 0.23 4.99 8.06 -2.91 -0.02 4.96 16 51 H 0.25 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -70.82 382.08 4.28 -66.54 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.68 Total: 26.65 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 8.96 Total: 28.00 kcal Atomic # 7 Polarization: -137.81 SS G_CDS: -7.34 Total: -145.15 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.03 Total: -21.52 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.00 Total: 45.48 kcal Total: -70.82 4.28 -66.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025205708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.372 kcal (2) G-P(sol) polarization free energy of solvation -70.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds